Wall clock time and date at job start Tue Mar 31 2020 18:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47192 * 2 1 4 4 C 1.53001 * 109.46915 * 239.99866 * 2 1 3 5 5 C 1.50702 * 109.46876 * 60.00145 * 4 2 1 6 6 H 1.07998 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99779 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00289 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47208 * 90.00079 * 9 7 5 11 11 H 1.48493 * 109.47332 * 210.00221 * 9 7 5 12 12 H 1.48509 * 109.47085 * 330.00083 * 9 7 5 13 13 C 1.53004 * 109.47073 * 120.00205 * 2 1 3 14 14 N 1.46494 * 109.46820 * 299.99437 * 13 2 1 15 15 C 1.34778 * 119.99711 * 180.02562 * 14 13 2 16 16 O 1.21374 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.49276 * 119.99866 * 180.02562 * 15 14 13 18 18 O 1.21393 * 120.00329 * 359.97438 * 17 15 14 19 19 N 1.34778 * 119.99866 * 180.02562 * 17 15 14 20 20 C 1.38498 * 119.99952 * 179.97438 * 19 17 15 21 21 S 1.75666 * 125.13065 * 359.97137 * 20 19 17 22 22 C 1.75539 * 91.96391 * 180.02562 * 21 20 19 23 23 C 1.32512 * 111.01092 * 0.02562 * 22 21 20 24 24 C 1.37293 * 125.13201 * 180.02562 * 20 19 17 25 25 C 1.43205 * 123.50561 * 359.95940 * 24 20 19 26 26 N 9.47779 * 98.60285 * 102.36877 * 2 1 3 27 27 H 1.09000 * 109.47007 * 299.99982 * 1 2 3 28 28 H 1.08994 * 109.47688 * 60.00146 * 1 2 3 29 29 H 1.09005 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47131 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47193 * 300.00283 * 3 2 1 32 32 H 1.09000 * 109.47129 * 60.00093 * 3 2 1 33 33 H 1.08997 * 109.47189 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47423 * 300.00090 * 4 2 1 35 35 H 0.96999 * 119.99955 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46708 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47199 * 59.99949 * 13 2 1 38 38 H 0.97004 * 120.00627 * 0.02562 * 14 13 2 39 39 H 0.97005 * 120.00251 * 359.97438 * 19 17 15 40 40 H 1.08008 * 124.49307 * 179.73092 * 22 21 20 41 41 H 1.08005 * 122.84331 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5509 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4409 -5.6613 11 1 1.0835 -0.5806 -6.3614 12 1 -0.0609 1.0352 -4.9613 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4453 15 6 1.8778 -0.4908 3.6694 16 8 2.5763 -1.4772 3.7809 17 6 1.3798 0.2126 4.8883 18 8 0.6816 1.1994 4.7770 19 7 1.7063 -0.2473 6.1124 20 6 1.2447 0.4056 7.2432 21 16 0.2302 1.8397 7.2392 22 6 0.1941 1.8928 8.9934 23 6 0.8987 0.8984 9.5134 24 6 1.5119 0.0304 8.5366 25 6 2.3151 -1.1042 8.8806 26 7 2.9477 -2.0073 9.1536 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8614 -1.8823 -4.7337 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.9938 0.7579 2.3564 39 1 2.2645 -1.0356 6.2014 40 1 -0.3289 2.6400 9.5720 41 1 1.0052 0.7500 10.5779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340501784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:03 Heat of formation + Delta-G solvation = -36.502692 kcal Electronic energy + Delta-G solvation = -25215.898464 eV Core-core repulsion = 21414.781631 eV Total energy + Delta-G solvation = -3801.116833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.30016 -40.42277 -39.16734 -38.73938 -37.10981 -36.16755 -35.23373 -33.96896 -30.47442 -29.23778 -28.31349 -27.96168 -26.63121 -25.25592 -24.17224 -22.47500 -21.67621 -20.73479 -20.00403 -19.16642 -18.34533 -18.15391 -17.49521 -17.38104 -16.68048 -16.37984 -16.13317 -16.08877 -15.48079 -15.30254 -15.18975 -14.88044 -14.78203 -14.39375 -14.33815 -13.93445 -13.83573 -13.80318 -13.60817 -13.26025 -12.96694 -12.87951 -12.71625 -12.60686 -12.32294 -12.23573 -12.17859 -11.99268 -11.81702 -11.55111 -11.13483 -10.90572 -10.80883 -10.49638 -10.36909 -9.43981 -9.27976 -8.12937 -6.19835 -0.67897 0.08322 0.25862 0.74481 1.06711 1.12267 1.43786 1.44538 1.54254 1.57311 1.82404 2.27150 2.39341 2.45918 2.96244 3.13639 3.22140 3.85890 3.89087 4.05265 4.19675 4.20312 4.57851 4.65369 4.68914 4.70164 4.84960 4.95836 4.96382 5.13765 5.14975 5.21108 5.21894 5.39228 5.44498 5.52508 5.53899 5.57467 5.80232 5.90933 5.95149 6.26402 6.33073 6.39367 6.69934 6.95275 7.47795 8.99239 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.002121 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.144271 B =13197.238427 C =14023.018125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 C -0.126 4.126 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.072 0.928 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.136 3.864 14 N -0.671 5.671 15 C 0.510 3.490 16 O -0.543 6.543 17 C 0.514 3.486 18 O -0.479 6.479 19 N -0.604 5.604 20 C 0.065 3.935 21 S 0.270 5.730 22 C -0.241 4.241 23 C -0.081 4.081 24 C -0.109 4.109 25 C 0.289 3.711 26 N -0.460 5.460 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.067 0.933 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.422 0.578 39 H 0.432 0.568 40 H 0.207 0.793 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.786 11.024 26.559 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 C -0.183 4.183 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.013 3.987 14 N -0.324 5.324 15 C 0.290 3.710 16 O -0.421 6.421 17 C 0.296 3.704 18 O -0.353 6.353 19 N -0.248 5.248 20 C -0.155 4.155 21 S 0.531 5.469 22 C -0.376 4.376 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.026 4.026 26 N -0.138 5.138 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.262 0.738 39 H 0.272 0.728 40 H 0.224 0.776 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.385 10.434 25.625 28.636 hybrid contribution 0.735 -1.010 -0.307 1.287 sum -6.650 9.424 25.318 27.821 Atomic orbital electron populations 1.21738 0.93609 1.01268 1.01694 1.20733 0.96730 0.96339 0.92737 1.21741 1.00224 0.94646 1.01716 1.18976 0.94560 0.94338 0.91930 1.21589 1.30308 1.12042 0.91063 0.90991 1.25907 0.95764 0.95865 1.02612 1.70106 1.38820 1.24879 1.24030 0.85583 0.79173 0.78114 0.78996 1.20275 1.21743 1.18422 1.21556 0.98913 0.95893 0.82373 1.45822 1.50833 1.31641 1.04100 1.19626 0.81931 0.84753 0.84718 1.90829 1.38025 1.26470 1.86730 1.20282 0.81079 0.84660 0.84427 1.90731 1.34928 1.24252 1.85354 1.42392 1.49224 1.30525 1.02677 1.22953 1.03356 1.01503 0.87667 1.85458 1.43249 1.16906 1.01263 1.26120 1.07251 1.04980 0.99237 1.20738 0.97068 0.92916 1.00250 1.16236 1.08455 0.97537 0.90839 1.25186 0.92153 0.92036 0.93217 1.81337 1.12128 1.12242 1.08098 0.91442 0.92479 0.93940 0.93944 0.92445 0.91433 0.99109 0.99093 0.93232 0.91713 0.91707 0.73840 0.72818 0.77571 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 3 C -0.13 -3.95 8.05 71.98 0.58 -3.37 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.41 7.65 25.60 0.20 -26.21 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -55.58 13.29 21.45 0.28 -55.29 16 9 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 C 0.14 4.25 4.56 86.38 0.39 4.65 16 14 N -0.67 -16.66 4.95 -464.58 -2.30 -18.96 16 15 C 0.51 12.83 7.88 87.22 0.69 13.52 16 16 O -0.54 -16.78 16.47 -3.32 -0.05 -16.83 16 17 C 0.51 10.57 7.84 87.22 0.68 11.25 16 18 O -0.48 -9.82 13.95 -3.38 -0.05 -9.87 16 19 N -0.60 -11.02 5.35 -306.49 -1.64 -12.66 16 20 C 0.07 1.02 7.17 83.42 0.60 1.62 16 21 S 0.27 3.17 20.31 -56.49 -1.15 2.02 16 22 C -0.24 -1.47 11.08 66.68 0.74 -0.73 16 23 C -0.08 -0.67 10.26 22.69 0.23 -0.43 16 24 C -0.11 -1.56 5.88 -20.70 -0.12 -1.68 16 25 C 0.29 5.57 15.02 88.33 1.33 6.90 16 26 N -0.46 -11.30 18.54 19.00 0.35 -10.94 16 27 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 28 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 29 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.96 6.62 -2.38 -0.02 1.94 16 32 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.15 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.42 8.92 5.63 -92.71 -0.52 8.40 16 39 H 0.43 7.99 7.66 -92.70 -0.71 7.28 16 40 H 0.21 -0.07 8.06 -2.91 -0.02 -0.09 16 41 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -66.92 366.40 3.80 -63.12 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.13 Total: 12.63 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.45 Total: 2.07 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.30 Total: -97.86 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.10 Total: -26.70 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.15 Total: 2.02 kcal Total: -66.92 3.80 -63.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340501784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.621 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds