Wall clock time and date at job start Tue Mar 31 2020 18:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99799 * 2 1 4 4 N 1.46499 * 109.46981 * 124.99699 * 3 2 1 5 5 C 1.46501 * 120.00280 * 274.94981 * 4 3 2 6 6 C 1.50697 * 109.46889 * 263.11128 * 5 4 3 7 7 H 1.08000 * 120.00310 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00115 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00275 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47278 * 89.99484 * 10 8 6 12 12 H 1.48495 * 109.47158 * 209.99899 * 10 8 6 13 13 H 1.48498 * 109.46841 * 329.99657 * 10 8 6 14 14 C 1.34779 * 119.99824 * 94.94683 * 4 3 2 15 15 O 1.21366 * 120.00138 * 3.68357 * 14 4 3 16 16 C 1.49263 * 120.00199 * 183.68501 * 14 4 3 17 17 O 1.21422 * 119.99689 * 354.26561 * 16 14 4 18 18 N 1.34770 * 120.00324 * 174.26079 * 16 14 4 19 19 C 1.39431 * 120.00086 * 180.02562 * 18 16 14 20 20 S 1.76196 * 126.07696 * 0.02562 * 19 18 16 21 21 C 1.70950 * 90.33037 * 179.97438 * 20 19 18 22 22 N 1.28971 * 110.32920 * 0.02562 * 21 20 19 23 23 C 1.31789 * 117.20824 * 359.97438 * 22 21 20 24 24 C 1.50700 * 122.85837 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.49496 * 8.64979 * 24 23 22 26 26 C 1.52997 * 117.49766 * 300.02888 * 24 23 22 27 27 H 1.08008 * 119.99756 * 179.97438 * 1 2 3 28 28 H 1.07992 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99708 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47352 * 5.00284 * 3 2 1 31 31 H 1.09000 * 109.47259 * 244.99614 * 3 2 1 32 32 H 1.09004 * 109.46904 * 23.11084 * 5 4 3 33 33 H 1.09004 * 109.47395 * 143.11162 * 5 4 3 34 34 H 0.96994 * 120.00126 * 179.97438 * 9 8 6 35 35 H 0.96998 * 119.99958 * 0.02562 * 18 16 14 36 36 H 1.07994 * 124.83457 * 179.97438 * 21 20 19 37 37 H 1.08999 * 115.55437 * 154.35417 * 24 23 22 38 38 H 1.08994 * 117.50131 * 359.97438 * 25 24 23 39 39 H 1.09000 * 117.49379 * 145.02598 * 25 24 23 40 40 H 1.09003 * 117.50080 * 214.97382 * 26 24 23 41 41 H 1.09000 * 117.50450 * 359.97255 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5286 1.7632 2.4521 6 6 2.8688 3.2173 2.6542 7 1 3.3806 3.7653 1.8770 8 6 2.5276 3.8478 3.8319 9 7 1.9048 3.1804 4.7787 10 14 2.9486 5.6505 4.0823 11 1 1.8267 6.4930 3.5958 12 1 3.1726 5.9105 5.5270 13 1 4.1812 5.9809 3.3229 14 6 4.2773 0.9598 0.9575 15 8 4.6795 0.6666 -0.1495 16 6 5.2044 0.9082 2.1261 17 8 4.8328 1.3001 3.2136 18 7 6.4539 0.4265 1.9744 19 6 7.3197 0.3778 3.0662 20 16 6.9498 0.9000 4.7079 21 6 8.5224 0.4592 5.2130 22 7 9.1951 -0.0160 4.2205 23 6 8.5859 -0.0763 3.0535 24 6 9.2513 -0.6079 1.8102 25 6 10.6176 -1.2774 1.9716 26 6 10.5149 0.1055 1.3253 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 1.4488 1.6300 2.5183 33 1 3.0164 1.1655 3.2222 34 1 1.6650 3.6239 5.6073 35 1 6.7509 0.1137 1.1056 36 1 8.8991 0.5646 6.2196 37 1 8.5791 -1.0114 1.0530 38 1 11.0352 -1.3330 2.9769 39 1 10.8443 -2.1216 1.3205 40 1 10.6742 0.1711 0.2489 41 1 10.8647 0.9597 1.9051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340615632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:25 Heat of formation + Delta-G solvation = 28.705574 kcal Electronic energy + Delta-G solvation = -26508.966942 eV Core-core repulsion = 22710.677752 eV Total energy + Delta-G solvation = -3798.289190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.12328 -41.04010 -39.71785 -37.64144 -37.36063 -36.08569 -35.03209 -33.84095 -30.62334 -29.45947 -28.11355 -26.47479 -25.28122 -24.14438 -23.98299 -23.17813 -21.68855 -20.83946 -20.33870 -19.12637 -18.83309 -18.48010 -17.92118 -17.46554 -17.02808 -16.84563 -16.37640 -16.12916 -16.00012 -15.68524 -15.30071 -15.03778 -14.88139 -14.58876 -14.30834 -14.14022 -13.65853 -13.25963 -13.07231 -12.87264 -12.78601 -12.46998 -12.40207 -12.36746 -12.32487 -12.28909 -11.95246 -11.69149 -11.65360 -11.27429 -10.87572 -10.55357 -10.43861 -10.12474 -10.00131 -9.69037 -9.07194 -8.14588 -6.23843 -0.42240 0.13092 0.44563 0.77720 1.12679 1.38653 1.40971 1.49299 1.52627 1.66392 2.13488 2.39774 2.59447 3.02860 3.19210 3.27946 3.31830 3.71269 3.94792 4.01579 4.13169 4.15867 4.30078 4.43869 4.44922 4.72207 4.75998 4.80782 4.81723 4.92968 5.01655 5.14340 5.23482 5.34578 5.37355 5.42708 5.66071 5.74088 5.76734 5.85136 6.09744 6.23083 6.55866 6.72367 6.77926 6.93032 7.42781 8.93377 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010360 B = 0.004435 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.995090 B = 6312.258471 C = 8151.998372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.136 3.864 4 N -0.557 5.557 5 C 0.242 3.758 6 C -0.527 4.527 7 H 0.044 0.956 8 C 0.029 3.971 9 N -0.915 5.915 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.513 3.487 15 O -0.555 6.555 16 C 0.480 3.520 17 O -0.456 6.456 18 N -0.596 5.596 19 C -0.016 4.016 20 S 0.207 5.793 21 C -0.027 4.027 22 N -0.462 5.462 23 C 0.044 3.956 24 C -0.109 4.109 25 C -0.146 4.146 26 C -0.158 4.158 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.021 0.979 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.433 0.567 36 H 0.231 0.769 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.939 -8.186 -5.177 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.015 3.985 4 N -0.286 5.286 5 C 0.122 3.878 6 C -0.566 4.566 7 H 0.062 0.938 8 C -0.171 4.171 9 N -0.554 5.554 10 Si 0.772 3.228 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.295 3.705 15 O -0.436 6.436 16 C 0.261 3.739 17 O -0.326 6.326 18 N -0.246 5.246 19 C -0.234 4.234 20 S 0.459 5.541 21 C -0.324 4.324 22 N -0.175 5.175 23 C -0.092 4.092 24 C -0.130 4.130 25 C -0.183 4.183 26 C -0.196 4.196 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.274 0.726 36 H 0.247 0.753 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.361 -7.727 -4.164 12.832 hybrid contribution 0.431 0.666 -0.566 0.975 sum 9.792 -7.061 -4.730 12.966 Atomic orbital electron populations 1.24075 0.95065 1.03256 0.97394 1.23136 0.96800 0.97717 1.02719 1.20792 0.91876 0.96848 0.89034 1.48231 1.07791 1.59229 1.13319 1.19625 0.94841 0.95160 0.78159 1.21370 1.38223 0.95650 1.01325 0.93792 1.25447 0.94839 1.01495 0.95343 1.70005 1.40871 1.37729 1.06819 0.85747 0.78533 0.81125 0.77377 1.19582 1.20645 1.20334 1.19463 0.83640 0.79586 0.87782 1.90661 1.76369 1.51546 1.25068 1.20695 0.83181 0.79648 0.90343 1.90909 1.72783 1.42002 1.26938 1.42331 1.10310 1.60599 1.11332 1.23494 0.94832 1.10500 0.94542 1.85619 1.12977 1.57755 0.97763 1.29004 0.96543 1.03030 1.03841 1.66108 1.36170 1.16808 0.98397 1.19484 0.89044 1.05831 0.94830 1.20511 0.91543 1.06806 0.94090 1.22957 0.96258 0.96256 1.02840 1.23025 0.98498 0.96258 1.01775 0.86206 0.87741 0.87601 0.89305 0.88905 0.96078 0.92734 0.92663 0.72590 0.75264 0.85596 0.88752 0.86428 0.86338 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 14.32 67.78 0.97 -2.99 16 2 C -0.18 -5.43 9.84 25.64 0.25 -5.18 16 3 C 0.14 4.64 5.90 85.63 0.50 5.15 16 4 N -0.56 -23.07 2.46 -832.31 -2.05 -25.12 16 5 C 0.24 11.87 4.79 85.63 0.41 12.28 16 6 C -0.53 -28.23 8.31 25.60 0.21 -28.02 16 7 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 8 C 0.03 1.58 5.46 84.65 0.46 2.04 16 9 N -0.91 -51.93 13.29 21.45 0.28 -51.65 16 10 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.51 20.71 7.66 87.21 0.67 21.38 16 15 O -0.56 -21.76 15.97 -3.30 -0.05 -21.82 16 16 C 0.48 19.15 7.72 87.21 0.67 19.82 16 17 O -0.46 -20.94 9.99 -3.47 -0.03 -20.97 16 18 N -0.60 -19.55 5.39 -307.35 -1.66 -21.21 16 19 C -0.02 -0.51 7.17 82.63 0.59 0.09 16 20 S 0.21 6.71 20.45 -56.49 -1.16 5.56 16 21 C -0.03 -0.68 12.21 130.66 1.60 0.92 16 22 N -0.46 -12.99 9.83 -191.00 -1.88 -14.86 16 23 C 0.04 1.26 6.40 41.71 0.27 1.53 16 24 C -0.11 -2.44 5.82 -11.54 -0.07 -2.51 16 25 C -0.15 -2.72 10.09 30.60 0.31 -2.41 16 26 C -0.16 -3.03 10.23 30.59 0.31 -2.72 16 27 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 29 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.09 3.00 7.76 -2.39 -0.02 2.98 16 31 H 0.09 3.05 7.24 -2.39 -0.02 3.04 16 32 H 0.02 1.08 8.02 -2.38 -0.02 1.07 16 33 H 0.06 2.94 5.41 -2.39 -0.01 2.92 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.43 12.08 7.19 -92.71 -0.67 11.42 16 36 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.13 2.47 7.40 -2.39 -0.02 2.45 16 38 H 0.09 1.99 7.73 -2.39 -0.02 1.97 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.81 367.47 3.06 -61.75 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.41 Total: 23.47 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 7.16 Total: 19.38 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -5.30 Total: -112.84 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.09 Total: -42.79 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.71 SS G_CDS: -1.16 Total: 5.56 kcal Total: -64.81 3.06 -61.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.457 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds