Wall clock time and date at job start Tue Mar 31 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75340 * 124.37239 * 2 1 4 4 C 1.75876 * 92.15730 * 179.97438 * 3 2 1 5 5 N 1.35020 * 130.81815 * 179.97438 * 4 3 2 6 6 C 1.29983 * 121.70342 * 179.70715 * 5 4 3 7 7 N 1.35787 * 121.86478 * 0.59206 * 6 5 4 8 8 C 1.46509 * 119.81283 * 179.71424 * 7 6 5 9 9 C 1.50698 * 109.47002 * 269.72065 * 8 7 6 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.53008 * 109.47014 * 275.27733 * 12 11 9 15 15 C 1.50696 * 109.47278 * 155.27952 * 12 11 9 16 16 H 1.08002 * 120.00157 * 359.97438 * 15 12 11 17 17 C 1.37881 * 120.00447 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99635 * 359.97438 * 17 15 12 19 19 Si 1.86792 * 120.00210 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.47150 * 60.00100 * 19 17 15 21 21 H 1.48498 * 109.47193 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47405 * 300.00440 * 19 17 15 23 23 C 1.34744 * 120.37185 * 359.43535 * 7 6 5 24 24 O 1.21898 * 120.64864 * 180.27859 * 23 7 6 25 25 C 1.39182 * 109.62240 * 359.97438 * 4 3 2 26 26 C 1.32033 * 124.37220 * 179.97438 * 2 1 3 27 27 C 1.50694 * 122.60051 * 0.04063 * 26 2 1 28 28 H 1.09001 * 109.47207 * 0.02639 * 1 2 3 29 29 H 1.09000 * 109.47334 * 120.02187 * 1 2 3 30 30 H 1.09004 * 109.47328 * 240.02142 * 1 2 3 31 31 H 1.08004 * 119.06834 * 180.27639 * 6 5 4 32 32 H 1.09003 * 109.46564 * 149.72493 * 8 7 6 33 33 H 1.08993 * 109.46901 * 29.72828 * 8 7 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.46722 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.47169 * 299.99790 * 14 12 11 37 37 H 1.08995 * 109.47066 * 60.00517 * 14 12 11 38 38 H 0.97000 * 120.00295 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.47380 * 269.98008 * 27 26 2 40 40 H 1.09004 * 109.47121 * 29.97673 * 27 26 2 41 41 H 1.08997 * 109.47248 * 149.97358 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4969 1.4472 0.0000 4 6 3.9849 0.5096 0.0008 5 7 5.2763 0.9036 0.0007 6 6 6.2524 0.0453 0.0070 7 7 6.0292 -1.2941 0.0021 8 6 7.1633 -2.2216 0.0033 9 6 7.5527 -2.5406 -1.4171 10 8 6.9434 -2.0420 -2.3396 11 7 8.5789 -3.3792 -1.6623 12 6 8.9537 -3.6940 -3.0431 13 1 8.8082 -2.8136 -3.6689 14 6 8.0792 -4.8379 -3.5607 15 6 10.4018 -4.1087 -3.0884 16 1 10.9848 -4.1347 -2.1797 17 6 10.9825 -4.4549 -4.2901 18 7 10.2725 -4.4238 -5.3966 19 14 12.7777 -4.9682 -4.3464 20 1 12.9767 -6.1673 -3.4931 21 1 13.1576 -5.2875 -5.7460 22 1 13.6261 -3.8575 -3.8447 23 6 4.7704 -1.7750 0.0019 24 8 4.5642 -2.9764 0.0026 25 6 3.6815 -0.8487 0.0016 26 6 2.2524 -1.0898 0.0005 27 6 1.6629 -2.4766 0.0002 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3634 -0.5135 0.8902 31 1 7.2698 0.4076 0.0112 32 1 6.8808 -3.1402 0.5176 33 1 8.0076 -1.7624 0.5173 34 1 9.0666 -3.7778 -0.9245 35 1 8.3585 -5.0724 -4.5880 36 1 8.2249 -5.7184 -2.9350 37 1 7.0319 -4.5380 -3.5280 38 1 10.6811 -4.6670 -6.2421 39 1 1.5205 -2.8112 1.0278 40 1 0.7018 -2.4628 -0.5138 41 1 2.3399 -3.1591 -0.5136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330395277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:03 Heat of formation + Delta-G solvation = -19.939004 kcal Electronic energy + Delta-G solvation = -26175.192628 eV Core-core repulsion = 22374.794051 eV Total energy + Delta-G solvation = -3800.398578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81837 -39.04927 -37.63902 -37.55763 -35.06945 -34.42644 -32.51759 -31.39847 -29.81468 -29.43150 -27.90661 -26.42821 -25.31491 -24.45124 -23.33339 -21.44316 -19.78759 -19.58309 -18.69360 -17.91146 -17.62460 -17.12049 -16.41003 -16.01844 -15.45352 -15.13421 -14.72020 -14.65813 -14.44206 -14.24779 -13.98403 -13.61078 -13.22218 -13.15989 -12.93683 -12.82824 -12.55003 -12.49898 -12.32606 -12.07530 -11.76040 -11.66133 -11.16831 -11.04507 -11.00536 -10.80901 -10.40324 -10.28844 -10.23098 -10.16922 -10.02771 -9.19641 -9.12031 -8.62482 -8.60971 -8.07723 -8.02225 -6.17948 -4.28431 0.15661 0.99446 1.58725 1.69331 1.97884 2.26524 3.08730 3.21620 3.27225 3.28006 3.42206 3.91734 3.98058 4.23620 4.30899 4.56977 4.71628 4.74295 4.91344 5.03125 5.14086 5.16578 5.22744 5.26889 5.30824 5.47200 5.57811 5.64633 5.81567 5.98923 6.06655 6.32248 6.48981 6.76553 6.91049 7.08136 7.31482 7.44290 7.50472 7.60513 7.75911 7.82872 8.07775 8.48121 8.66741 8.92426 9.38928 10.87910 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.002546 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.588926 B =10994.493712 C =11370.052306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.211 4.211 3 S 0.181 5.819 4 C 0.083 3.917 5 N -0.510 5.510 6 C 0.401 3.599 7 N -0.512 5.512 8 C 0.069 3.931 9 C 0.488 3.512 10 O -0.542 6.542 11 N -0.700 5.700 12 C 0.267 3.733 13 H 0.049 0.951 14 C -0.148 4.148 15 C -0.537 4.537 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.564 3.436 24 O -0.516 6.516 25 C -0.226 4.226 26 C -0.034 4.034 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.211 0.789 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.391 0.609 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.866 9.385 15.105 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.327 4.327 3 S 0.446 5.554 4 C -0.149 4.149 5 N -0.232 5.232 6 C 0.112 3.888 7 N -0.231 5.231 8 C -0.057 4.057 9 C 0.270 3.730 10 O -0.420 6.420 11 N -0.349 5.349 12 C 0.165 3.835 13 H 0.067 0.933 14 C -0.207 4.207 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.358 3.642 24 O -0.392 6.392 25 C -0.244 4.244 26 C -0.045 4.045 27 C -0.158 4.158 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.227 0.773 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.224 0.776 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.834 11.319 14.187 23.441 hybrid contribution 1.657 -2.683 0.127 3.156 sum -13.177 8.637 14.314 21.287 Atomic orbital electron populations 1.20279 0.87060 1.02778 1.03125 1.23726 1.00256 0.95160 1.13598 1.83894 0.90856 1.06197 1.74405 1.23842 0.96745 0.94402 0.99956 1.67903 0.97059 1.33953 1.24333 1.24938 0.99933 0.78209 0.85747 1.46161 1.08642 1.08010 1.60333 1.21979 0.88649 0.96529 0.98557 1.20403 0.81782 0.80880 0.89922 1.90730 1.52984 1.52935 1.45399 1.46485 1.31514 1.44889 1.11979 1.18786 0.93526 0.95086 0.76072 0.93321 1.22086 0.96277 0.98289 1.04015 1.21146 0.94606 1.47490 0.94276 0.91995 1.24898 0.98473 0.94980 0.95346 1.69891 1.36256 1.47129 0.98668 0.86479 0.84182 0.79034 0.77223 1.20111 1.21108 1.20137 1.16562 0.81503 0.88671 0.77423 1.90889 1.83439 1.14954 1.49886 1.20567 0.94671 0.92444 1.16693 1.19109 0.89332 0.96803 0.99238 1.20615 1.00712 0.91813 1.02643 0.91384 0.90384 0.90481 0.77263 0.85493 0.85790 0.77623 0.89048 0.95333 0.96664 0.92412 0.90940 0.91444 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 9.35 36.00 0.34 -0.21 16 2 C -0.21 -2.34 6.39 -36.23 -0.23 -2.57 16 3 S 0.18 2.05 23.20 -107.50 -2.49 -0.45 16 4 C 0.08 1.19 7.70 -15.80 -0.12 1.07 16 5 N -0.51 -7.01 10.42 -12.60 -0.13 -7.15 16 6 C 0.40 4.84 11.48 -90.12 -1.03 3.80 16 7 N -0.51 -7.26 2.08 -121.71 -0.25 -7.51 16 8 C 0.07 0.87 5.84 -5.19 -0.03 0.84 16 9 C 0.49 9.03 7.86 -10.99 -0.09 8.95 16 10 O -0.54 -12.71 16.10 5.55 0.09 -12.62 16 11 N -0.70 -13.55 5.07 -54.93 -0.28 -13.83 16 12 C 0.27 6.60 2.56 -69.08 -0.18 6.43 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 14 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 15 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.58 11.32 55.43 0.63 -23.96 16 19 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 C 0.56 9.54 7.50 -14.44 -0.11 9.43 16 24 O -0.52 -9.86 14.78 5.01 0.07 -9.78 16 25 C -0.23 -3.54 6.06 -105.07 -0.64 -4.18 16 26 C -0.03 -0.46 5.96 -103.90 -0.62 -1.08 16 27 C -0.10 -1.19 9.46 36.00 0.34 -0.85 16 28 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 29 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.21 1.54 8.02 -52.48 -0.42 1.12 16 32 H 0.13 1.52 7.43 -51.93 -0.39 1.13 16 33 H 0.12 0.91 8.01 -51.93 -0.42 0.50 16 34 H 0.39 6.21 8.54 -40.82 -0.35 5.86 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.64 7.22 -51.93 -0.37 0.27 16 41 H 0.08 1.24 6.62 -51.93 -0.34 0.89 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -35.28 361.34 -9.42 -44.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.06 Total: 4.13 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.42 Total: 5.89 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.04 Total: -52.44 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.16 Total: -22.40 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.28 -9.42 -44.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330395277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.758 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds