Wall clock time and date at job start Tue Mar 31 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75344 * 124.37493 * 2 1 4 4 C 1.75875 * 92.15687 * 179.97438 * 3 2 1 5 5 N 1.35024 * 130.81882 * 179.97438 * 4 3 2 6 6 C 1.29979 * 121.70563 * 179.71808 * 5 4 3 7 7 N 1.35794 * 121.86401 * 0.57540 * 6 5 4 8 8 C 1.46499 * 119.81323 * 179.72400 * 7 6 5 9 9 C 1.53002 * 109.47341 * 269.72744 * 8 7 6 10 10 C 1.50695 * 109.47004 * 180.02562 * 9 8 7 11 11 O 1.21274 * 120.00413 * 0.27039 * 10 9 8 12 12 N 1.34784 * 119.99635 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47276 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46843 * 60.00309 * 18 16 14 20 20 H 1.48498 * 109.47022 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47284 * 300.00154 * 18 16 14 22 22 C 1.34746 * 120.37201 * 359.44999 * 7 6 5 23 23 O 1.21887 * 120.64727 * 180.27626 * 22 7 6 24 24 C 1.39192 * 109.62281 * 359.97438 * 4 3 2 25 25 C 1.32032 * 124.36853 * 179.97438 * 2 1 3 26 26 C 1.50700 * 122.60413 * 0.03495 * 25 2 1 27 27 H 1.09001 * 109.46826 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47341 * 120.02138 * 1 2 3 29 29 H 1.09007 * 109.47030 * 240.02330 * 1 2 3 30 30 H 1.08000 * 119.06849 * 180.27957 * 6 5 4 31 31 H 1.08997 * 109.47290 * 149.72358 * 8 7 6 32 32 H 1.09002 * 109.47352 * 29.72609 * 8 7 6 33 33 H 1.09005 * 109.47089 * 59.99869 * 9 8 7 34 34 H 1.09002 * 109.46787 * 300.00211 * 9 8 7 35 35 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47024 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.47136 * 59.99926 * 13 12 10 38 38 H 0.96998 * 120.00132 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46901 * 269.98463 * 26 25 2 40 40 H 1.09002 * 109.46958 * 29.98090 * 26 25 2 41 41 H 1.08992 * 109.47164 * 149.97940 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4970 1.4472 0.0000 4 6 3.9850 0.5096 0.0008 5 7 5.2765 0.9035 0.0007 6 6 6.2525 0.0451 0.0068 7 7 6.0292 -1.2943 0.0020 8 6 7.1632 -2.2218 0.0032 9 6 7.5586 -2.5457 -1.4389 10 6 8.7247 -3.5002 -1.4377 11 8 9.1903 -3.8876 -0.3870 12 7 9.2465 -3.9282 -2.6044 13 6 10.3805 -4.8557 -2.6033 14 6 10.7699 -5.1748 -4.0237 15 1 10.2267 -4.7314 -4.8451 16 6 11.8189 -6.0336 -4.2745 17 7 12.4794 -6.5748 -3.2743 18 14 12.3011 -6.4297 -6.0352 19 1 12.6863 -5.1786 -6.7363 20 1 13.4499 -7.3708 -6.0340 21 1 11.1502 -7.0552 -6.7349 22 6 4.7704 -1.7752 0.0018 23 8 4.5642 -2.9765 0.0026 24 6 3.6815 -0.8489 0.0016 25 6 2.2524 -1.0898 0.0005 26 6 1.6629 -2.4767 0.0003 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5142 -0.8898 29 1 -0.3633 -0.5135 0.8903 30 1 7.2699 0.4074 0.0111 31 1 6.8808 -3.1403 0.5175 32 1 8.0077 -1.7626 0.5170 33 1 7.8411 -1.6271 -1.9533 34 1 6.7141 -3.0049 -1.9528 35 1 8.8717 -3.6215 -3.4448 36 1 11.2251 -4.3963 -2.0898 37 1 10.0982 -5.7741 -2.0885 38 1 13.2172 -7.1793 -3.4508 39 1 1.5205 -2.8111 1.0280 40 1 0.7018 -2.4629 -0.5137 41 1 2.3399 -3.1592 -0.5134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344462995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:29 Heat of formation + Delta-G solvation = -54.077743 kcal Electronic energy + Delta-G solvation = -25298.700164 eV Core-core repulsion = 21496.821219 eV Total energy + Delta-G solvation = -3801.878944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.86334 -40.59302 -38.85192 -38.67720 -36.32431 -35.94178 -34.37728 -32.48371 -32.25612 -30.28783 -29.40838 -27.48297 -26.77494 -25.02119 -24.35725 -23.66128 -21.39506 -20.57641 -19.65291 -19.15063 -18.86220 -18.11180 -17.59476 -17.34526 -16.96412 -16.68963 -16.60835 -16.02818 -15.74950 -15.24978 -15.18284 -14.86060 -14.54427 -14.42327 -14.34452 -14.02497 -13.84762 -13.74047 -13.70035 -13.57338 -13.24491 -12.95613 -12.92206 -12.69570 -12.43555 -12.33921 -12.24681 -11.90608 -11.52096 -11.34367 -11.13923 -10.99110 -10.80213 -10.76967 -9.85558 -9.59153 -8.99932 -8.29798 -6.46209 -0.82569 0.07790 0.48049 0.77628 1.02473 1.23654 1.42877 1.46388 1.54618 1.69883 2.29007 2.36238 2.60348 3.05066 3.08727 3.30653 3.61951 3.67063 3.75626 3.80719 3.97676 4.07808 4.28944 4.35536 4.38006 4.57449 4.67587 4.68736 4.77127 4.80692 4.83550 5.06749 5.10605 5.13288 5.19073 5.24320 5.38892 5.46606 5.51604 5.65858 5.84195 6.50656 6.61812 6.64224 6.84765 7.22369 7.43520 8.81875 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.002056 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.709721 B =13613.317349 C =13871.437586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.197 4.197 3 S 0.222 5.778 4 C 0.062 3.938 5 N -0.520 5.520 6 C 0.397 3.603 7 N -0.527 5.527 8 C 0.117 3.883 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.597 6.597 12 N -0.707 5.707 13 C 0.265 3.735 14 C -0.558 4.558 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.544 3.456 23 O -0.554 6.554 24 C -0.257 4.257 25 C -0.067 4.067 26 C -0.093 4.093 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.409 0.591 36 H -0.005 1.005 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.446 20.467 4.998 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.314 4.314 3 S 0.488 5.512 4 C -0.170 4.170 5 N -0.241 5.241 6 C 0.109 3.891 7 N -0.246 5.246 8 C -0.006 4.006 9 C -0.178 4.178 10 C 0.291 3.709 11 O -0.479 6.479 12 N -0.357 5.357 13 C 0.143 3.857 14 C -0.596 4.596 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.340 3.660 23 O -0.433 6.433 24 C -0.274 4.274 25 C -0.077 4.077 26 C -0.152 4.152 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.278 0.722 31 H 0.099 0.901 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.013 0.987 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.521 21.720 5.766 32.530 hybrid contribution 0.890 -2.984 -0.840 3.225 sum -22.631 18.736 4.926 29.790 Atomic orbital electron populations 1.20482 0.84522 1.04372 1.04306 1.24222 1.01935 0.94571 1.10664 1.83840 0.89187 1.05316 1.72883 1.24260 0.98011 0.94626 1.00114 1.68016 0.97010 1.34530 1.24592 1.26070 1.01589 0.77002 0.84468 1.46715 1.08351 1.09321 1.60173 1.21683 0.87239 0.94514 0.97128 1.21861 0.96133 1.00991 0.98863 1.20976 0.84518 0.81916 0.83463 1.90668 1.64287 1.60293 1.32666 1.46216 1.34122 1.46729 1.08595 1.18560 0.83437 0.86941 0.96796 1.21591 1.16951 1.28985 0.92042 0.89921 1.26045 0.95734 0.95089 1.02728 1.70118 1.21832 1.31023 1.33793 0.85233 0.77812 0.78485 0.77853 1.18483 1.21124 1.18969 1.17016 0.82853 0.88462 0.77679 1.90896 1.84269 1.16490 1.51687 1.20799 0.95368 0.92923 1.18354 1.19304 0.89128 0.97792 1.01503 1.20551 1.01052 0.90866 1.02737 0.89637 0.89138 0.89255 0.72184 0.90101 0.84693 0.84383 0.88571 0.75573 0.98749 0.99632 0.92241 0.90943 0.88985 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.35 71.24 0.67 -0.01 16 2 C -0.20 -3.20 6.39 24.76 0.16 -3.04 16 3 S 0.22 3.57 23.20 -56.49 -1.31 2.26 16 4 C 0.06 1.36 7.70 84.43 0.65 2.01 16 5 N -0.52 -9.93 10.42 -193.77 -2.02 -11.94 16 6 C 0.40 5.79 11.48 180.17 2.07 7.86 16 7 N -0.53 -10.97 2.59 -653.07 -1.69 -12.66 16 8 C 0.12 2.59 4.65 86.38 0.40 3.00 16 9 C -0.14 -3.23 6.02 29.85 0.18 -3.05 16 10 C 0.50 18.45 7.83 87.65 0.69 19.14 16 11 O -0.60 -27.17 15.98 -3.01 -0.05 -27.22 16 12 N -0.71 -28.48 5.55 -466.78 -2.59 -31.07 16 13 C 0.27 14.22 5.43 85.63 0.46 14.69 16 14 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 15 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 18 Si 0.98 41.95 29.54 68.60 2.03 43.97 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 20 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 C 0.54 15.23 7.51 85.43 0.64 15.87 16 23 O -0.55 -19.32 14.78 -4.95 -0.07 -19.39 16 24 C -0.26 -6.50 6.06 -20.15 -0.12 -6.62 16 25 C -0.07 -1.46 5.96 -19.08 -0.11 -1.57 16 26 C -0.09 -1.89 9.46 71.24 0.67 -1.21 16 27 H 0.08 0.47 8.13 -2.39 -0.02 0.45 16 28 H 0.09 0.62 7.85 -2.39 -0.02 0.60 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.26 0.92 8.02 -2.91 -0.02 0.89 16 31 H 0.08 2.38 7.39 -2.39 -0.02 2.36 16 32 H 0.14 2.28 7.97 -2.39 -0.02 2.26 16 33 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 13.55 8.32 -92.71 -0.77 12.78 16 36 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 37 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.30 7.22 -2.39 -0.02 1.29 16 41 H 0.05 1.44 6.62 -2.39 -0.02 1.42 16 Total: -1.00 -80.93 365.50 1.94 -78.98 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.31 Total: 14.22 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 7.05 Total: 18.08 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -6.01 Total: -110.90 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.12 Total: -46.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.31 Total: 2.26 kcal Total: -80.93 1.94 -78.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344462995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.907 kcal (2) G-P(sol) polarization free energy of solvation -80.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds