Wall clock time and date at job start Tue Mar 31 2020 18:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99799 * 2 1 4 4 N 1.46499 * 109.46981 * 124.99699 * 3 2 1 5 5 C 1.46501 * 120.00280 * 274.94981 * 4 3 2 6 6 C 1.50697 * 109.46889 * 263.11128 * 5 4 3 7 7 H 1.08000 * 120.00310 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00115 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00275 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47278 * 89.99484 * 10 8 6 12 12 H 1.48495 * 109.47158 * 209.99899 * 10 8 6 13 13 H 1.48498 * 109.46841 * 329.99657 * 10 8 6 14 14 C 1.34779 * 119.99824 * 94.94683 * 4 3 2 15 15 O 1.21366 * 120.00138 * 3.68357 * 14 4 3 16 16 C 1.49263 * 120.00199 * 183.68501 * 14 4 3 17 17 O 1.21422 * 119.99689 * 354.26561 * 16 14 4 18 18 N 1.34770 * 120.00324 * 174.26079 * 16 14 4 19 19 C 1.39431 * 120.00086 * 180.02562 * 18 16 14 20 20 S 1.76196 * 126.07696 * 0.02562 * 19 18 16 21 21 C 1.70950 * 90.33037 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.32920 * 0.02562 * 21 20 19 23 23 C 1.31789 * 117.20824 * 359.97438 * 22 21 20 24 24 C 1.50700 * 122.85837 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.49496 * 8.64979 * 24 23 22 26 26 C 1.52997 * 117.49766 * 300.02888 * 24 23 22 27 27 H 1.08008 * 119.99756 * 179.97438 * 1 2 3 28 28 H 1.07992 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99708 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47352 * 5.00284 * 3 2 1 31 31 H 1.09000 * 109.47259 * 244.99614 * 3 2 1 32 32 H 1.09004 * 109.46904 * 23.11084 * 5 4 3 33 33 H 1.09004 * 109.47395 * 143.11162 * 5 4 3 34 34 H 0.96994 * 120.00126 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99958 * 0.02562 * 18 16 14 36 36 H 1.07994 * 124.83457 * 179.97438 * 21 20 19 37 37 H 1.08999 * 115.55437 * 154.35417 * 24 23 22 38 38 H 1.08994 * 117.50131 * 359.97438 * 25 24 23 39 39 H 1.09000 * 117.49379 * 145.02598 * 25 24 23 40 40 H 1.09003 * 117.50080 * 214.97382 * 26 24 23 41 41 H 1.09000 * 117.50450 * 359.97255 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5286 1.7632 2.4521 6 6 2.8688 3.2173 2.6542 7 1 3.3806 3.7653 1.8770 8 6 2.5276 3.8478 3.8319 9 7 1.9048 3.1804 4.7787 10 14 2.9486 5.6505 4.0823 11 1 1.8267 6.4930 3.5958 12 1 3.1726 5.9105 5.5270 13 1 4.1812 5.9809 3.3229 14 6 4.2773 0.9598 0.9575 15 8 4.6795 0.6666 -0.1495 16 6 5.2044 0.9082 2.1261 17 8 4.8328 1.3001 3.2136 18 7 6.4539 0.4265 1.9744 19 6 7.3197 0.3778 3.0662 20 16 6.9498 0.9000 4.7079 21 6 8.5224 0.4592 5.2130 22 7 9.1951 -0.0160 4.2205 23 6 8.5859 -0.0763 3.0535 24 6 9.2513 -0.6079 1.8102 25 6 10.6176 -1.2774 1.9716 26 6 10.5149 0.1055 1.3253 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4488 1.6300 2.5183 33 1 3.0164 1.1655 3.2222 34 1 1.6650 3.6239 5.6073 35 1 6.7509 0.1137 1.1056 36 1 8.8991 0.5646 6.2196 37 1 8.5791 -1.0114 1.0530 38 1 11.0352 -1.3330 2.9769 39 1 10.8443 -2.1216 1.3205 40 1 10.6742 0.1711 0.2489 41 1 10.8647 0.9597 1.9051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340615632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:26 Heat of formation + Delta-G solvation = 46.658796 kcal Electronic energy + Delta-G solvation = -26508.188432 eV Core-core repulsion = 22710.677752 eV Total energy + Delta-G solvation = -3797.510680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67385 -39.80575 -38.22472 -36.42455 -36.10029 -34.73751 -33.34486 -32.16563 -29.38917 -27.65267 -26.67149 -25.21893 -23.57054 -22.99689 -22.50810 -22.33946 -20.34510 -19.62896 -19.06351 -17.69745 -17.48798 -16.67453 -16.50392 -16.04643 -15.46535 -15.41469 -15.13984 -14.69119 -14.47567 -14.40190 -14.24921 -13.75090 -13.66657 -13.03299 -12.82192 -12.38259 -12.26925 -11.84186 -11.61187 -11.52890 -11.29296 -11.22564 -11.12629 -10.97939 -10.90844 -10.72917 -10.56499 -10.36280 -10.11313 -9.78707 -9.48595 -9.26643 -8.86105 -8.75956 -8.38360 -8.04430 -7.82986 -6.10223 -4.13805 0.83081 1.32528 1.91149 2.00497 2.34907 2.80348 2.82034 3.25912 3.33139 3.36606 3.64644 3.94887 4.02226 4.35469 4.38982 4.68300 4.82444 4.84985 5.03230 5.20115 5.26245 5.30580 5.37190 5.47661 5.61605 5.73390 5.75934 5.94959 6.01555 6.08197 6.15273 6.18096 6.37601 6.49069 6.77645 6.90625 7.04016 7.28071 7.33277 7.77216 7.90066 7.94332 8.03440 8.12236 8.43571 8.87174 9.49830 10.98338 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004435 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.995090 B = 6312.258471 C = 8151.998372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.138 3.862 4 N -0.551 5.551 5 C 0.222 3.778 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.515 3.485 15 O -0.556 6.556 16 C 0.481 3.519 17 O -0.421 6.421 18 N -0.612 5.612 19 C 0.014 3.986 20 S 0.260 5.740 21 C -0.060 4.060 22 N -0.447 5.447 23 C 0.029 3.971 24 C -0.085 4.085 25 C -0.158 4.158 26 C -0.166 4.166 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.424 0.576 36 H 0.194 0.806 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -7.765 -4.434 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.280 5.280 5 C 0.103 3.897 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.297 3.703 15 O -0.438 6.438 16 C 0.263 3.737 17 O -0.289 6.289 18 N -0.261 5.261 19 C -0.206 4.206 20 S 0.511 5.489 21 C -0.357 4.357 22 N -0.160 5.160 23 C -0.107 4.107 24 C -0.106 4.106 25 C -0.196 4.196 26 C -0.204 4.204 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.263 0.737 36 H 0.211 0.789 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.158 -7.289 -3.375 11.449 hybrid contribution 0.680 0.611 -0.797 1.212 sum 8.838 -6.678 -4.172 11.837 Atomic orbital electron populations 1.23818 0.95700 1.01855 1.00608 1.23274 0.96184 0.98818 0.99829 1.20638 0.92160 0.95493 0.90146 1.48280 1.07036 1.59051 1.13630 1.20130 0.96191 0.96544 0.76788 1.21206 1.38849 0.94510 1.01634 0.92738 1.24788 0.94809 0.98000 0.95481 1.69913 1.39797 1.36326 1.06430 0.86599 0.78780 0.85156 0.77505 1.20670 1.20992 1.19996 1.19340 0.83665 0.79791 0.87536 1.90677 1.76446 1.51536 1.25117 1.20749 0.82411 0.79621 0.90953 1.90914 1.71836 1.40048 1.26096 1.42609 1.11270 1.61463 1.10738 1.23484 0.94196 1.07937 0.94936 1.85430 1.10553 1.56543 0.96403 1.28418 0.98515 1.06011 1.02740 1.65986 1.36176 1.15779 0.98079 1.19018 0.89658 1.08062 0.93972 1.20284 0.90546 1.05131 0.94603 1.22900 0.98254 0.95526 1.02889 1.22972 1.00229 0.96540 1.00612 0.88603 0.88231 0.87671 0.89201 0.89269 0.94682 0.90864 0.92725 0.73682 0.78898 0.86890 0.87686 0.88832 0.88525 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.01 0.42 -1.98 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.79 16 3 C 0.14 2.35 5.90 -5.20 -0.03 2.32 16 4 N -0.55 -11.20 2.46 -177.02 -0.44 -11.64 16 5 C 0.22 5.28 4.79 -5.19 -0.02 5.26 16 6 C -0.52 -13.74 8.31 -34.44 -0.29 -14.02 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 9 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 10 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.51 10.24 7.66 -11.67 -0.09 10.15 16 15 O -0.56 -10.97 15.97 5.48 0.09 -10.88 16 16 C 0.48 9.36 7.72 -11.68 -0.09 9.27 16 17 O -0.42 -9.31 9.99 5.43 0.05 -9.25 16 18 N -0.61 -9.96 5.39 -11.10 -0.06 -10.02 16 19 C 0.01 0.22 7.17 -15.41 -0.11 0.11 16 20 S 0.26 4.15 20.45 -107.50 -2.20 1.95 16 21 C -0.06 -0.81 12.21 51.56 0.63 -0.18 16 22 N -0.45 -6.62 9.83 -11.72 -0.12 -6.74 16 23 C 0.03 0.43 6.40 -83.93 -0.54 -0.11 16 24 C -0.08 -1.03 5.82 -91.77 -0.53 -1.57 16 25 C -0.16 -1.68 10.09 -26.73 -0.27 -1.95 16 26 C -0.17 -1.79 10.23 -26.73 -0.27 -2.06 16 27 H 0.10 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.10 16 31 H 0.09 1.47 7.24 -51.93 -0.38 1.10 16 32 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 33 H 0.07 1.89 5.41 -51.93 -0.28 1.61 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.42 5.99 7.19 -40.82 -0.29 5.69 16 36 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.11 1.22 7.40 -51.93 -0.38 0.84 16 38 H 0.10 1.22 7.73 -51.93 -0.40 0.82 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -30.05 367.47 -8.12 -38.16 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.05 Total: 6.53 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.65 Total: 4.32 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.13 Total: -52.39 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.14 Total: -20.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.20 Total: 1.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.05 -8.12 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.822 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds