Wall clock time and date at job start Tue Mar 31 2020 18:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.53001 * 109.46915 * 239.99866 * 2 1 3 5 5 C 1.50702 * 109.46876 * 60.00145 * 4 2 1 6 6 H 1.07998 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99779 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00289 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47208 * 90.00079 * 9 7 5 11 11 H 1.48493 * 109.47332 * 210.00221 * 9 7 5 12 12 H 1.48509 * 109.47085 * 330.00083 * 9 7 5 13 13 C 1.53004 * 109.47073 * 120.00205 * 2 1 3 14 14 N 1.46494 * 109.46820 * 299.99437 * 13 2 1 15 15 C 1.34778 * 119.99711 * 180.02562 * 14 13 2 16 16 O 1.21374 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.49276 * 119.99866 * 180.02562 * 15 14 13 18 18 O 1.21393 * 120.00329 * 359.97438 * 17 15 14 19 19 N 1.34778 * 119.99866 * 180.02562 * 17 15 14 20 20 C 1.38498 * 119.99952 * 179.97438 * 19 17 15 21 21 S 1.75666 * 125.13065 * 359.97137 * 20 19 17 22 22 C 1.75539 * 91.96391 * 180.02562 * 21 20 19 23 23 C 1.32512 * 111.01092 * 0.02562 * 22 21 20 24 24 C 1.37293 * 125.13201 * 180.02562 * 20 19 17 25 25 C 1.43205 * 123.50561 * 359.95940 * 24 20 19 26 26 N 9.47779 * 98.60285 * 102.36877 * 2 1 3 27 27 H 1.09000 * 109.47007 * 299.99982 * 1 2 3 28 28 H 1.08994 * 109.47688 * 60.00146 * 1 2 3 29 29 H 1.09005 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47193 * 300.00283 * 3 2 1 32 32 H 1.09000 * 109.47129 * 60.00093 * 3 2 1 33 33 H 1.08997 * 109.47189 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47423 * 300.00090 * 4 2 1 35 35 H 0.96999 * 119.99955 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46708 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47199 * 59.99949 * 13 2 1 38 38 H 0.97004 * 120.00627 * 0.02562 * 14 13 2 39 39 H 0.97005 * 120.00251 * 359.97438 * 19 17 15 40 40 H 1.08008 * 124.49307 * 179.73092 * 22 21 20 41 41 H 1.08005 * 122.84331 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5509 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4409 -5.6613 11 1 1.0835 -0.5806 -6.3614 12 1 -0.0609 1.0352 -4.9613 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4453 15 6 1.8778 -0.4908 3.6694 16 8 2.5763 -1.4772 3.7809 17 6 1.3798 0.2126 4.8883 18 8 0.6816 1.1994 4.7770 19 7 1.7063 -0.2473 6.1124 20 6 1.2447 0.4056 7.2432 21 16 0.2302 1.8397 7.2392 22 6 0.1941 1.8928 8.9934 23 6 0.8987 0.8984 9.5134 24 6 1.5119 0.0304 8.5366 25 6 2.3151 -1.1042 8.8806 26 7 2.9477 -2.0073 9.1536 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8614 -1.8823 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9938 0.7579 2.3564 39 1 2.2645 -1.0356 6.2014 40 1 -0.3289 2.6400 9.5720 41 1 1.0052 0.7500 10.5779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340501784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:04 Heat of formation + Delta-G solvation = -17.213049 kcal Electronic energy + Delta-G solvation = -25215.062002 eV Core-core repulsion = 21414.781631 eV Total energy + Delta-G solvation = -3800.280371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38906 -39.39728 -38.44452 -37.36718 -36.28297 -35.40439 -33.81364 -32.19059 -29.82706 -27.59921 -26.96514 -26.61072 -25.66919 -24.06405 -22.74834 -21.79848 -20.78259 -19.80046 -19.07284 -17.95535 -17.18150 -16.67016 -16.57251 -16.36517 -15.65643 -15.27648 -15.09260 -14.77760 -14.56368 -14.34828 -14.24964 -13.65365 -13.61253 -13.25713 -13.10005 -12.89562 -12.88642 -12.41815 -12.32164 -12.27405 -12.12561 -11.55873 -11.28872 -11.16014 -11.08149 -10.90584 -10.71981 -10.54500 -10.33722 -10.06328 -9.99977 -9.30123 -9.17771 -9.02161 -8.88410 -8.67153 -8.41839 -6.05938 -4.07555 0.03773 0.66393 1.10005 1.42174 1.58838 1.83977 2.33257 2.79503 3.12457 3.21000 3.27533 3.35011 3.36565 3.67012 4.13420 4.40524 4.45522 4.67794 5.16800 5.27195 5.29470 5.31555 5.44801 5.61146 5.62454 5.66591 5.99601 6.03621 6.05258 6.15766 6.21839 6.24647 6.53995 6.57179 6.84587 6.94324 6.97689 7.00924 7.16453 7.25268 7.55127 7.65986 7.74008 7.91942 8.32996 8.96899 9.56076 11.05398 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.002121 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.144271 B =13197.238427 C =14023.018125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.131 4.131 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.123 3.877 14 N -0.678 5.678 15 C 0.507 3.493 16 O -0.515 6.515 17 C 0.504 3.496 18 O -0.477 6.477 19 N -0.607 5.607 20 C 0.088 3.912 21 S 0.274 5.726 22 C -0.266 4.266 23 C -0.075 4.075 24 C -0.111 4.111 25 C 0.270 3.730 26 N -0.415 5.415 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.413 0.587 39 H 0.433 0.567 40 H 0.174 0.826 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 8.396 24.554 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.001 3.999 14 N -0.331 5.331 15 C 0.285 3.715 16 O -0.392 6.392 17 C 0.286 3.714 18 O -0.350 6.350 19 N -0.252 5.252 20 C -0.133 4.133 21 S 0.534 5.466 22 C -0.401 4.401 23 C -0.105 4.105 24 C -0.132 4.132 25 C -0.046 4.046 26 N -0.092 5.092 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.273 0.727 40 H 0.192 0.808 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.495 7.765 23.585 25.431 hybrid contribution 0.176 -0.222 0.191 0.342 sum -5.319 7.543 23.776 25.505 Atomic orbital electron populations 1.21800 0.94981 1.01366 1.00629 1.20953 0.95744 0.96020 0.94600 1.21801 1.00659 0.95694 1.00627 1.19101 0.96439 0.95262 0.89308 1.21155 1.31342 1.12166 0.90411 0.92172 1.25015 0.95279 0.95054 0.99143 1.69957 1.36870 1.22940 1.23544 0.86632 0.79210 0.79402 0.82972 1.20749 1.21336 1.19907 1.21956 0.99574 0.96386 0.81956 1.46076 1.50714 1.31556 1.04735 1.19322 0.82730 0.85231 0.84213 1.90835 1.36898 1.25205 1.86254 1.20944 0.80847 0.84802 0.84770 1.90721 1.34700 1.24307 1.85259 1.42528 1.49438 1.30587 1.02682 1.22764 1.02050 1.00470 0.88060 1.85427 1.44062 1.17973 0.99094 1.25803 1.08475 1.05108 1.00720 1.20511 0.97142 0.93277 0.99536 1.15983 1.08839 0.97998 0.90334 1.24900 0.92914 0.92307 0.94502 1.81322 1.10563 1.10793 1.06496 0.95071 0.91086 0.93194 0.93188 0.91098 0.95060 0.96214 0.96205 0.92979 0.90729 0.90725 0.74903 0.72691 0.80817 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.06 7.65 -34.44 -0.26 -13.33 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.12 1.93 4.56 -4.04 -0.02 1.91 16 14 N -0.68 -8.88 4.95 -60.79 -0.30 -9.18 16 15 C 0.51 6.58 7.88 -11.67 -0.09 6.49 16 16 O -0.52 -7.95 16.47 5.48 0.09 -7.86 16 17 C 0.50 5.53 7.84 -11.67 -0.09 5.44 16 18 O -0.48 -5.40 13.95 5.46 0.08 -5.33 16 19 N -0.61 -5.84 5.35 -10.82 -0.06 -5.90 16 20 C 0.09 0.76 7.17 -14.88 -0.11 0.65 16 21 S 0.27 1.98 20.31 -107.50 -2.18 -0.21 16 22 C -0.27 -1.33 11.08 28.82 0.32 -1.01 16 23 C -0.07 -0.43 10.26 -39.09 -0.40 -0.83 16 24 C -0.11 -0.90 5.88 -105.91 -0.62 -1.52 16 25 C 0.27 2.71 15.02 -22.47 -0.34 2.37 16 26 N -0.41 -5.10 18.54 41.84 0.78 -4.33 16 27 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.26 6.62 -51.92 -0.34 0.92 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.41 4.91 5.63 -40.82 -0.23 4.68 16 39 H 0.43 4.06 7.66 -40.82 -0.31 3.75 16 40 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 41 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -30.01 366.40 -6.43 -36.44 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.76 Total: 2.82 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.31 Total: -2.70 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 1.15 Total: -44.34 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.17 Total: -13.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.18 Total: -0.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.01 -6.43 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340501784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.230 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds