Wall clock time and date at job start Tue Mar 31 2020 18:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47148 * 2 1 4 4 C 1.52996 * 109.47730 * 239.99629 * 2 1 3 5 5 C 1.50710 * 109.46864 * 59.99579 * 4 2 1 6 6 H 1.08002 * 119.99618 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00037 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99772 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47003 * 90.00160 * 9 7 5 11 11 H 1.48500 * 109.47037 * 210.00151 * 9 7 5 12 12 H 1.48497 * 109.47298 * 329.99958 * 9 7 5 13 13 C 1.53002 * 109.47176 * 119.99287 * 2 1 3 14 14 N 1.46494 * 109.47488 * 300.00414 * 13 2 1 15 15 C 1.34773 * 120.00438 * 179.97438 * 14 13 2 16 16 O 1.21696 * 119.99803 * 5.09852 * 15 14 13 17 17 C 1.46751 * 120.00377 * 185.10045 * 15 14 13 18 18 C 1.39974 * 120.86106 * 174.17425 * 17 15 14 19 19 N 1.31615 * 119.29195 * 180.24980 * 18 17 15 20 20 C 1.33679 * 122.37488 * 359.43921 * 19 18 17 21 21 S 1.71450 * 128.66510 * 180.24581 * 20 19 18 22 22 C 1.75591 * 91.30759 * 180.30080 * 21 20 19 23 23 C 1.31041 * 109.49306 * 359.97438 * 22 21 20 24 24 N 1.35126 * 121.38731 * 0.57439 * 20 19 18 25 25 C 1.36379 * 119.27006 * 359.72254 * 24 20 19 26 26 O 1.21879 * 120.30163 * 180.02562 * 25 24 20 27 27 H 1.08996 * 109.47275 * 300.00522 * 1 2 3 28 28 H 1.08996 * 109.46973 * 60.00203 * 1 2 3 29 29 H 1.09004 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47320 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46415 * 299.99664 * 3 2 1 32 32 H 1.08995 * 109.47017 * 59.99292 * 3 2 1 33 33 H 1.08997 * 109.47520 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46755 * 300.00566 * 4 2 1 35 35 H 0.97002 * 119.99588 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47483 * 179.97438 * 13 2 1 37 37 H 1.09004 * 109.46806 * 60.00265 * 13 2 1 38 38 H 0.96999 * 119.99733 * 0.02562 * 14 13 2 39 39 H 1.08005 * 120.35065 * 359.97438 * 18 17 15 40 40 H 1.08000 * 125.25928 * 180.02562 * 22 21 20 41 41 H 1.08002 * 122.30877 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9170 0.8673 -2.3806 7 6 1.8705 -0.4823 -3.7320 8 7 1.4324 0.1378 -4.8057 9 14 2.9434 -2.0019 -3.9032 10 1 2.0840 -3.2121 -3.9485 11 1 3.7354 -1.9100 -5.1560 12 1 3.8638 -2.0915 -2.7413 13 6 2.0400 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8768 -0.4911 3.6696 16 8 2.6504 -1.4236 3.7831 17 6 1.2980 0.1318 4.8656 18 6 1.5265 -0.4063 6.1374 19 7 0.9881 0.1746 7.1886 20 6 0.2339 1.2739 7.0911 21 16 -0.5353 2.1597 8.3415 22 6 -1.1991 3.2984 7.1814 23 6 -0.8202 2.9623 5.9728 24 7 -0.0265 1.8448 5.8944 25 6 0.4960 1.2904 4.7633 26 8 0.2735 1.7901 3.6741 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1301 -0.7209 -1.2493 34 1 1.6767 -1.7489 -1.2491 35 1 1.6662 -0.1940 -5.6867 36 1 3.1300 -0.7215 1.2492 37 1 1.6767 -1.7488 1.2494 38 1 0.9936 0.7579 2.3564 39 1 2.1345 -1.2913 6.2544 40 1 -1.8226 4.1456 7.4261 41 1 -1.1132 3.5248 5.0986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345894852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:00 Heat of formation + Delta-G solvation = -21.011230 kcal Electronic energy + Delta-G solvation = -26334.485497 eV Core-core repulsion = 22534.040424 eV Total energy + Delta-G solvation = -3800.445073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.70997 -40.92332 -39.23114 -38.87028 -38.04494 -35.12915 -33.94859 -32.65565 -32.27977 -29.79005 -28.45604 -28.08051 -27.04371 -25.53271 -24.62900 -23.47464 -21.70288 -20.40228 -20.08996 -19.87601 -18.96629 -18.76572 -18.08306 -17.70186 -16.94344 -16.64472 -16.34045 -16.17324 -15.53299 -15.35742 -15.28131 -15.25062 -15.00492 -14.85256 -14.43934 -14.24307 -14.21117 -13.97235 -13.57633 -12.96474 -12.87533 -12.68552 -12.68072 -12.34912 -12.22180 -11.85599 -11.76589 -11.57211 -11.51571 -11.41877 -11.35056 -10.98490 -10.89251 -10.77662 -10.71491 -10.01692 -8.95830 -8.23318 -6.23870 -1.34949 -0.59116 0.03206 0.26965 0.66654 0.89397 1.35954 1.37881 1.49497 1.52382 2.30441 2.38907 2.47705 2.86280 2.91231 3.11578 3.70100 3.86327 3.97796 4.00180 4.04057 4.09966 4.17606 4.25521 4.60241 4.65858 4.67523 4.72530 4.87071 4.87643 4.96074 4.99894 5.01339 5.23130 5.32622 5.33565 5.45763 5.54123 5.60979 5.72738 6.17138 6.19452 6.36935 6.68304 6.81965 7.26933 7.38493 8.92505 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.002541 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.703863 B =11017.332725 C =11850.454931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 C -0.120 4.120 4 C -0.001 4.001 5 C -0.504 4.504 6 H 0.049 0.951 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.937 3.063 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.252 1.252 13 C 0.134 3.866 14 N -0.712 5.712 15 C 0.578 3.422 16 O -0.588 6.588 17 C -0.383 4.383 18 C 0.289 3.711 19 N -0.536 5.536 20 C 0.247 3.753 21 S 0.380 5.620 22 C -0.203 4.203 23 C 0.027 3.973 24 N -0.451 5.451 25 C 0.539 3.461 26 O -0.541 6.541 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.202 0.798 40 H 0.256 0.744 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 8.422 35.889 37.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.178 4.178 4 C -0.038 4.038 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.176 1.176 13 C 0.010 3.990 14 N -0.372 5.372 15 C 0.366 3.634 16 O -0.471 6.471 17 C -0.399 4.399 18 C 0.129 3.871 19 N -0.263 5.263 20 C -0.112 4.112 21 S 0.634 5.366 22 C -0.339 4.339 23 C -0.097 4.097 24 N -0.158 5.158 25 C 0.343 3.657 26 O -0.421 6.421 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.261 0.739 39 H 0.218 0.782 40 H 0.272 0.728 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.494 7.727 37.165 38.693 hybrid contribution 0.319 0.012 -3.480 3.495 sum -7.175 7.739 33.685 35.300 Atomic orbital electron populations 1.21656 0.94376 1.01154 1.00556 1.20548 0.96217 0.95952 0.93108 1.21657 1.00229 0.95321 1.00561 1.19550 0.96089 0.95539 0.92670 1.21337 1.30428 1.12297 0.90158 0.93311 1.25848 0.97421 1.00076 0.95704 1.70046 1.48119 1.42678 0.98439 0.85845 0.79815 0.80153 0.77982 1.19503 1.21209 1.17551 1.21354 0.98456 0.95638 0.83547 1.46600 1.53089 1.32760 1.04786 1.17476 0.80348 0.82390 0.83152 1.90742 1.37641 1.31391 1.87359 1.21100 1.17208 1.04440 0.97131 1.23421 0.85278 0.93930 0.84514 1.68395 1.17442 1.09279 1.31230 1.27037 0.97045 0.95644 0.91487 1.84401 1.40021 1.13886 0.98255 1.26172 1.07418 1.07415 0.92907 1.21554 0.95625 0.89103 1.03456 1.45257 1.38241 1.23310 1.08962 1.17243 0.80779 0.84939 0.82716 1.90664 1.61970 1.64158 1.25273 0.93031 0.93265 0.93242 0.93406 0.93242 0.93019 0.96386 0.96436 0.92773 0.92442 0.92207 0.73922 0.78168 0.72812 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.05 71.98 0.58 -4.31 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 3 C -0.12 -4.95 8.05 71.98 0.58 -4.37 16 4 C 0.00 -0.03 3.11 29.85 0.09 0.06 16 5 C -0.50 -29.07 8.20 25.60 0.21 -28.86 16 6 H 0.05 3.04 5.92 -2.91 -0.02 3.02 16 7 C 0.01 0.34 5.47 84.66 0.46 0.80 16 8 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 9 Si 0.94 46.11 27.47 68.60 1.88 48.00 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.25 -11.76 6.54 99.48 0.65 -11.11 16 13 C 0.13 5.28 4.57 86.38 0.39 5.68 16 14 N -0.71 -26.25 4.87 -467.01 -2.27 -28.52 16 15 C 0.58 20.72 7.73 86.47 0.67 21.39 16 16 O -0.59 -23.58 16.43 -4.34 -0.07 -23.66 16 17 C -0.38 -10.92 5.91 -19.89 -0.12 -11.04 16 18 C 0.29 6.44 10.85 85.15 0.92 7.37 16 19 N -0.54 -9.78 10.39 -196.86 -2.04 -11.82 16 20 C 0.25 3.43 8.07 179.29 1.45 4.88 16 21 S 0.38 0.78 23.14 -56.49 -1.31 -0.53 16 22 C -0.20 0.20 11.13 67.74 0.75 0.95 16 23 C 0.03 0.22 10.52 83.76 0.88 1.10 16 24 N -0.45 -7.61 2.82 -483.57 -1.36 -8.97 16 25 C 0.54 14.22 7.54 84.73 0.64 14.86 16 26 O -0.54 -16.91 14.11 -4.92 -0.07 -16.98 16 27 H 0.05 1.90 6.86 -2.39 -0.02 1.88 16 28 H 0.05 2.20 6.62 -2.39 -0.02 2.19 16 29 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.23 6.62 -2.38 -0.02 2.21 16 32 H 0.05 1.93 6.86 -2.39 -0.02 1.91 16 33 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 34 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.41 15.07 2.80 -92.71 -0.26 14.81 16 39 H 0.20 3.94 7.72 -2.91 -0.02 3.92 16 40 H 0.26 -2.65 8.06 -2.91 -0.02 -2.67 16 41 H 0.21 1.36 8.00 -2.91 -0.02 1.34 16 Total: -1.00 -82.63 348.80 3.31 -79.32 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.77 Total: 17.38 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.49 Total: 6.03 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.38 Total: -109.56 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.14 Total: -40.64 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 48.00 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -1.31 Total: -0.53 kcal Total: -82.63 3.31 -79.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345894852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.311 kcal (2) G-P(sol) polarization free energy of solvation -82.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds