Wall clock time and date at job start Tue Mar 31 2020 19:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 C 1.50710 * 109.46815 * 119.99854 * 2 1 3 5 5 H 1.08003 * 119.99701 * 120.00129 * 4 2 1 6 6 C 1.37872 * 119.99712 * 299.99938 * 4 2 1 7 7 N 1.31509 * 120.00523 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99684 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47217 * 60.00211 * 8 6 4 10 10 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47329 * 300.00072 * 8 6 4 12 12 N 1.46493 * 109.47312 * 239.99714 * 2 1 3 13 13 C 1.46504 * 120.00273 * 300.00181 * 12 2 1 14 14 C 1.34782 * 119.99978 * 120.00138 * 12 2 1 15 15 O 1.21280 * 119.99595 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00048 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47300 * 180.02562 * 16 14 12 18 18 C 1.50697 * 109.47300 * 180.02562 * 17 16 14 19 19 N 1.30967 * 126.42578 * 89.99984 * 18 17 16 20 20 C 1.35268 * 105.58193 * 180.02562 * 19 18 17 21 21 C 1.48230 * 126.43046 * 180.02562 * 20 19 18 22 22 C 1.39587 * 122.85010 * 179.71607 * 21 20 19 23 23 C 1.33162 * 113.73976 * 179.76927 * 22 21 20 24 24 S 1.75743 * 109.74332 * 0.47161 * 23 22 21 25 25 C 1.34460 * 122.84776 * 0.02562 * 21 20 19 26 26 N 1.30874 * 107.14647 * 359.97438 * 20 19 18 27 27 O 1.21290 * 110.07323 * 0.02562 * 26 20 19 28 28 H 1.08995 * 109.46456 * 60.00328 * 1 2 3 29 29 H 1.09003 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46955 * 300.00037 * 1 2 3 31 31 H 0.96999 * 120.00527 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.46844 * 270.00059 * 13 12 2 33 33 H 1.08997 * 109.47068 * 29.99586 * 13 12 2 34 34 H 1.08997 * 109.47062 * 150.00104 * 13 12 2 35 35 H 1.08999 * 109.47398 * 59.99412 * 16 14 12 36 36 H 1.09008 * 109.47091 * 299.99934 * 16 14 12 37 37 H 1.08995 * 109.47185 * 59.99401 * 17 16 14 38 38 H 1.09008 * 109.46746 * 299.99840 * 17 16 14 39 39 H 1.08004 * 123.13323 * 359.97271 * 22 21 20 40 40 H 1.07998 * 125.12763 * 180.17508 * 23 22 21 41 41 H 1.07998 * 124.73929 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0079 10 1 1.8267 -0.4198 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8911 16 6 3.2952 -0.7459 -3.3139 17 6 4.1459 0.2155 -4.1464 18 6 4.6473 -0.4946 -5.3774 19 7 4.0457 -0.5557 -6.5391 20 6 4.8590 -1.2913 -7.3311 21 6 4.6198 -1.6465 -8.7502 22 6 5.5163 -2.4083 -9.5016 23 6 5.1187 -2.6231 -10.7542 24 16 3.5701 -1.8387 -11.0283 25 6 3.5237 -1.2571 -9.4248 26 7 5.8972 -1.6297 -6.6098 27 8 5.7892 -1.1804 -5.4884 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7081 1.1609 3.4844 32 1 2.4159 -2.7378 -0.9715 33 1 0.6905 -2.3003 -0.9846 34 1 1.6240 -2.2853 -2.5001 35 1 2.4473 -1.0882 -3.9072 36 1 3.9006 -1.6026 -3.0176 37 1 4.9938 0.5573 -3.5529 38 1 3.5408 1.0724 -4.4428 39 1 6.4443 -2.7908 -9.1031 40 1 5.6676 -3.1895 -11.4919 41 1 2.7253 -0.6602 -9.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363467164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:58 Heat of formation + Delta-G solvation = 65.376545 kcal Electronic energy + Delta-G solvation = -25225.037702 eV Core-core repulsion = 21428.338684 eV Total energy + Delta-G solvation = -3796.699018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.66459 -39.26180 -38.65236 -35.96298 -35.45748 -34.23864 -32.89060 -31.28356 -30.09474 -29.37579 -26.29249 -25.99569 -25.46335 -25.15495 -23.20168 -22.37811 -20.88272 -19.52351 -18.53669 -18.15735 -18.01182 -17.54945 -16.68176 -16.30867 -15.80441 -15.49543 -15.28892 -14.49292 -14.21566 -13.91721 -13.87154 -13.54458 -13.19541 -13.04813 -12.92371 -12.67508 -12.58203 -12.33375 -12.18829 -11.90539 -11.58793 -11.51521 -11.37634 -11.26472 -11.15693 -11.06569 -10.83454 -10.72170 -10.36414 -10.28547 -10.18252 -9.34041 -9.21974 -9.03969 -8.71429 -8.44610 -7.65000 -6.08968 -4.17193 0.34365 1.00758 1.14892 1.49195 1.65648 2.63816 2.76755 3.26161 3.27557 3.32378 3.33605 3.35209 3.82964 3.95449 4.38152 4.53752 4.68561 4.81810 4.95195 5.00366 5.10606 5.15315 5.22466 5.40749 5.48293 5.53135 5.63666 5.72986 5.79540 5.89286 5.89992 5.94735 6.03496 6.26558 6.73630 6.79147 7.02534 7.37336 7.48150 7.69053 7.98145 7.98290 8.16699 8.47264 8.79072 8.97265 9.49336 10.96234 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.001944 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.141026 B =14402.782788 C =14707.446344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.084 3.916 14 C 0.507 3.493 15 O -0.552 6.552 16 C -0.138 4.138 17 C -0.014 4.014 18 C 0.200 3.800 19 N -0.477 5.477 20 C 0.228 3.772 21 C -0.042 4.042 22 C -0.107 4.107 23 C -0.232 4.232 24 S 0.192 5.808 25 C -0.202 4.202 26 N -0.379 5.379 27 O 0.082 5.918 28 H 0.012 0.988 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -7.183 -24.904 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.321 5.321 13 C -0.059 4.059 14 C 0.294 3.706 15 O -0.432 6.432 16 C -0.179 4.179 17 C -0.053 4.053 18 C -0.021 4.021 19 N -0.210 5.210 20 C -0.044 4.044 21 C -0.058 4.058 22 C -0.137 4.137 23 C -0.367 4.367 24 S 0.457 5.543 25 C -0.342 4.342 26 N -0.086 5.086 27 O 0.022 5.978 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.167 0.833 40 H 0.189 0.811 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.464 -6.742 -26.460 27.668 hybrid contribution 1.216 -0.725 2.378 2.768 sum 5.680 -7.467 -24.083 25.845 Atomic orbital electron populations 1.22103 0.98210 0.99379 1.00920 1.18970 0.90885 0.94559 0.79863 0.91738 1.21269 1.31935 1.13009 0.90268 0.92328 1.24894 0.94953 0.94985 0.98985 1.69860 1.36235 1.22573 1.23904 0.86549 0.79254 0.79551 0.81981 1.20225 1.21186 1.20266 1.48235 1.48659 1.11712 1.23528 1.21594 1.01828 0.83148 0.99379 1.20052 0.79455 0.87047 0.84092 1.90672 1.58554 1.16976 1.76980 1.21680 1.00822 0.99353 0.96065 1.20070 1.01617 0.96864 0.86756 1.28923 0.83178 0.93004 0.96968 1.72027 1.28610 1.19340 1.01065 1.23388 0.88124 0.96675 0.96200 1.16354 0.96560 1.04230 0.88633 1.20136 1.00838 0.99512 0.93200 1.25632 1.01157 1.09036 1.00912 1.83198 1.17548 1.45957 1.07626 1.25224 1.02918 1.06420 0.99617 1.74932 1.22267 1.19477 0.91939 1.85298 1.37532 1.49804 1.25191 0.96924 0.95107 0.88751 0.92603 0.93123 0.90736 0.92926 0.88571 0.88596 0.86840 0.86209 0.83293 0.81117 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.26 6.36 2.64 -69.08 -0.18 6.18 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.52 7.65 -52.48 -0.40 1.12 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -11.89 2.75 -175.25 -0.48 -12.37 16 13 C 0.08 1.33 9.48 59.85 0.57 1.90 16 14 C 0.51 9.50 7.67 -10.98 -0.08 9.42 16 15 O -0.55 -12.38 15.31 5.56 0.09 -12.30 16 16 C -0.14 -1.79 4.23 -27.89 -0.12 -1.90 16 17 C -0.01 -0.16 5.13 -27.89 -0.14 -0.31 16 18 C 0.20 2.48 7.75 -12.98 -0.10 2.38 16 19 N -0.48 -6.39 11.48 -9.86 -0.11 -6.50 16 20 C 0.23 3.02 7.88 -156.07 -1.23 1.79 16 21 C -0.04 -0.47 5.80 -106.62 -0.62 -1.08 16 22 C -0.11 -0.98 10.03 -40.85 -0.41 -1.39 16 23 C -0.23 -1.59 11.20 28.96 0.32 -1.27 16 24 S 0.19 1.26 23.09 -107.50 -2.48 -1.23 16 25 C -0.20 -1.87 10.67 29.40 0.31 -1.55 16 26 N -0.38 -5.17 12.11 30.99 0.38 -4.80 16 27 O 0.08 1.06 11.29 18.04 0.20 1.27 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.87 16 34 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 35 H 0.10 1.12 7.40 -51.93 -0.38 0.73 16 36 H 0.10 1.10 8.11 -51.92 -0.42 0.68 16 37 H 0.11 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.12 1.45 8.10 -51.92 -0.42 1.03 16 39 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -31.60 363.93 -8.04 -39.64 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.98 Total: 0.64 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.73 Total: -1.49 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.41 Total: -47.75 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.29 Total: -11.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.48 Total: -1.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.60 -8.04 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363467164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.014 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds