Wall clock time and date at job start Tue Mar 31 2020 18:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75341 * 124.37399 * 2 1 4 4 C 1.75877 * 92.15698 * 180.26590 * 3 2 1 5 5 N 1.35028 * 130.82427 * 180.02562 * 4 3 2 6 6 C 1.29983 * 121.70427 * 180.02562 * 5 4 3 7 7 N 1.35786 * 121.86926 * 359.97438 * 6 5 4 8 8 C 1.46507 * 119.81586 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47078 * 89.99489 * 8 7 6 10 10 O 1.21286 * 120.00351 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00373 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47471 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99711 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00308 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99572 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47152 * 89.99758 * 18 16 14 20 20 H 1.48504 * 109.46800 * 210.00283 * 18 16 14 21 21 H 1.48505 * 109.46956 * 330.00020 * 18 16 14 22 22 C 1.34748 * 120.36989 * 0.02562 * 7 6 5 23 23 O 1.21894 * 120.64443 * 180.02562 * 22 7 6 24 24 C 1.39189 * 109.62166 * 0.02562 * 4 3 2 25 25 C 1.32034 * 124.37099 * 180.30237 * 2 1 3 26 26 C 1.50699 * 122.59945 * 359.75317 * 25 2 1 27 27 H 1.08998 * 109.47060 * 269.69762 * 1 2 3 28 28 H 1.09000 * 109.46767 * 29.70359 * 1 2 3 29 29 H 1.09002 * 109.47165 * 149.69659 * 1 2 3 30 30 H 1.08000 * 119.06175 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47102 * 210.00105 * 8 7 6 32 32 H 1.09003 * 109.46481 * 329.99960 * 8 7 6 33 33 H 0.97005 * 119.99554 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47119 * 300.00997 * 12 11 9 35 35 H 1.09004 * 109.46802 * 60.00483 * 12 11 9 36 36 H 1.08997 * 109.47074 * 300.00525 * 13 12 11 37 37 H 1.09004 * 109.46977 * 60.00270 * 13 12 11 38 38 H 0.96997 * 119.99467 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47185 * 89.97663 * 26 25 2 40 40 H 1.08997 * 109.47285 * 209.97608 * 26 25 2 41 41 H 1.09009 * 109.46991 * 329.97935 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4472 0.0000 4 6 3.9850 0.5096 -0.0082 5 7 5.2765 0.9034 -0.0116 6 6 6.2525 0.0449 -0.0182 7 7 6.0291 -1.2944 -0.0214 8 6 7.1631 -2.2221 -0.0283 9 6 7.5570 -2.5443 1.3901 10 8 6.9501 -2.0484 2.3157 11 7 8.5833 -3.3844 1.6302 12 6 8.9659 -3.6982 3.0091 13 6 10.1502 -4.6668 3.0019 14 6 10.5435 -4.9900 4.4203 15 1 10.0025 -4.5490 5.2445 16 6 11.5939 -5.8487 4.6659 17 7 12.2529 -6.3853 3.6622 18 14 12.0808 -6.2499 6.4241 19 1 11.3240 -7.4403 6.8880 20 1 13.5370 -6.5356 6.4815 21 1 11.7686 -5.0924 7.3006 22 6 4.7703 -1.7752 -0.0184 23 8 4.5640 -2.9765 -0.0208 24 6 3.6814 -0.8488 -0.0111 25 6 2.2524 -1.0898 -0.0058 26 6 1.6629 -2.4767 -0.0076 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3633 0.8926 -0.5092 29 1 -0.3633 -0.8873 -0.5185 30 1 7.2699 0.4072 -0.0203 31 1 6.8790 -3.1394 -0.5439 32 1 8.0059 -1.7616 -0.5438 33 1 9.0684 -3.7813 0.8899 34 1 9.2502 -2.7809 3.5249 35 1 8.1228 -4.1584 3.5243 36 1 9.8663 -5.5839 2.4860 37 1 10.9932 -4.2061 2.4868 38 1 12.9917 -6.9897 3.8350 39 1 1.5167 -2.8080 -1.0357 40 1 2.3418 -3.1608 0.5015 41 1 0.7036 -2.4644 0.5100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342624557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:00 Heat of formation + Delta-G solvation = -25.998058 kcal Electronic energy + Delta-G solvation = -25503.644847 eV Core-core repulsion = 21702.983529 eV Total energy + Delta-G solvation = -3800.661318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99214 -39.38848 -37.80211 -37.70964 -35.14981 -34.64390 -32.95118 -31.52662 -30.31592 -29.52470 -28.51916 -26.58867 -25.12991 -24.18306 -23.44646 -21.20861 -20.59365 -19.75283 -18.82116 -18.01523 -17.54880 -17.27239 -16.54465 -16.32931 -15.75931 -15.32341 -14.93898 -14.77016 -14.55534 -14.40055 -14.32975 -13.74896 -13.54830 -13.38453 -13.36561 -13.03552 -12.99352 -12.63677 -12.35422 -12.33578 -12.12532 -11.85399 -11.28507 -11.15292 -11.08379 -10.69878 -10.42503 -10.40880 -10.34343 -10.20880 -9.87105 -9.54386 -9.28100 -8.72959 -8.69458 -8.44798 -8.16382 -6.14546 -4.17585 0.01467 0.87208 1.44692 1.58596 1.84599 2.07243 2.67489 3.19947 3.26586 3.32897 3.36796 3.56202 3.82463 4.08846 4.37325 4.40551 4.55905 4.59135 4.75348 4.81873 4.91131 5.02965 5.12188 5.19149 5.22775 5.36877 5.48506 5.56611 5.70329 5.88100 5.89349 6.18434 6.20886 6.24211 6.35484 6.61930 6.71872 7.35108 7.42677 7.53372 7.59065 7.76841 7.83589 8.19356 8.38701 8.88032 9.47630 10.96950 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002122 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.781258 B =13191.097618 C =13471.064033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.210 4.210 3 S 0.186 5.814 4 C 0.081 3.919 5 N -0.508 5.508 6 C 0.399 3.601 7 N -0.515 5.515 8 C 0.071 3.929 9 C 0.492 3.508 10 O -0.538 6.538 11 N -0.713 5.713 12 C 0.122 3.878 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.564 3.436 23 O -0.515 6.515 24 C -0.225 4.225 25 C -0.034 4.034 26 C -0.100 4.100 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.212 0.788 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.508 14.813 -14.321 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.326 4.326 3 S 0.451 5.549 4 C -0.151 4.151 5 N -0.229 5.229 6 C 0.109 3.891 7 N -0.235 5.235 8 C -0.055 4.055 9 C 0.275 3.725 10 O -0.415 6.415 11 N -0.364 5.364 12 C 0.000 4.000 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.359 3.641 23 O -0.391 6.391 24 C -0.243 4.243 25 C -0.045 4.045 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.228 0.772 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.359 16.676 -13.663 28.975 hybrid contribution 1.074 -2.679 0.672 2.963 sum -18.285 13.997 -12.991 26.439 Atomic orbital electron populations 1.20325 0.86971 1.03295 1.03003 1.23753 1.00359 0.95177 1.13309 1.83934 0.90738 1.06072 1.74141 1.23861 0.96746 0.94450 1.00085 1.67903 0.97096 1.33922 1.23998 1.24942 0.99978 0.78120 0.86018 1.46170 1.08532 1.07995 1.60787 1.21909 0.89029 0.96964 0.97609 1.20532 0.81140 0.80356 0.90507 1.90750 1.52993 1.52487 1.45306 1.46253 1.32780 1.46018 1.11319 1.21792 0.99252 0.99809 0.79132 1.19329 0.91258 0.93544 0.98322 1.21028 1.15683 1.27662 0.91794 0.92265 1.24995 0.96111 0.95719 0.97445 1.69948 1.21542 1.31026 1.30693 0.86502 0.77632 0.78866 0.84509 1.20520 1.21120 1.19728 1.16576 0.81486 0.88682 0.77393 1.90898 1.83413 1.14938 1.49821 1.20560 0.94683 0.92410 1.16635 1.19125 0.89283 0.96831 0.99250 1.20635 1.00772 0.91745 1.02735 0.90555 0.91146 0.90170 0.77225 0.85062 0.85379 0.76564 0.92327 0.92420 0.95838 0.95815 0.92790 0.90881 0.89749 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 9.66 36.01 0.35 -0.15 16 2 C -0.21 -2.10 6.39 -36.23 -0.23 -2.33 16 3 S 0.19 1.88 23.20 -107.50 -2.49 -0.61 16 4 C 0.08 1.05 7.70 -15.79 -0.12 0.93 16 5 N -0.51 -6.18 10.42 -12.60 -0.13 -6.31 16 6 C 0.40 4.06 11.48 -90.12 -1.03 3.03 16 7 N -0.52 -6.27 2.08 -121.72 -0.25 -6.52 16 8 C 0.07 0.72 5.84 -5.19 -0.03 0.69 16 9 C 0.49 7.51 7.90 -10.99 -0.09 7.42 16 10 O -0.54 -10.72 16.43 5.55 0.09 -10.63 16 11 N -0.71 -11.18 5.56 -60.30 -0.33 -11.52 16 12 C 0.12 2.48 5.61 -4.05 -0.02 2.46 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 14 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.56 8.57 7.50 -14.44 -0.11 8.46 16 23 O -0.51 -8.98 14.78 5.02 0.07 -8.90 16 24 C -0.23 -3.20 6.06 -105.07 -0.64 -3.83 16 25 C -0.03 -0.42 5.96 -103.90 -0.62 -1.04 16 26 C -0.10 -1.09 9.16 36.01 0.33 -0.76 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.44 7.22 -51.93 -0.37 0.07 16 30 H 0.21 1.12 8.02 -52.49 -0.42 0.70 16 31 H 0.13 1.28 7.43 -51.93 -0.39 0.89 16 32 H 0.13 0.63 8.01 -51.93 -0.42 0.22 16 33 H 0.40 5.08 8.47 -40.82 -0.35 4.74 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 41 H 0.07 0.58 7.17 -51.92 -0.37 0.21 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -36.48 365.52 -9.75 -46.23 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.16 Total: -0.52 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.77 Total: 2.02 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.02 Total: -49.24 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.17 Total: -19.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.48 -9.75 -46.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342624557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.231 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds