Wall clock time and date at job start Tue Mar 31 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75344 * 124.37493 * 2 1 4 4 C 1.75875 * 92.15687 * 179.97438 * 3 2 1 5 5 N 1.35024 * 130.81882 * 179.97438 * 4 3 2 6 6 C 1.29979 * 121.70563 * 179.71808 * 5 4 3 7 7 N 1.35794 * 121.86401 * 0.57540 * 6 5 4 8 8 C 1.46499 * 119.81323 * 179.72400 * 7 6 5 9 9 C 1.53002 * 109.47341 * 269.72744 * 8 7 6 10 10 C 1.50695 * 109.47004 * 180.02562 * 9 8 7 11 11 O 1.21274 * 120.00413 * 0.27039 * 10 9 8 12 12 N 1.34784 * 119.99635 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47276 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46843 * 60.00309 * 18 16 14 20 20 H 1.48498 * 109.47022 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47284 * 300.00154 * 18 16 14 22 22 C 1.34746 * 120.37201 * 359.44999 * 7 6 5 23 23 O 1.21887 * 120.64727 * 180.27626 * 22 7 6 24 24 C 1.39192 * 109.62281 * 359.97438 * 4 3 2 25 25 C 1.32032 * 124.36853 * 179.97438 * 2 1 3 26 26 C 1.50700 * 122.60413 * 0.03495 * 25 2 1 27 27 H 1.09001 * 109.46826 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47341 * 120.02138 * 1 2 3 29 29 H 1.09007 * 109.47030 * 240.02330 * 1 2 3 30 30 H 1.08000 * 119.06849 * 180.27957 * 6 5 4 31 31 H 1.08997 * 109.47290 * 149.72358 * 8 7 6 32 32 H 1.09002 * 109.47352 * 29.72609 * 8 7 6 33 33 H 1.09005 * 109.47089 * 59.99869 * 9 8 7 34 34 H 1.09002 * 109.46787 * 300.00211 * 9 8 7 35 35 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47024 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.47136 * 59.99926 * 13 12 10 38 38 H 0.96998 * 120.00132 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46901 * 269.98463 * 26 25 2 40 40 H 1.09002 * 109.46958 * 29.98090 * 26 25 2 41 41 H 1.08992 * 109.47164 * 149.97940 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4472 0.0000 4 6 3.9850 0.5096 0.0008 5 7 5.2765 0.9035 0.0007 6 6 6.2525 0.0451 0.0068 7 7 6.0292 -1.2943 0.0020 8 6 7.1632 -2.2218 0.0032 9 6 7.5586 -2.5457 -1.4389 10 6 8.7247 -3.5002 -1.4377 11 8 9.1903 -3.8876 -0.3870 12 7 9.2465 -3.9282 -2.6044 13 6 10.3805 -4.8557 -2.6033 14 6 10.7699 -5.1748 -4.0237 15 1 10.2267 -4.7314 -4.8451 16 6 11.8189 -6.0336 -4.2745 17 7 12.4794 -6.5748 -3.2743 18 14 12.3011 -6.4297 -6.0352 19 1 12.6863 -5.1786 -6.7363 20 1 13.4499 -7.3708 -6.0340 21 1 11.1502 -7.0552 -6.7349 22 6 4.7704 -1.7752 0.0018 23 8 4.5642 -2.9765 0.0026 24 6 3.6815 -0.8489 0.0016 25 6 2.2524 -1.0898 0.0005 26 6 1.6629 -2.4767 0.0003 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5142 -0.8898 29 1 -0.3633 -0.5135 0.8903 30 1 7.2699 0.4074 0.0111 31 1 6.8808 -3.1403 0.5175 32 1 8.0077 -1.7626 0.5170 33 1 7.8411 -1.6271 -1.9533 34 1 6.7141 -3.0049 -1.9528 35 1 8.8717 -3.6215 -3.4448 36 1 11.2251 -4.3963 -2.0898 37 1 10.0982 -5.7741 -2.0885 38 1 13.2172 -7.1793 -3.4508 39 1 1.5205 -2.8111 1.0280 40 1 0.7018 -2.4629 -0.5137 41 1 2.3399 -3.1592 -0.5134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344462995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:29 Heat of formation + Delta-G solvation = -30.961391 kcal Electronic energy + Delta-G solvation = -25297.697763 eV Core-core repulsion = 21496.821219 eV Total energy + Delta-G solvation = -3800.876544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98188 -39.06004 -37.94433 -37.80093 -35.21824 -34.26944 -32.42981 -31.62767 -31.24089 -29.59255 -27.58318 -26.67684 -25.69754 -23.82900 -23.32720 -22.15877 -19.86382 -19.75323 -18.85420 -18.06348 -17.57350 -17.02557 -16.35487 -16.28384 -15.34522 -15.33665 -15.20080 -14.84963 -14.62976 -14.43923 -14.19674 -13.78714 -13.44473 -13.36798 -13.13214 -13.06206 -12.86087 -12.67521 -12.64007 -12.23674 -11.99701 -11.88058 -11.63691 -11.30087 -11.19375 -11.03798 -10.90035 -10.39001 -10.36408 -10.25054 -10.08398 -9.46791 -9.22214 -8.80432 -8.78712 -8.22513 -7.98473 -6.20715 -4.28143 -0.05118 0.81283 1.37825 1.51699 1.77554 2.14276 3.20101 3.22866 3.22994 3.27887 3.29187 3.77644 3.94665 4.06563 4.31391 4.42670 4.58537 4.59737 4.71472 4.80368 4.92031 5.05625 5.13522 5.15405 5.22430 5.31791 5.43390 5.46330 5.51064 5.62201 5.65110 5.72868 5.85108 5.98766 6.17522 6.32432 7.22416 7.30552 7.31824 7.45047 7.56599 7.59434 7.91653 8.51194 8.69807 8.96984 9.38374 10.89329 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.002056 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.709721 B =13613.317349 C =13871.437586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.209 4.209 3 S 0.185 5.815 4 C 0.078 3.922 5 N -0.510 5.510 6 C 0.390 3.610 7 N -0.531 5.531 8 C 0.110 3.890 9 C -0.158 4.158 10 C 0.505 3.495 11 O -0.556 6.556 12 N -0.709 5.709 13 C 0.249 3.751 14 C -0.546 4.546 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.554 3.446 23 O -0.512 6.512 24 C -0.228 4.228 25 C -0.036 4.036 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.214 0.786 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.392 0.608 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.267 0.733 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.132 17.767 6.604 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.325 4.325 3 S 0.451 5.549 4 C -0.154 4.154 5 N -0.232 5.232 6 C 0.100 3.900 7 N -0.251 5.251 8 C -0.012 4.012 9 C -0.199 4.199 10 C 0.289 3.711 11 O -0.436 6.436 12 N -0.357 5.357 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.349 3.651 23 O -0.387 6.387 24 C -0.246 4.246 25 C -0.047 4.047 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.224 0.776 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.170 18.951 7.385 30.086 hybrid contribution 0.553 -2.236 -1.429 2.711 sum -21.617 16.715 5.956 27.967 Atomic orbital electron populations 1.20300 0.86982 1.02882 1.03233 1.23771 1.00356 0.95168 1.13215 1.83991 0.90781 1.06105 1.74055 1.23880 0.96788 0.94436 1.00293 1.67931 0.97062 1.34209 1.24029 1.25069 0.99999 0.78461 0.86450 1.46797 1.09508 1.08438 1.60367 1.21814 0.86437 0.95053 0.97905 1.21980 0.99278 1.01045 0.97610 1.20051 0.83990 0.82174 0.84924 1.90685 1.62785 1.58883 1.31259 1.46475 1.35125 1.47192 1.06861 1.19140 0.82694 0.87790 0.97506 1.21176 1.16767 1.29004 0.91467 0.91937 1.24953 0.95813 0.95391 0.97843 1.69956 1.21104 1.30138 1.30998 0.86461 0.78151 0.78332 0.83891 1.20044 1.21034 1.20049 1.16667 0.81682 0.88726 0.78037 1.90926 1.83491 1.14869 1.49458 1.20634 0.94778 0.92508 1.16696 1.19130 0.89330 0.96839 0.99366 1.20624 1.00691 0.91672 1.02860 0.91319 0.90315 0.90372 0.77008 0.86927 0.87356 0.88750 0.88559 0.77565 0.95378 0.95396 0.92329 0.90831 0.91398 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 9.35 36.01 0.34 -0.09 16 2 C -0.21 -1.87 6.39 -36.23 -0.23 -2.10 16 3 S 0.19 1.67 23.20 -107.50 -2.49 -0.82 16 4 C 0.08 0.90 7.70 -15.79 -0.12 0.78 16 5 N -0.51 -5.43 10.42 -12.60 -0.13 -5.56 16 6 C 0.39 3.37 11.48 -90.12 -1.03 2.33 16 7 N -0.53 -5.83 2.59 -120.43 -0.31 -6.14 16 8 C 0.11 1.27 4.65 -4.04 -0.02 1.25 16 9 C -0.16 -1.98 6.02 -27.88 -0.17 -2.15 16 10 C 0.50 9.22 7.83 -10.98 -0.09 9.14 16 11 O -0.56 -12.29 15.98 5.56 0.09 -12.20 16 12 N -0.71 -14.21 5.55 -61.47 -0.34 -14.55 16 13 C 0.25 6.43 5.43 -5.20 -0.03 6.41 16 14 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.55 7.63 7.51 -14.44 -0.11 7.52 16 23 O -0.51 -8.43 14.78 5.02 0.07 -8.35 16 24 C -0.23 -2.90 6.06 -105.07 -0.64 -3.53 16 25 C -0.04 -0.40 5.96 -103.90 -0.62 -1.02 16 26 C -0.10 -0.99 9.46 36.01 0.34 -0.65 16 27 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 28 H 0.08 0.38 7.85 -51.93 -0.41 -0.02 16 29 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.21 0.86 8.02 -52.49 -0.42 0.44 16 31 H 0.11 1.59 7.39 -51.93 -0.38 1.21 16 32 H 0.11 1.03 7.97 -51.93 -0.41 0.62 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.39 6.72 8.32 -40.82 -0.34 6.39 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.51 7.22 -51.93 -0.37 0.13 16 41 H 0.08 1.01 6.62 -51.93 -0.34 0.67 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -34.82 365.50 -9.86 -44.68 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.18 Total: 2.16 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.79 Total: 4.67 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.05 Total: -51.26 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.55 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.82 -9.86 -44.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344462995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.723 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds