Wall clock time and date at job start Tue Mar 31 2020 19:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 C 1.50710 * 109.46815 * 119.99854 * 2 1 3 5 5 H 1.08003 * 119.99701 * 120.00129 * 4 2 1 6 6 C 1.37872 * 119.99712 * 299.99938 * 4 2 1 7 7 N 1.31509 * 120.00523 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99684 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47217 * 60.00211 * 8 6 4 10 10 H 1.48500 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47329 * 300.00072 * 8 6 4 12 12 N 1.46493 * 109.47312 * 239.99714 * 2 1 3 13 13 C 1.46504 * 120.00273 * 300.00181 * 12 2 1 14 14 C 1.34782 * 119.99978 * 120.00138 * 12 2 1 15 15 O 1.21280 * 119.99595 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00048 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47300 * 180.02562 * 16 14 12 18 18 C 1.50697 * 109.47300 * 180.02562 * 17 16 14 19 19 N 1.30967 * 126.42578 * 89.99984 * 18 17 16 20 20 C 1.35268 * 105.58193 * 180.02562 * 19 18 17 21 21 C 1.48230 * 126.43046 * 180.02562 * 20 19 18 22 22 C 1.39587 * 122.85010 * 179.71607 * 21 20 19 23 23 C 1.33162 * 113.73976 * 179.76927 * 22 21 20 24 24 S 1.75743 * 109.74332 * 0.47161 * 23 22 21 25 25 C 1.34460 * 122.84776 * 0.02562 * 21 20 19 26 26 N 1.30874 * 107.14647 * 359.97438 * 20 19 18 27 27 O 1.21290 * 110.07323 * 0.02562 * 26 20 19 28 28 H 1.08995 * 109.46456 * 60.00328 * 1 2 3 29 29 H 1.09003 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46955 * 300.00037 * 1 2 3 31 31 H 0.96999 * 120.00527 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.46844 * 270.00059 * 13 12 2 33 33 H 1.08997 * 109.47068 * 29.99586 * 13 12 2 34 34 H 1.08997 * 109.47062 * 150.00104 * 13 12 2 35 35 H 1.08999 * 109.47398 * 59.99412 * 16 14 12 36 36 H 1.09008 * 109.47091 * 299.99934 * 16 14 12 37 37 H 1.08995 * 109.47185 * 59.99401 * 17 16 14 38 38 H 1.09008 * 109.46746 * 299.99840 * 17 16 14 39 39 H 1.08004 * 123.13323 * 359.97271 * 22 21 20 40 40 H 1.07998 * 125.12763 * 180.17508 * 23 22 21 41 41 H 1.07998 * 124.73929 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0079 10 1 1.8267 -0.4198 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8911 16 6 3.2952 -0.7459 -3.3139 17 6 4.1459 0.2155 -4.1464 18 6 4.6473 -0.4946 -5.3774 19 7 4.0457 -0.5557 -6.5391 20 6 4.8590 -1.2913 -7.3311 21 6 4.6198 -1.6465 -8.7502 22 6 5.5163 -2.4083 -9.5016 23 6 5.1187 -2.6231 -10.7542 24 16 3.5701 -1.8387 -11.0283 25 6 3.5237 -1.2571 -9.4248 26 7 5.8972 -1.6297 -6.6098 27 8 5.7892 -1.1804 -5.4884 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7081 1.1609 3.4844 32 1 2.4159 -2.7378 -0.9715 33 1 0.6905 -2.3003 -0.9846 34 1 1.6240 -2.2853 -2.5001 35 1 2.4473 -1.0882 -3.9072 36 1 3.9006 -1.6026 -3.0176 37 1 4.9938 0.5573 -3.5529 38 1 3.5408 1.0724 -4.4428 39 1 6.4443 -2.7908 -9.1031 40 1 5.6676 -3.1895 -11.4919 41 1 2.7253 -0.6602 -9.0095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363467164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:58 Heat of formation + Delta-G solvation = 45.453501 kcal Electronic energy + Delta-G solvation = -25225.901630 eV Core-core repulsion = 21428.338684 eV Total energy + Delta-G solvation = -3797.562946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.64281 -40.78293 -39.32965 -37.29557 -36.77344 -35.33607 -34.73032 -32.48030 -31.08551 -30.74415 -27.62362 -27.29148 -26.94648 -26.46558 -24.05915 -23.38871 -22.45693 -20.26643 -19.93700 -19.16395 -18.88279 -18.47744 -18.36527 -17.83569 -17.09103 -16.74162 -16.51338 -16.13134 -15.45669 -15.04495 -14.58610 -14.55366 -14.40911 -14.28631 -13.96947 -13.79213 -13.62576 -13.52634 -13.41367 -13.31105 -13.00321 -12.89375 -12.74521 -12.66458 -12.58645 -12.27197 -12.16037 -12.13480 -12.09789 -11.93685 -11.32382 -11.15053 -10.65865 -10.45115 -9.94371 -9.34701 -9.29924 -8.11912 -6.28068 -0.39595 0.13195 0.58164 0.83908 0.89998 1.43509 1.45360 1.52576 1.64643 1.82221 1.95366 2.32535 2.44665 2.59676 2.97090 3.15973 3.58985 3.81241 3.95928 4.00421 4.03431 4.34660 4.39253 4.47444 4.52434 4.58100 4.63888 4.74251 4.82421 4.86641 4.92275 4.94617 4.99467 5.07719 5.11191 5.17020 5.26826 5.49847 5.64883 5.70337 6.06077 6.19530 6.79837 6.85888 7.02164 7.34106 7.50146 8.91893 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.001944 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.141026 B =14402.782788 C =14707.446344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.013 0.987 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.601 5.601 13 C 0.081 3.919 14 C 0.500 3.500 15 O -0.598 6.598 16 C -0.121 4.121 17 C -0.006 4.006 18 C 0.208 3.792 19 N -0.490 5.490 20 C 0.225 3.775 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.222 4.222 24 S 0.253 5.747 25 C -0.216 4.216 26 N -0.395 5.395 27 O 0.077 5.923 28 H 0.021 0.979 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.201 0.799 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -9.425 -26.983 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.031 0.969 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.331 5.331 13 C -0.062 4.062 14 C 0.289 3.711 15 O -0.480 6.480 16 C -0.161 4.161 17 C -0.046 4.046 18 C -0.013 4.013 19 N -0.224 5.224 20 C -0.047 4.047 21 C -0.089 4.089 22 C -0.159 4.159 23 C -0.358 4.358 24 S 0.519 5.481 25 C -0.356 4.356 26 N -0.104 5.104 27 O 0.019 5.981 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.218 0.782 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.592 -9.022 -28.559 30.301 hybrid contribution 1.148 0.004 2.881 3.101 sum 5.739 -9.018 -25.679 27.815 Atomic orbital electron populations 1.21891 0.97301 1.00070 1.00005 1.18540 0.91548 0.92389 0.81705 0.96894 1.21554 1.31791 1.13002 0.91143 0.92099 1.25723 0.95186 0.95681 1.02006 1.70008 1.37301 1.23888 1.24409 0.85543 0.78442 0.78932 0.78285 1.20227 1.21118 1.18870 1.48226 1.49028 1.13415 1.22459 1.21837 1.01613 0.80451 1.02271 1.20976 0.78352 0.86657 0.85098 1.90651 1.59948 1.19262 1.78180 1.21581 1.01910 0.99307 0.93327 1.19973 1.01602 0.96488 0.86492 1.28858 0.82990 0.92632 0.96797 1.72032 1.29087 1.19805 1.01433 1.23852 0.87687 0.96006 0.97152 1.16606 0.98052 1.06144 0.88086 1.20155 1.01008 1.00591 0.94114 1.26035 1.01312 1.07895 1.00520 1.83012 1.16371 1.43968 1.04787 1.25412 1.02433 1.06389 1.01415 1.74920 1.22854 1.20422 0.92224 1.85277 1.37671 1.49979 1.25162 0.95953 0.93457 0.91498 0.92710 0.92456 0.91269 0.88695 0.86306 0.86263 0.86542 0.86475 0.83610 0.78231 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.95 71.98 0.64 -5.68 16 2 C 0.26 13.15 2.64 44.25 0.12 13.27 16 3 H 0.01 0.79 6.90 -2.39 -0.02 0.77 16 4 C -0.54 -28.53 8.37 25.60 0.21 -28.32 16 5 H 0.06 3.13 7.65 -2.91 -0.02 3.11 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.34 11.32 21.44 0.24 -52.10 16 8 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 12 N -0.60 -23.86 2.75 -826.77 -2.28 -26.14 16 13 C 0.08 2.35 9.48 127.77 1.21 3.56 16 14 C 0.50 18.54 7.67 87.66 0.67 19.21 16 15 O -0.60 -27.57 15.31 -3.03 -0.05 -27.62 16 16 C -0.12 -2.87 4.23 29.85 0.13 -2.75 16 17 C -0.01 -0.14 5.13 29.85 0.15 0.01 16 18 C 0.21 4.95 7.75 88.35 0.68 5.64 16 19 N -0.49 -12.74 11.48 -302.36 -3.47 -16.21 16 20 C 0.22 5.84 7.88 137.19 1.08 6.92 16 21 C -0.07 -1.55 5.80 -21.16 -0.12 -1.67 16 22 C -0.13 -2.22 10.03 21.45 0.22 -2.00 16 23 C -0.22 -2.46 11.20 66.68 0.75 -1.72 16 24 S 0.25 2.63 23.09 -56.49 -1.30 1.33 16 25 C -0.22 -3.71 10.67 66.96 0.71 -3.00 16 26 N -0.40 -10.66 12.11 -58.95 -0.71 -11.38 16 27 O 0.08 1.96 11.29 74.64 0.84 2.80 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 30 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 34 H 0.09 1.95 6.44 -2.39 -0.02 1.94 16 35 H 0.12 2.36 7.40 -2.39 -0.02 2.34 16 36 H 0.12 2.36 8.11 -2.38 -0.02 2.34 16 37 H 0.12 2.61 8.10 -2.39 -0.02 2.59 16 38 H 0.12 2.78 8.10 -2.38 -0.02 2.76 16 39 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -71.11 363.93 3.27 -67.84 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.07 Total: 12.19 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.91 Total: 4.66 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -6.22 Total: -105.83 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.80 Total: -24.82 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.30 Total: 1.33 kcal Total: -71.11 3.27 -67.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363467164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.292 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds