Wall clock time and date at job start Tue Mar 31 2020 18:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 C 1.53004 * 109.47015 * 240.00539 * 2 1 3 5 5 C 1.50699 * 109.47689 * 120.00728 * 2 1 3 6 6 C 1.32512 * 122.84319 * 0.02562 * 5 2 1 7 7 S 1.75539 * 111.00953 * 179.97438 * 6 5 2 8 8 C 1.75669 * 91.96423 * 0.02562 * 7 6 5 9 9 N 1.38500 * 125.12727 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00290 * 0.03250 * 9 8 7 11 11 O 1.21391 * 119.99827 * 359.97438 * 10 9 8 12 12 C 1.49272 * 119.99815 * 179.97438 * 10 9 8 13 13 O 1.21371 * 120.00317 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99817 * 179.97438 * 12 10 9 15 15 C 1.46507 * 120.00211 * 180.02562 * 14 12 10 16 16 C 1.50697 * 109.47484 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99712 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00286 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00319 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46959 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47368 * 119.99667 * 20 18 16 23 23 H 1.48496 * 109.47472 * 240.00075 * 20 18 16 24 24 C 1.37286 * 109.73865 * 0.02562 * 8 7 6 25 25 C 1.43201 * 123.50965 * 180.02562 * 24 8 7 26 26 N 3.57516 * 120.94518 * 0.02562 * 3 1 2 27 27 H 1.09008 * 109.46643 * 299.99545 * 1 2 3 28 28 H 1.08993 * 109.47414 * 59.99087 * 1 2 3 29 29 H 1.08996 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47075 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47604 * 300.00796 * 3 2 1 32 32 H 1.09008 * 109.46873 * 60.00596 * 3 2 1 33 33 H 1.08994 * 109.47054 * 300.00303 * 4 2 1 34 34 H 1.09003 * 109.47122 * 59.99562 * 4 2 1 35 35 H 1.09001 * 109.47354 * 179.97438 * 4 2 1 36 36 H 1.07995 * 124.49940 * 359.96462 * 6 5 2 37 37 H 0.97009 * 119.99628 * 180.02562 * 9 8 7 38 38 H 0.96999 * 120.00106 * 0.02562 * 14 12 10 39 39 H 1.09003 * 109.46747 * 300.00238 * 15 14 12 40 40 H 1.09003 * 109.46781 * 59.99889 * 15 14 12 41 41 H 0.96993 * 119.99889 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0325 -0.7105 1.2303 6 6 1.2225 -1.2355 2.1382 7 16 2.1347 -1.9860 3.4367 8 6 3.6660 -1.5543 2.6918 9 7 4.9158 -1.8522 3.2089 10 6 5.0210 -2.5250 4.3720 11 8 4.0202 -2.8695 4.9665 12 6 6.3680 -2.8465 4.9290 13 8 7.3686 -2.5025 4.3343 14 7 6.4732 -3.5189 6.0923 15 6 7.7953 -3.8340 6.6394 16 6 7.6364 -4.5845 7.9364 17 1 6.6494 -4.8052 8.3152 18 6 8.7511 -4.9896 8.6396 19 7 9.9531 -4.7213 8.1780 20 14 8.5542 -5.9206 10.2469 21 1 7.1097 -6.0958 10.5437 22 1 9.2000 -7.2526 10.1298 23 1 9.1961 -5.1540 11.3449 24 6 3.4368 -0.8762 1.5203 25 6 4.4821 -0.3861 0.6731 26 7 5.3114 0.0002 -0.0014 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6768 1.9563 0.8901 33 1 1.6766 -1.7487 -1.2495 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2496 36 1 0.1442 -1.2054 2.0864 37 1 5.7155 -1.5767 2.7339 38 1 5.6736 -3.7941 6.5674 39 1 8.3452 -4.4504 5.9282 40 1 8.3439 -2.9094 6.8190 41 1 10.7372 -5.0065 8.6725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340399845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:49 Heat of formation + Delta-G solvation = -40.982298 kcal Electronic energy + Delta-G solvation = -25328.949604 eV Core-core repulsion = 21527.638521 eV Total energy + Delta-G solvation = -3801.311083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23428 -40.54959 -39.84825 -37.65009 -37.17386 -36.32956 -34.84808 -34.37032 -30.60541 -29.78718 -28.15717 -28.10913 -26.76495 -25.35832 -24.05250 -22.98117 -21.96335 -20.64278 -20.23509 -18.85948 -18.56919 -17.69198 -17.45656 -17.44367 -16.86619 -16.39228 -16.01708 -15.94057 -15.92716 -15.23772 -15.02177 -15.01365 -14.79521 -14.12339 -14.11059 -14.04156 -14.02985 -13.53357 -13.51854 -13.20339 -13.15426 -12.94278 -12.86010 -12.77216 -12.50194 -12.35201 -12.21888 -12.18180 -11.66506 -11.58806 -11.53590 -11.47506 -10.87681 -10.85106 -10.13357 -9.40882 -9.23347 -8.32294 -6.48405 -0.69049 0.06040 0.28157 0.76858 0.95469 1.11831 1.45004 1.45650 1.55664 1.59205 1.87829 2.31501 2.34212 2.46578 2.95568 3.03820 3.28141 3.57481 3.86430 4.10894 4.12919 4.20923 4.49499 4.55902 4.71712 4.78696 4.91266 4.94441 4.97852 5.08126 5.10712 5.14442 5.16002 5.17918 5.22349 5.34321 5.38612 5.40856 5.53767 5.57966 5.76241 6.06027 6.37625 6.47464 6.59164 6.91400 7.24582 8.79491 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002301 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.585666 B =12165.843551 C =12999.069015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.042 4.042 6 C -0.240 4.240 7 S 0.277 5.723 8 C 0.068 3.932 9 N -0.604 5.604 10 C 0.519 3.481 11 O -0.480 6.480 12 C 0.498 3.502 13 O -0.556 6.556 14 N -0.664 5.664 15 C 0.261 3.739 16 C -0.558 4.558 17 H 0.084 0.916 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.983 3.017 21 H -0.255 1.255 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.106 4.106 25 C 0.290 3.710 26 N -0.454 5.454 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.208 0.792 37 H 0.431 0.569 38 H 0.417 0.583 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.949 8.021 -13.883 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.013 4.013 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.053 4.053 6 C -0.375 4.375 7 S 0.540 5.460 8 C -0.152 4.152 9 N -0.248 5.248 10 C 0.301 3.699 11 O -0.353 6.353 12 C 0.277 3.723 13 O -0.436 6.436 14 N -0.314 5.314 15 C 0.140 3.860 16 C -0.596 4.596 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.806 3.194 21 H -0.178 1.178 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.127 4.127 25 C -0.025 4.025 26 N -0.131 5.131 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.225 0.775 37 H 0.271 0.729 38 H 0.255 0.745 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.836 7.758 -13.439 28.442 hybrid contribution 1.279 0.271 -0.463 1.386 sum -22.558 8.028 -13.902 27.687 Atomic orbital electron populations 1.21930 0.91142 1.03287 1.03320 1.19354 0.97540 0.94034 0.90393 1.21930 0.99839 0.95171 1.03048 1.21930 0.99837 1.01180 0.97040 1.19280 0.87480 1.00329 0.98218 1.25986 1.05789 1.06629 0.99120 1.85381 0.87349 1.53129 1.20092 1.22890 0.92129 1.02543 0.97624 1.42390 1.07607 1.52713 1.22067 1.20269 0.90181 0.78471 0.81014 1.90693 1.37143 1.49736 1.57738 1.19799 0.88518 0.80865 0.83077 1.90774 1.38627 1.54016 1.60214 1.46120 1.12371 1.52259 1.20655 1.18892 0.78667 0.94995 0.93450 1.21587 0.94453 1.37514 1.06065 0.89798 1.25974 0.94379 0.96583 1.02219 1.70110 0.98777 1.46710 1.40868 0.85133 0.79159 0.77628 0.77484 1.17813 1.20460 1.20444 1.15983 0.91036 1.11298 0.94399 1.25057 0.92200 0.92556 0.92686 1.81330 1.10382 1.11107 1.10329 0.90968 0.91211 0.90971 0.95021 0.90922 0.91487 0.91485 0.90929 0.95024 0.77487 0.72940 0.74548 0.97566 0.97558 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 7.24 71.98 0.52 -0.42 16 2 C -0.01 -0.13 0.76 -52.93 -0.04 -0.17 16 3 C -0.14 -1.99 8.30 71.98 0.60 -1.40 16 4 C -0.14 -1.99 8.30 71.98 0.60 -1.40 16 5 C -0.04 -0.63 4.71 -19.45 -0.09 -0.73 16 6 C -0.24 -2.84 9.93 66.68 0.66 -2.18 16 7 S 0.28 4.80 20.31 -56.49 -1.15 3.65 16 8 C 0.07 1.51 7.17 83.41 0.60 2.11 16 9 N -0.60 -15.71 5.35 -306.51 -1.64 -17.36 16 10 C 0.52 15.52 7.84 87.21 0.68 16.21 16 11 O -0.48 -13.94 13.95 -3.37 -0.05 -13.99 16 12 C 0.50 18.91 7.88 87.21 0.69 19.59 16 13 O -0.56 -24.49 16.47 -3.31 -0.05 -24.54 16 14 N -0.66 -27.04 5.54 -468.31 -2.60 -29.64 16 15 C 0.26 13.43 5.43 85.63 0.46 13.90 16 16 C -0.56 -29.07 9.28 25.60 0.24 -28.83 16 17 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 18 C 0.01 0.47 5.46 84.65 0.46 0.93 16 19 N -0.93 -53.51 13.29 21.45 0.28 -53.23 16 20 Si 0.98 41.07 29.54 68.60 2.03 43.09 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 24 C -0.11 -2.20 5.71 -20.70 -0.12 -2.32 16 25 C 0.29 7.19 10.58 88.33 0.93 8.13 16 26 N -0.45 -13.07 18.45 19.01 0.35 -12.72 16 27 H 0.07 0.37 7.71 -2.38 -0.02 0.35 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.37 7.71 -2.39 -0.02 0.35 16 30 H 0.03 0.59 5.98 -2.39 -0.01 0.58 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.03 0.59 5.99 -2.39 -0.01 0.58 16 36 H 0.21 1.08 6.60 -2.91 -0.02 1.06 16 37 H 0.43 11.40 7.66 -92.70 -0.71 10.69 16 38 H 0.42 14.96 7.79 -92.71 -0.72 14.24 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.27 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -65.14 365.14 3.05 -62.09 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.32 Total: 19.20 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.20 Total: 23.42 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -3.60 Total: -112.93 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.10 Total: -38.53 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.15 Total: 3.65 kcal Total: -65.14 3.05 -62.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340399845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds