Wall clock time and date at job start Tue Mar 31 2020 18:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.75341 * 124.37399 * 2 1 4 4 C 1.75877 * 92.15698 * 180.26590 * 3 2 1 5 5 N 1.35028 * 130.82427 * 180.02562 * 4 3 2 6 6 C 1.29983 * 121.70427 * 180.02562 * 5 4 3 7 7 N 1.35786 * 121.86926 * 359.97438 * 6 5 4 8 8 C 1.46507 * 119.81586 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47078 * 89.99489 * 8 7 6 10 10 O 1.21286 * 120.00351 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00035 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00373 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47471 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99711 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00308 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99572 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47152 * 89.99758 * 18 16 14 20 20 H 1.48504 * 109.46800 * 210.00283 * 18 16 14 21 21 H 1.48505 * 109.46956 * 330.00020 * 18 16 14 22 22 C 1.34748 * 120.36989 * 0.02562 * 7 6 5 23 23 O 1.21894 * 120.64443 * 180.02562 * 22 7 6 24 24 C 1.39189 * 109.62166 * 0.02562 * 4 3 2 25 25 C 1.32034 * 124.37099 * 180.30237 * 2 1 3 26 26 C 1.50699 * 122.59945 * 359.75317 * 25 2 1 27 27 H 1.08998 * 109.47060 * 269.69762 * 1 2 3 28 28 H 1.09000 * 109.46767 * 29.70359 * 1 2 3 29 29 H 1.09002 * 109.47165 * 149.69659 * 1 2 3 30 30 H 1.08000 * 119.06175 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47102 * 210.00105 * 8 7 6 32 32 H 1.09003 * 109.46481 * 329.99960 * 8 7 6 33 33 H 0.97005 * 119.99554 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47119 * 300.00997 * 12 11 9 35 35 H 1.09004 * 109.46802 * 60.00483 * 12 11 9 36 36 H 1.08997 * 109.47074 * 300.00525 * 13 12 11 37 37 H 1.09004 * 109.46977 * 60.00270 * 13 12 11 38 38 H 0.96997 * 119.99467 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47185 * 89.97663 * 26 25 2 40 40 H 1.08997 * 109.47285 * 209.97608 * 26 25 2 41 41 H 1.09009 * 109.46991 * 329.97935 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4472 0.0000 4 6 3.9850 0.5096 -0.0082 5 7 5.2765 0.9034 -0.0116 6 6 6.2525 0.0449 -0.0182 7 7 6.0291 -1.2944 -0.0214 8 6 7.1631 -2.2221 -0.0283 9 6 7.5570 -2.5443 1.3901 10 8 6.9501 -2.0484 2.3157 11 7 8.5833 -3.3844 1.6302 12 6 8.9659 -3.6982 3.0091 13 6 10.1502 -4.6668 3.0019 14 6 10.5435 -4.9900 4.4203 15 1 10.0025 -4.5490 5.2445 16 6 11.5939 -5.8487 4.6659 17 7 12.2529 -6.3853 3.6622 18 14 12.0808 -6.2499 6.4241 19 1 11.3240 -7.4403 6.8880 20 1 13.5370 -6.5356 6.4815 21 1 11.7686 -5.0924 7.3006 22 6 4.7703 -1.7752 -0.0184 23 8 4.5640 -2.9765 -0.0208 24 6 3.6814 -0.8488 -0.0111 25 6 2.2524 -1.0898 -0.0058 26 6 1.6629 -2.4767 -0.0076 27 1 -0.3633 -0.0054 1.0276 28 1 -0.3633 0.8926 -0.5092 29 1 -0.3633 -0.8873 -0.5185 30 1 7.2699 0.4072 -0.0203 31 1 6.8790 -3.1394 -0.5439 32 1 8.0059 -1.7616 -0.5438 33 1 9.0684 -3.7813 0.8899 34 1 9.2502 -2.7809 3.5249 35 1 8.1228 -4.1584 3.5243 36 1 9.8663 -5.5839 2.4860 37 1 10.9932 -4.2061 2.4868 38 1 12.9917 -6.9897 3.8350 39 1 1.5167 -2.8080 -1.0357 40 1 2.3418 -3.1608 0.5015 41 1 0.7036 -2.4644 0.5100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342624557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:00 Heat of formation + Delta-G solvation = -50.212797 kcal Electronic energy + Delta-G solvation = -25504.694877 eV Core-core repulsion = 21702.983529 eV Total energy + Delta-G solvation = -3801.711348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94248 -40.65883 -38.83731 -38.59333 -36.69428 -35.64988 -34.86976 -32.33075 -31.95095 -30.29893 -29.74376 -27.41132 -26.74403 -25.34404 -24.35752 -22.98243 -21.87395 -20.60893 -19.69823 -19.00263 -18.83041 -18.38666 -18.14512 -17.33951 -16.91021 -16.66115 -16.48811 -16.15061 -15.76190 -15.24454 -15.24000 -15.08732 -14.67011 -14.50476 -14.34031 -14.30890 -13.85092 -13.67444 -13.40043 -13.29366 -13.24725 -12.94866 -12.88115 -12.75312 -12.55859 -12.26300 -11.93530 -11.73007 -11.52815 -11.39642 -11.31610 -11.14183 -10.71252 -10.61890 -10.11005 -9.60364 -9.02206 -8.25733 -6.35610 -0.85325 0.05085 0.46581 0.75916 1.00191 1.16913 1.40484 1.41029 1.46729 1.52072 2.10376 2.38131 2.50157 3.06425 3.09235 3.28677 3.56780 3.66577 3.78975 3.85050 4.03056 4.19608 4.27022 4.34551 4.45745 4.46488 4.65652 4.69927 4.75378 4.81974 4.83028 5.04694 5.06690 5.12390 5.21764 5.32887 5.45656 5.48682 5.57569 5.77025 6.14783 6.44612 6.49853 6.59146 6.77280 7.14800 7.33563 8.85755 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002122 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.781258 B =13191.097618 C =13471.064033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.198 4.198 3 S 0.222 5.778 4 C 0.062 3.938 5 N -0.522 5.522 6 C 0.400 3.600 7 N -0.517 5.517 8 C 0.081 3.919 9 C 0.492 3.508 10 O -0.588 6.588 11 N -0.706 5.706 12 C 0.142 3.858 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.055 0.945 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.962 3.038 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.267 1.267 22 C 0.550 3.450 23 O -0.554 6.554 24 C -0.259 4.259 25 C -0.067 4.067 26 C -0.093 4.093 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.194 0.806 33 H 0.417 0.583 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.008 0.992 37 H 0.017 0.983 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.844 16.370 -14.978 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.314 4.314 3 S 0.487 5.513 4 C -0.171 4.171 5 N -0.243 5.243 6 C 0.112 3.888 7 N -0.236 5.236 8 C -0.044 4.044 9 C 0.278 3.722 10 O -0.468 6.468 11 N -0.358 5.358 12 C 0.018 3.982 13 C -0.014 4.014 14 C -0.587 4.587 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.787 3.213 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.192 1.192 22 C 0.346 3.654 23 O -0.433 6.433 24 C -0.277 4.277 25 C -0.077 4.077 26 C -0.151 4.151 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.277 0.723 31 H 0.156 0.844 32 H 0.211 0.789 33 H 0.254 0.746 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.677 18.254 -14.360 30.440 hybrid contribution 1.131 -3.085 0.861 3.397 sum -18.545 15.169 -13.499 27.500 Atomic orbital electron populations 1.20517 0.84316 1.04841 1.04181 1.24238 1.02026 0.94493 1.10677 1.83747 0.89108 1.05388 1.73015 1.24276 0.98017 0.94758 1.00033 1.67960 0.97127 1.34547 1.24712 1.25988 1.01590 0.77083 0.84097 1.46244 1.08038 1.09076 1.60220 1.22123 0.90390 0.97991 0.93924 1.21377 0.79680 0.78810 0.92317 1.90734 1.54348 1.54208 1.47528 1.45991 1.33449 1.46417 1.09915 1.21212 0.96985 0.98307 0.81673 1.19132 0.92183 0.93524 0.96589 1.21456 1.15970 1.27926 0.93303 0.92641 1.25828 0.96101 0.95558 1.01566 1.70040 1.22026 1.31567 1.32661 0.85492 0.77512 0.78716 0.79617 1.20027 1.20333 1.19174 1.16945 0.82851 0.88481 0.77122 1.90859 1.84255 1.16289 1.51905 1.20828 0.95550 0.92998 1.18288 1.19335 0.89025 0.97945 1.01437 1.20561 1.00883 0.90689 1.03006 0.89391 0.89251 0.88997 0.72322 0.84388 0.78930 0.74578 0.93038 0.94537 0.97378 0.96461 0.92507 0.90263 0.93022 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.66 71.24 0.69 -0.15 16 2 C -0.20 -3.71 6.39 24.76 0.16 -3.56 16 3 S 0.22 4.20 23.20 -56.49 -1.31 2.89 16 4 C 0.06 1.57 7.70 84.43 0.65 2.22 16 5 N -0.52 -12.04 10.42 -193.77 -2.02 -14.06 16 6 C 0.40 7.32 11.48 180.17 2.07 9.39 16 7 N -0.52 -11.98 2.08 -657.15 -1.37 -13.35 16 8 C 0.08 1.45 5.84 85.63 0.50 1.95 16 9 C 0.49 14.60 7.90 87.65 0.69 15.29 16 10 O -0.59 -23.59 16.43 -3.05 -0.05 -23.64 16 11 N -0.71 -21.66 5.56 -463.06 -2.57 -24.23 16 12 C 0.14 5.87 5.61 86.38 0.48 6.35 16 13 C 0.02 1.13 5.09 29.85 0.15 1.28 16 14 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 15 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 16 C 0.01 0.47 5.46 84.65 0.46 0.93 16 17 N -0.92 -53.16 13.29 21.45 0.28 -52.88 16 18 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.55 17.06 7.50 85.43 0.64 17.70 16 23 O -0.55 -20.22 14.78 -4.97 -0.07 -20.29 16 24 C -0.26 -7.49 6.06 -20.16 -0.12 -7.61 16 25 C -0.07 -1.66 5.96 -19.08 -0.11 -1.77 16 26 C -0.09 -2.07 9.16 71.24 0.65 -1.42 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.79 7.22 -2.39 -0.02 0.77 16 30 H 0.26 1.70 8.02 -2.91 -0.02 1.67 16 31 H 0.14 2.45 7.43 -2.39 -0.02 2.43 16 32 H 0.19 0.95 8.01 -2.39 -0.02 0.93 16 33 H 0.42 10.00 8.47 -92.70 -0.79 9.22 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.49 6.62 -2.39 -0.02 1.48 16 41 H 0.09 1.50 7.17 -2.38 -0.02 1.49 16 Total: -1.00 -83.18 365.52 2.36 -80.82 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.30 Total: 8.75 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.15 Total: 10.64 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.67 Total: -104.52 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.12 Total: -43.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.31 Total: 2.89 kcal Total: -83.18 2.36 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342624557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.603 kcal (2) G-P(sol) polarization free energy of solvation -83.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds