Wall clock time and date at job start Tue Mar 31 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75348 * 124.29655 * 2 1 4 4 C 1.75755 * 92.18976 * 179.91282 * 3 2 1 5 5 N 1.33845 * 131.29237 * 180.02562 * 4 3 2 6 6 C 1.31262 * 120.99268 * 180.35521 * 5 4 3 7 7 C 1.50705 * 118.92314 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46766 * 269.97707 * 7 6 5 9 9 C 1.50705 * 109.47146 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99685 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00308 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00130 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47047 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99970 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99799 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00336 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46777 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47062 * 119.99944 * 17 15 13 20 20 H 1.48496 * 109.47615 * 240.00447 * 17 15 13 21 21 N 1.32126 * 122.15770 * 359.97438 * 6 5 4 22 22 C 1.32264 * 121.22402 * 0.02562 * 21 6 5 23 23 O 1.35454 * 120.50965 * 180.02562 * 22 21 6 24 24 C 1.39811 * 109.60733 * 0.34459 * 4 3 2 25 25 C 1.31872 * 124.28774 * 180.29762 * 2 1 3 26 26 C 1.50693 * 122.59710 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47015 * 269.70378 * 1 2 3 28 28 H 1.09000 * 109.46646 * 29.69530 * 1 2 3 29 29 H 1.09000 * 109.47248 * 149.70248 * 1 2 3 30 30 H 1.09005 * 109.47091 * 29.97224 * 7 6 5 31 31 H 1.08995 * 109.47429 * 149.97362 * 7 6 5 32 32 H 1.08997 * 109.47151 * 299.99734 * 8 7 6 33 33 H 1.09001 * 109.47372 * 60.00067 * 8 7 6 34 34 H 0.97000 * 119.99903 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47347 * 300.00424 * 12 11 9 36 36 H 1.09001 * 109.46639 * 60.00428 * 12 11 9 37 37 H 0.96996 * 119.99931 * 180.02562 * 16 15 13 38 38 H 0.96696 * 114.00037 * 269.97056 * 23 22 21 39 39 H 1.09004 * 109.47350 * 89.97517 * 26 25 2 40 40 H 1.09005 * 109.47032 * 209.97006 * 26 25 2 41 41 H 1.08990 * 109.47288 * 329.97146 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4951 1.4486 0.0000 4 6 3.9839 0.5145 0.0027 5 7 5.2665 0.8969 0.0044 6 6 6.2357 0.0117 -0.0007 7 6 7.6635 0.4941 0.0021 8 6 8.1468 0.6652 -1.4394 9 6 9.5747 1.1470 -1.4367 10 8 10.1490 1.3355 -0.3852 11 7 10.2135 1.3684 -2.6026 12 6 11.6014 1.8373 -2.5999 13 6 12.0775 2.0057 -4.0197 14 1 11.4126 1.7858 -4.8419 15 6 13.3619 2.4404 -4.2692 16 7 14.1718 2.7077 -3.2680 17 14 13.9524 2.6485 -6.0291 18 1 12.8580 2.2844 -6.9647 19 1 14.3464 4.0623 -6.2552 20 1 15.1217 1.7646 -6.2668 21 7 6.0006 -1.2885 -0.0072 22 6 4.7657 -1.7619 -0.0095 23 8 4.5413 -3.0978 -0.0157 24 6 3.6813 -0.8505 -0.0045 25 6 2.2500 -1.0895 -0.0057 26 6 1.6584 -2.4755 -0.0134 27 1 -0.3633 -0.0053 1.0276 28 1 -0.3632 0.8927 -0.5091 29 1 -0.3634 -0.8873 -0.5184 30 1 7.7227 1.4509 0.5211 31 1 8.2925 -0.2354 0.5121 32 1 8.0876 -0.2915 -1.9584 33 1 7.5177 1.3948 -1.9494 34 1 9.7540 1.2180 -3.4435 35 1 11.6606 2.7942 -2.0813 36 1 12.2303 1.1079 -2.0895 37 1 15.0753 3.0139 -3.4435 38 1 4.4757 -3.4815 -0.9008 39 1 1.5157 -2.8039 -1.0430 40 1 2.3344 -3.1619 0.4965 41 1 0.6973 -2.4632 0.5005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427633805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:08 Heat of formation + Delta-G solvation = -58.629482 kcal Electronic energy + Delta-G solvation = -24877.965871 eV Core-core repulsion = 21075.889549 eV Total energy + Delta-G solvation = -3802.076323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48523 -40.57828 -38.91589 -38.39025 -36.20396 -34.87534 -34.35315 -34.12826 -32.11991 -30.26526 -29.50442 -27.73419 -26.35497 -25.16491 -24.41198 -23.27628 -21.34275 -20.52257 -20.07894 -19.36116 -18.99363 -18.03453 -17.72874 -17.13092 -17.07790 -16.70669 -16.52284 -16.04814 -15.60442 -15.12686 -14.95948 -14.82211 -14.60898 -14.37557 -14.04179 -13.84558 -13.64277 -13.61215 -13.50560 -13.33666 -13.06037 -12.88978 -12.83137 -12.75537 -12.45769 -12.22249 -12.19631 -11.88363 -11.72280 -11.62822 -11.45664 -10.81822 -10.81640 -10.52924 -9.94417 -9.83326 -9.10345 -8.29203 -6.45653 -0.85496 -0.39950 -0.05642 0.73665 0.95746 1.43010 1.44281 1.57709 1.74331 2.02504 2.28870 2.34748 2.50410 2.87560 3.05607 3.24704 3.33238 3.64920 3.73980 3.91822 4.11136 4.11899 4.27098 4.33490 4.52313 4.66189 4.74927 4.77417 4.83531 4.84457 4.88230 5.05200 5.12797 5.13201 5.17640 5.25130 5.47668 5.48787 5.61022 5.68800 5.85044 6.37467 6.65451 6.78910 6.88542 7.23213 7.47267 8.83214 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.104166 B =14229.047004 C =14511.196263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.166 4.166 3 S 0.175 5.825 4 C 0.069 3.931 5 N -0.509 5.509 6 C 0.357 3.643 7 C -0.029 4.029 8 C -0.111 4.111 9 C 0.501 3.499 10 O -0.599 6.599 11 N -0.707 5.707 12 C 0.264 3.736 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.279 1.279 21 N -0.551 5.551 22 C 0.419 3.581 23 O -0.465 6.465 24 C -0.197 4.197 25 C -0.079 4.079 26 C -0.098 4.098 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.409 0.591 35 H -0.011 1.011 36 H -0.011 1.011 37 H 0.269 0.731 38 H 0.431 0.569 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.085 -11.060 2.810 36.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.282 4.282 3 S 0.436 5.564 4 C -0.182 4.182 5 N -0.227 5.227 6 C 0.086 3.914 7 C -0.069 4.069 8 C -0.152 4.152 9 C 0.288 3.712 10 O -0.481 6.481 11 N -0.357 5.357 12 C 0.141 3.859 13 C -0.593 4.593 14 H 0.102 0.898 15 C -0.198 4.198 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.176 1.176 19 H -0.205 1.205 20 H -0.204 1.204 21 N -0.277 5.277 22 C 0.222 3.778 23 O -0.276 6.276 24 C -0.213 4.213 25 C -0.090 4.090 26 C -0.157 4.157 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.245 0.755 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.077 0.923 38 H 0.296 0.704 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -34.003 -8.953 4.159 35.407 hybrid contribution 0.681 -1.417 -1.091 1.914 sum -33.322 -10.370 3.068 35.033 Atomic orbital electron populations 1.20607 0.84016 1.05135 1.04562 1.24398 1.02103 0.94207 1.07487 1.84335 0.89223 1.06571 1.76226 1.24321 0.97667 0.95527 1.00652 1.67878 0.98324 1.39348 1.17121 1.22761 0.95663 0.83030 0.89943 1.20042 0.86098 1.03158 0.97565 1.21439 0.91247 1.04732 0.97753 1.21169 0.89472 0.77120 0.83423 1.90650 1.69942 1.54684 1.32816 1.46196 1.14897 1.66090 1.08512 1.18575 0.77994 0.92375 0.96918 1.21657 0.99079 1.46631 0.91951 0.89804 1.26087 0.96580 0.94237 1.02871 1.70146 1.07776 1.45265 1.33743 0.85097 0.78483 0.77760 0.77776 1.17649 1.20465 1.20427 1.67715 1.23994 1.17438 1.18587 1.19365 0.85624 0.85359 0.87428 1.84638 1.92202 1.14613 1.36179 1.20955 0.96486 0.93678 1.10167 1.19526 0.87963 0.98773 1.02781 1.20733 1.01609 0.89260 1.04058 0.88857 0.89872 0.87912 0.89006 0.88778 0.86594 0.86922 0.75542 0.99344 0.99270 0.92252 0.70395 0.89041 0.90487 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 9.66 71.24 0.69 0.32 16 2 C -0.17 -2.02 6.38 24.87 0.16 -1.86 16 3 S 0.18 3.04 23.20 -56.49 -1.31 1.73 16 4 C 0.07 1.67 7.69 84.77 0.65 2.33 16 5 N -0.51 -14.59 10.36 -183.85 -1.90 -16.50 16 6 C 0.36 10.20 6.89 138.81 0.96 11.15 16 7 C -0.03 -0.86 4.93 29.85 0.15 -0.72 16 8 C -0.11 -3.19 5.68 29.85 0.17 -3.02 16 9 C 0.50 20.43 7.83 87.66 0.69 21.12 16 10 O -0.60 -30.03 15.98 -3.04 -0.05 -30.08 16 11 N -0.71 -30.48 5.55 -466.79 -2.59 -33.07 16 12 C 0.26 14.74 5.43 85.63 0.46 15.21 16 13 C -0.56 -30.58 9.28 25.60 0.24 -30.35 16 14 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 17 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 18 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 N -0.55 -14.84 10.31 -299.69 -3.09 -17.94 16 22 C 0.42 9.09 7.90 85.47 0.68 9.77 16 23 O -0.46 -6.79 11.51 -87.51 -1.01 -7.79 16 24 C -0.20 -4.08 6.05 -20.29 -0.12 -4.21 16 25 C -0.08 -1.10 5.96 -18.92 -0.11 -1.21 16 26 C -0.10 -0.68 9.15 71.23 0.65 -0.02 16 27 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.10 0.10 7.19 -2.39 -0.02 0.08 16 30 H 0.09 2.92 8.10 -2.38 -0.02 2.90 16 31 H 0.09 2.96 8.10 -2.39 -0.02 2.95 16 32 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.41 14.51 8.32 -92.71 -0.77 13.73 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.43 1.74 9.06 -74.06 -0.67 1.07 16 39 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.08 0.66 6.49 -2.38 -0.02 0.64 16 41 H 0.09 0.31 7.15 -2.39 -0.02 0.30 16 Total: -1.00 -80.52 366.66 -2.26 -82.78 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.34 Total: 13.50 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 5.71 Total: 19.05 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -7.30 Total: -123.97 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.06 Total: -37.87 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.31 Total: 1.73 kcal Total: -80.52 -2.26 -82.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.150 kcal (2) G-P(sol) polarization free energy of solvation -80.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds