Wall clock time and date at job start Tue Mar 31 2020 18:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75348 * 124.29655 * 2 1 4 4 C 1.75755 * 92.18976 * 179.91282 * 3 2 1 5 5 N 1.33845 * 131.29237 * 180.02562 * 4 3 2 6 6 C 1.31262 * 120.99268 * 180.35521 * 5 4 3 7 7 C 1.50705 * 118.92314 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46766 * 269.97707 * 7 6 5 9 9 C 1.50705 * 109.47146 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99685 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00308 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00130 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47047 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99970 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99799 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46777 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47062 * 119.99944 * 17 15 13 20 20 H 1.48496 * 109.47615 * 240.00447 * 17 15 13 21 21 N 1.32126 * 122.15770 * 359.97438 * 6 5 4 22 22 C 1.32264 * 121.22402 * 0.02562 * 21 6 5 23 23 O 1.35454 * 120.50965 * 180.02562 * 22 21 6 24 24 C 1.39811 * 109.60733 * 0.34459 * 4 3 2 25 25 C 1.31872 * 124.28774 * 180.29762 * 2 1 3 26 26 C 1.50693 * 122.59710 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47015 * 269.70378 * 1 2 3 28 28 H 1.09000 * 109.46646 * 29.69530 * 1 2 3 29 29 H 1.09000 * 109.47248 * 149.70248 * 1 2 3 30 30 H 1.09005 * 109.47091 * 29.97224 * 7 6 5 31 31 H 1.08995 * 109.47429 * 149.97362 * 7 6 5 32 32 H 1.08997 * 109.47151 * 299.99734 * 8 7 6 33 33 H 1.09001 * 109.47372 * 60.00067 * 8 7 6 34 34 H 0.97000 * 119.99903 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47347 * 300.00424 * 12 11 9 36 36 H 1.09001 * 109.46639 * 60.00428 * 12 11 9 37 37 H 0.96996 * 119.99931 * 180.02562 * 16 15 13 38 38 H 0.96696 * 114.00037 * 269.97056 * 23 22 21 39 39 H 1.09004 * 109.47350 * 89.97517 * 26 25 2 40 40 H 1.09005 * 109.47032 * 209.97006 * 26 25 2 41 41 H 1.08990 * 109.47288 * 329.97146 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4951 1.4486 0.0000 4 6 3.9839 0.5145 0.0027 5 7 5.2665 0.8969 0.0044 6 6 6.2357 0.0117 -0.0007 7 6 7.6635 0.4941 0.0021 8 6 8.1468 0.6652 -1.4394 9 6 9.5747 1.1470 -1.4367 10 8 10.1490 1.3355 -0.3852 11 7 10.2135 1.3684 -2.6026 12 6 11.6014 1.8373 -2.5999 13 6 12.0775 2.0057 -4.0197 14 1 11.4126 1.7858 -4.8419 15 6 13.3619 2.4404 -4.2692 16 7 14.1718 2.7077 -3.2680 17 14 13.9524 2.6485 -6.0291 18 1 12.8580 2.2844 -6.9647 19 1 14.3464 4.0623 -6.2552 20 1 15.1217 1.7646 -6.2668 21 7 6.0006 -1.2885 -0.0072 22 6 4.7657 -1.7619 -0.0095 23 8 4.5413 -3.0978 -0.0157 24 6 3.6813 -0.8505 -0.0045 25 6 2.2500 -1.0895 -0.0057 26 6 1.6584 -2.4755 -0.0134 27 1 -0.3633 -0.0053 1.0276 28 1 -0.3632 0.8927 -0.5091 29 1 -0.3634 -0.8873 -0.5184 30 1 7.7227 1.4509 0.5211 31 1 8.2925 -0.2354 0.5121 32 1 8.0876 -0.2915 -1.9584 33 1 7.5177 1.3948 -1.9494 34 1 9.7540 1.2180 -3.4435 35 1 11.6606 2.7942 -2.0813 36 1 12.2303 1.1079 -2.0895 37 1 15.0753 3.0139 -3.4435 38 1 4.4757 -3.4815 -0.9008 39 1 1.5157 -2.8039 -1.0430 40 1 2.3344 -3.1619 0.4965 41 1 0.6973 -2.4632 0.5005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:09 Heat of formation + Delta-G solvation = -30.439637 kcal Electronic energy + Delta-G solvation = -24876.743468 eV Core-core repulsion = 21075.889549 eV Total energy + Delta-G solvation = -3800.853919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62520 -38.92500 -38.11071 -37.74026 -34.30571 -33.79920 -33.17878 -32.30766 -31.30033 -29.70647 -27.80778 -26.70335 -25.29296 -24.21518 -22.92755 -21.92208 -19.87768 -19.61992 -19.28762 -18.53913 -17.34152 -17.21178 -16.54603 -15.85045 -15.64240 -15.21134 -15.11746 -14.89801 -14.46069 -14.14105 -14.08146 -13.91409 -13.40208 -13.33469 -13.14645 -13.04866 -12.66526 -12.42908 -12.34564 -12.23725 -11.91055 -11.71497 -11.56193 -11.28750 -11.03626 -10.96542 -10.90773 -10.87166 -10.82510 -10.30856 -9.61620 -9.36684 -9.24624 -9.02230 -8.72918 -8.40560 -7.86633 -6.15526 -4.22254 -0.04469 0.46691 0.69188 1.39469 1.62087 2.83462 3.23314 3.24243 3.31247 3.34337 3.38757 3.61477 3.91472 4.09747 4.18578 4.39662 4.44927 4.53776 4.72394 4.86945 4.98252 5.04488 5.07331 5.13582 5.20470 5.25478 5.29633 5.39657 5.45259 5.62146 5.74433 5.80431 5.91372 6.00560 6.19481 6.48841 6.88612 7.32589 7.45215 7.53983 7.67835 7.71417 7.98497 8.63906 8.79066 9.11082 9.44316 10.94724 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.104166 B =14229.047004 C =14511.196263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.179 4.179 3 S 0.171 5.829 4 C 0.103 3.897 5 N -0.488 5.488 6 C 0.369 3.631 7 C -0.035 4.035 8 C -0.132 4.132 9 C 0.502 3.498 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.248 3.752 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.530 5.530 22 C 0.418 3.582 23 O -0.468 6.468 24 C -0.199 4.199 25 C -0.067 4.067 26 C -0.102 4.102 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.391 0.609 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.410 0.590 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.666 -9.747 4.839 33.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.295 4.295 3 S 0.432 5.568 4 C -0.148 4.148 5 N -0.206 5.206 6 C 0.099 3.901 7 C -0.075 4.075 8 C -0.174 4.174 9 C 0.286 3.714 10 O -0.435 6.435 11 N -0.360 5.360 12 C 0.128 3.872 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.255 5.255 22 C 0.221 3.779 23 O -0.276 6.276 24 C -0.214 4.214 25 C -0.079 4.079 26 C -0.161 4.161 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.223 0.777 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.270 0.730 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.513 -7.607 6.220 32.056 hybrid contribution -0.211 -1.785 -1.819 2.557 sum -30.724 -9.392 4.402 32.427 Atomic orbital electron populations 1.20410 0.86783 1.03674 1.03290 1.23920 1.00613 0.95649 1.09346 1.84370 0.90195 1.05342 1.76873 1.23868 0.97577 0.93938 0.99464 1.67955 0.97363 1.38879 1.16366 1.23150 0.96180 0.82562 0.88240 1.20238 0.85223 1.04033 0.97996 1.21569 0.95519 1.03335 0.96942 1.20256 0.87696 0.78666 0.84749 1.90670 1.68408 1.53156 1.31272 1.46452 1.16720 1.65929 1.06919 1.19123 0.75460 0.95256 0.97393 1.21270 0.98410 1.46821 0.91592 0.91857 1.24962 0.96426 0.94949 0.97768 1.69985 1.07197 1.44283 1.30788 0.86360 0.78761 0.77865 0.83906 1.19661 1.20804 1.20804 1.67761 1.22611 1.17725 1.17432 1.19249 0.86082 0.84297 0.88265 1.84665 1.92471 1.16219 1.34279 1.20641 0.95035 0.94351 1.11360 1.19244 0.89374 0.96960 1.02280 1.20667 1.01201 0.91484 1.02731 0.90184 0.90774 0.89975 0.87754 0.87708 0.89038 0.89013 0.77680 0.95465 0.95450 0.92505 0.72955 0.90818 0.89884 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 9.66 36.01 0.35 0.01 16 2 C -0.18 -1.33 6.38 -36.21 -0.23 -1.56 16 3 S 0.17 1.58 23.20 -107.50 -2.49 -0.91 16 4 C 0.10 1.28 7.69 -16.09 -0.12 1.15 16 5 N -0.49 -6.91 10.36 -9.46 -0.10 -7.01 16 6 C 0.37 5.19 6.89 -157.36 -1.08 4.11 16 7 C -0.04 -0.51 4.93 -27.88 -0.14 -0.65 16 8 C -0.13 -1.92 5.68 -27.88 -0.16 -2.08 16 9 C 0.50 9.97 7.83 -10.99 -0.09 9.89 16 10 O -0.56 -13.23 15.98 5.56 0.09 -13.14 16 11 N -0.71 -15.08 5.55 -61.47 -0.34 -15.42 16 12 C 0.25 6.63 5.43 -5.19 -0.03 6.61 16 13 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 17 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 N -0.53 -7.18 10.31 -10.36 -0.11 -7.29 16 22 C 0.42 4.74 7.90 -16.06 -0.13 4.61 16 23 O -0.47 -3.83 11.51 -18.05 -0.21 -4.04 16 24 C -0.20 -2.18 6.05 -105.28 -0.64 -2.81 16 25 C -0.07 -0.54 5.96 -103.80 -0.62 -1.16 16 26 C -0.10 -0.53 9.15 36.00 0.33 -0.20 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.23 7.19 -51.93 -0.37 -0.15 16 30 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.41 1.29 9.06 45.56 0.41 1.71 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.47 6.49 -51.93 -0.34 0.14 16 41 H 0.07 0.28 7.15 -51.93 -0.37 -0.09 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -35.41 366.66 -9.23 -44.64 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.34 Total: 2.78 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.97 Total: 4.42 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.19 Total: -55.22 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.12 Total: -17.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.49 Total: -0.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.41 -9.23 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.202 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds