Wall clock time and date at job start Tue Mar 31 2020 18:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47148 * 2 1 4 4 C 1.52996 * 109.47730 * 239.99629 * 2 1 3 5 5 C 1.50710 * 109.46864 * 59.99579 * 4 2 1 6 6 H 1.08002 * 119.99618 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00037 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99772 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47003 * 90.00160 * 9 7 5 11 11 H 1.48500 * 109.47037 * 210.00151 * 9 7 5 12 12 H 1.48497 * 109.47298 * 329.99958 * 9 7 5 13 13 C 1.53002 * 109.47176 * 119.99287 * 2 1 3 14 14 N 1.46494 * 109.47488 * 300.00414 * 13 2 1 15 15 C 1.34773 * 120.00438 * 179.97438 * 14 13 2 16 16 O 1.21696 * 119.99803 * 5.09852 * 15 14 13 17 17 C 1.46751 * 120.00377 * 185.10045 * 15 14 13 18 18 C 1.39974 * 120.86106 * 174.17425 * 17 15 14 19 19 N 1.31615 * 119.29195 * 180.24980 * 18 17 15 20 20 C 1.33679 * 122.37488 * 359.43921 * 19 18 17 21 21 S 1.71450 * 128.66510 * 180.24581 * 20 19 18 22 22 C 1.75591 * 91.30759 * 180.30080 * 21 20 19 23 23 C 1.31041 * 109.49306 * 359.97438 * 22 21 20 24 24 N 1.35126 * 121.38731 * 0.57439 * 20 19 18 25 25 C 1.36379 * 119.27006 * 359.72254 * 24 20 19 26 26 O 1.21879 * 120.30163 * 180.02562 * 25 24 20 27 27 H 1.08996 * 109.47275 * 300.00522 * 1 2 3 28 28 H 1.08996 * 109.46973 * 60.00203 * 1 2 3 29 29 H 1.09004 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47320 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46415 * 299.99664 * 3 2 1 32 32 H 1.08995 * 109.47017 * 59.99292 * 3 2 1 33 33 H 1.08997 * 109.47520 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46755 * 300.00566 * 4 2 1 35 35 H 0.97002 * 119.99588 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47483 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46806 * 60.00265 * 13 2 1 38 38 H 0.96999 * 119.99733 * 0.02562 * 14 13 2 39 39 H 1.08005 * 120.35065 * 359.97438 * 18 17 15 40 40 H 1.08000 * 125.25928 * 180.02562 * 22 21 20 41 41 H 1.08002 * 122.30877 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9170 0.8673 -2.3806 7 6 1.8705 -0.4823 -3.7320 8 7 1.4324 0.1378 -4.8057 9 14 2.9434 -2.0019 -3.9032 10 1 2.0840 -3.2121 -3.9485 11 1 3.7354 -1.9100 -5.1560 12 1 3.8638 -2.0915 -2.7413 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4911 3.6696 16 8 2.6504 -1.4236 3.7831 17 6 1.2980 0.1318 4.8656 18 6 1.5265 -0.4063 6.1374 19 7 0.9881 0.1746 7.1886 20 6 0.2339 1.2739 7.0911 21 16 -0.5353 2.1597 8.3415 22 6 -1.1991 3.2984 7.1814 23 6 -0.8202 2.9623 5.9728 24 7 -0.0265 1.8448 5.8944 25 6 0.4960 1.2904 4.7633 26 8 0.2735 1.7901 3.6741 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7209 -1.2493 34 1 1.6767 -1.7489 -1.2491 35 1 1.6662 -0.1940 -5.6867 36 1 3.1300 -0.7215 1.2492 37 1 1.6767 -1.7488 1.2494 38 1 0.9936 0.7579 2.3564 39 1 2.1345 -1.2913 6.2544 40 1 -1.8226 4.1456 7.4261 41 1 -1.1132 3.5248 5.0986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345894852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:01 Heat of formation + Delta-G solvation = 3.705715 kcal Electronic energy + Delta-G solvation = -26333.413690 eV Core-core repulsion = 22534.040424 eV Total energy + Delta-G solvation = -3799.373266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.00219 -39.71371 -38.28538 -37.69193 -36.87959 -33.40545 -32.11543 -32.02251 -31.38251 -27.90513 -27.33564 -26.40850 -25.78390 -24.78314 -23.27473 -22.19109 -20.51602 -19.77885 -19.19494 -18.61266 -17.66854 -17.35308 -16.87737 -16.60598 -15.94697 -15.53317 -15.14028 -14.97451 -14.54620 -14.16220 -14.12221 -13.85851 -13.66981 -13.56953 -13.34308 -12.96134 -12.59568 -12.29283 -12.20671 -12.15136 -11.13954 -10.99714 -10.96165 -10.92795 -10.89645 -10.70838 -10.51221 -10.32410 -10.10215 -9.90774 -9.84809 -9.66275 -9.34606 -8.90046 -8.63723 -8.46903 -8.24849 -5.97671 -3.94123 -0.64739 -0.10060 0.60916 0.65906 1.31684 1.51847 2.52859 3.36792 3.43501 3.44514 3.49606 3.51613 3.53318 3.73872 4.30777 4.39244 4.51956 4.53766 4.81560 5.07420 5.25776 5.35550 5.48308 5.61953 5.66734 5.67327 5.81275 6.27399 6.29246 6.32867 6.49351 6.64547 6.72965 6.89184 6.91284 7.04128 7.07693 7.12578 7.16610 7.31063 7.47173 7.84507 7.99964 8.56297 8.61678 9.07251 9.65335 11.15242 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.002541 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.703863 B =11017.332725 C =11850.454931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.124 3.876 14 N -0.708 5.708 15 C 0.578 3.422 16 O -0.555 6.555 17 C -0.333 4.333 18 C 0.263 3.737 19 N -0.521 5.521 20 C 0.275 3.725 21 S 0.282 5.718 22 C -0.244 4.244 23 C 0.069 3.931 24 N -0.453 5.453 25 C 0.541 3.459 26 O -0.505 6.505 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.195 0.805 40 H 0.208 0.792 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 7.604 31.668 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.189 1.189 13 C 0.001 3.999 14 N -0.368 5.368 15 C 0.364 3.636 16 O -0.437 6.437 17 C -0.349 4.349 18 C 0.108 3.892 19 N -0.249 5.249 20 C -0.088 4.088 21 S 0.535 5.465 22 C -0.381 4.381 23 C -0.058 4.058 24 N -0.162 5.162 25 C 0.344 3.656 26 O -0.381 6.381 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.259 0.741 39 H 0.212 0.788 40 H 0.225 0.775 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.444 6.832 32.854 34.170 hybrid contribution 0.231 0.006 -2.567 2.577 sum -6.213 6.838 30.286 31.664 Atomic orbital electron populations 1.21770 0.94918 1.01054 1.00882 1.20662 0.95814 0.95931 0.93793 1.21768 1.00244 0.95713 1.00898 1.19602 0.96283 0.95475 0.92653 1.21107 1.31598 1.13244 0.88625 0.90408 1.25000 0.95766 0.96787 0.95970 1.69908 1.46157 1.40624 0.97828 0.86850 0.81353 0.83932 0.77605 1.20407 1.21562 1.18928 1.21645 0.98960 0.95894 0.83439 1.46630 1.52660 1.32589 1.04895 1.17035 0.81073 0.82923 0.82586 1.90789 1.36128 1.29912 1.86826 1.21526 1.13407 1.02094 0.97824 1.23342 0.86440 0.94333 0.85092 1.68336 1.16232 1.08145 1.32161 1.26059 0.97003 0.95543 0.90165 1.84457 1.44288 1.16837 1.00934 1.25452 1.10221 1.07850 0.94591 1.21204 0.93971 0.89089 1.01531 1.45377 1.38519 1.22627 1.09652 1.17422 0.80858 0.85095 0.82262 1.90725 1.60379 1.63067 1.23907 0.94783 0.90998 0.93573 0.93542 0.91013 0.94714 0.96325 0.96799 0.92881 0.91785 0.91930 0.74076 0.78821 0.77542 0.78099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.05 37.16 0.30 -2.27 16 2 C -0.06 -1.27 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.58 8.05 37.16 0.30 -2.28 16 4 C 0.00 -0.06 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -14.23 8.20 -34.43 -0.28 -14.51 16 6 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.12 2.39 4.57 -4.04 -0.02 2.38 16 14 N -0.71 -12.69 4.87 -61.59 -0.30 -12.99 16 15 C 0.58 10.00 7.73 -12.82 -0.10 9.90 16 16 O -0.56 -10.77 16.43 5.19 0.09 -10.68 16 17 C -0.33 -4.62 5.91 -104.65 -0.62 -5.23 16 18 C 0.26 2.93 10.85 -16.99 -0.18 2.74 16 19 N -0.52 -5.12 10.39 -13.58 -0.14 -5.26 16 20 C 0.28 2.25 8.07 -87.58 -0.71 1.54 16 21 S 0.28 1.00 23.14 -107.50 -2.49 -1.49 16 22 C -0.24 -0.54 11.13 29.00 0.32 -0.22 16 23 C 0.07 0.37 10.52 -16.84 -0.18 0.20 16 24 N -0.45 -4.16 2.82 -67.15 -0.19 -4.35 16 25 C 0.54 7.05 7.54 -14.38 -0.11 6.94 16 26 O -0.50 -7.67 14.11 5.03 0.07 -7.60 16 27 H 0.03 0.61 6.86 -51.93 -0.36 0.26 16 28 H 0.07 1.55 6.62 -51.93 -0.34 1.21 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.55 6.62 -51.93 -0.34 1.21 16 32 H 0.03 0.63 6.86 -51.93 -0.36 0.27 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.41 7.31 2.80 -40.82 -0.11 7.20 16 39 H 0.20 1.87 7.72 -52.48 -0.41 1.47 16 40 H 0.21 -0.30 8.06 -52.49 -0.42 -0.72 16 41 H 0.20 0.85 8.00 -52.49 -0.42 0.43 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -35.90 348.80 -7.84 -43.74 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.70 Total: 3.61 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.54 Total: -0.50 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.14 Total: -49.87 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.28 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.90 -7.84 -43.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345894852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.445 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds