Wall clock time and date at job start Tue Mar 31 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99703 * 2 1 4 4 N 1.46905 * 109.47034 * 124.10752 * 3 2 1 5 5 C 1.46900 * 110.99590 * 298.45967 * 4 3 2 6 6 C 1.50699 * 109.47446 * 287.94607 * 5 4 3 7 7 H 1.08004 * 119.99690 * 354.68920 * 6 5 4 8 8 C 1.37874 * 120.00216 * 174.68502 * 6 5 4 9 9 N 1.31513 * 119.99692 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46826 * 90.00345 * 10 8 6 12 12 H 1.48502 * 109.47118 * 209.99648 * 10 8 6 13 13 H 1.48494 * 109.47341 * 330.00105 * 10 8 6 14 14 C 1.46901 * 110.99944 * 62.41436 * 4 3 2 15 15 C 1.50697 * 109.47207 * 66.04805 * 14 4 3 16 16 N 1.28504 * 118.13149 * 359.97438 * 15 14 4 17 17 C 1.36186 * 127.55863 * 182.66382 * 16 15 14 18 18 C 1.39773 * 120.49621 * 193.27686 * 17 16 15 19 19 C 1.37894 * 119.90495 * 178.93050 * 18 17 16 20 20 C 1.38362 * 120.65617 * 359.97438 * 19 18 17 21 21 C 1.38637 * 119.98709 * 0.24545 * 20 19 18 22 22 C 1.37094 * 119.62511 * 359.94601 * 21 20 19 23 23 S 1.76945 * 121.48295 * 179.21744 * 22 21 20 24 24 O 1.42097 * 106.99693 * 270.22635 * 23 22 21 25 25 O 1.42103 * 106.99093 * 44.73303 * 23 22 21 26 26 N 1.37409 * 118.13384 * 180.02562 * 15 14 4 27 27 H 1.07997 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99388 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00334 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47023 * 4.10649 * 3 2 1 31 31 H 1.09003 * 109.47054 * 244.10345 * 3 2 1 32 32 H 1.09001 * 109.47127 * 47.95135 * 5 4 3 33 33 H 1.09006 * 109.46701 * 167.94932 * 5 4 3 34 34 H 0.97007 * 120.00025 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.47012 * 306.04307 * 14 4 3 36 36 H 1.08999 * 109.46540 * 186.04694 * 14 4 3 37 37 H 1.07999 * 120.04300 * 358.91631 * 18 17 16 38 38 H 1.08004 * 119.66551 * 180.02562 * 19 18 17 39 39 H 1.08008 * 120.00265 * 180.24622 * 20 19 18 40 40 H 1.08008 * 120.19344 * 179.97438 * 21 20 19 41 41 H 0.97001 * 121.77493 * 329.93690 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3409 1.1468 5 6 2.2427 1.2581 2.4142 6 6 1.5189 2.5569 2.6597 7 1 1.6669 3.3923 1.9914 8 6 0.6677 2.6787 3.7375 9 7 0.4879 1.6615 4.5515 10 14 -0.2300 4.2884 4.0415 11 1 -1.5337 4.2698 3.3307 12 1 -0.4630 4.4578 5.4983 13 1 0.5928 5.4170 3.5372 14 6 3.9847 0.2727 1.0514 15 6 4.8808 0.5296 -0.1327 16 7 4.6576 1.5751 -0.8458 17 6 5.3097 1.9633 -1.9766 18 6 5.1415 3.2546 -2.4845 19 6 5.8248 3.6420 -3.6179 20 6 6.6793 2.7642 -4.2611 21 6 6.8512 1.4793 -3.7697 22 6 6.1716 1.0871 -2.6455 23 16 6.3385 -0.5471 -1.9879 24 8 5.3437 -1.3488 -2.6100 25 8 7.7247 -0.8594 -1.9984 26 7 5.8892 -0.3679 -0.3889 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0736 31 1 2.6338 1.3954 -0.9245 32 1 1.5201 0.4438 2.3612 33 1 2.9413 1.0716 3.2299 34 1 -0.1112 1.7470 5.3097 35 1 3.4833 -0.6869 0.9262 36 1 4.5829 0.2539 1.9624 37 1 4.4771 3.9478 -1.9901 38 1 5.6922 4.6408 -4.0068 39 1 7.2123 3.0800 -5.1458 40 1 7.5171 0.7912 -4.2694 41 1 6.3183 -0.8706 0.3212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428835121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:14 Heat of formation + Delta-G solvation = 28.297026 kcal Electronic energy + Delta-G solvation = -26930.398118 eV Core-core repulsion = 23132.091212 eV Total energy + Delta-G solvation = -3798.306906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28979 -38.54922 -37.56129 -36.70980 -36.26455 -33.70313 -32.80541 -32.20059 -31.52922 -29.97996 -27.88855 -26.58645 -24.49456 -23.80782 -22.74775 -21.39714 -20.60572 -19.56676 -19.08620 -18.95713 -17.85760 -17.10164 -16.29126 -16.13480 -15.63884 -15.48974 -15.16279 -14.65938 -14.35640 -14.31662 -14.15040 -14.05768 -13.56076 -13.03745 -12.82826 -12.69120 -12.50820 -12.42595 -12.16234 -12.08044 -12.03855 -11.53301 -11.18722 -11.07849 -10.93423 -10.76309 -10.65076 -10.52081 -10.43708 -9.94833 -9.78664 -9.64371 -9.22711 -8.68048 -8.41514 -8.22539 -7.27821 -6.01397 -4.01428 -0.16265 0.26338 0.87045 2.19385 2.28442 2.92144 3.02462 3.32548 3.39220 3.43384 3.47733 3.74373 4.25350 4.38028 4.44580 4.57614 4.73888 4.87518 4.92730 5.11968 5.21322 5.34607 5.40058 5.55003 5.55402 5.64308 5.81331 5.84650 5.90328 5.93641 6.15580 6.30526 6.40290 6.47430 6.57597 6.83262 7.15237 7.23240 7.33412 7.44225 7.78998 7.95936 8.07536 8.17570 8.51836 9.06783 9.62374 11.09252 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.003565 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.512223 B = 7852.381243 C = 8591.360283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.188 4.188 3 C 0.085 3.915 4 N -0.505 5.505 5 C 0.188 3.812 6 C -0.499 4.499 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.086 3.914 15 C 0.451 3.549 16 N -0.516 5.516 17 C 0.210 3.790 18 C -0.109 4.109 19 C -0.057 4.057 20 C -0.151 4.151 21 C -0.006 4.006 22 C -0.713 4.713 23 S 2.671 3.329 24 O -0.934 6.934 25 O -0.942 6.942 26 N -1.061 6.061 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.009 0.991 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -2.182 -14.456 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.208 4.208 3 C -0.043 4.043 4 N -0.228 5.228 5 C 0.064 3.936 6 C -0.538 4.538 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.046 4.046 15 C 0.181 3.819 16 N -0.234 5.234 17 C 0.104 3.896 18 C -0.129 4.129 19 C -0.075 4.075 20 C -0.171 4.171 21 C -0.026 4.026 22 C -0.806 4.806 23 S 2.763 3.237 24 O -0.923 6.923 25 O -0.932 6.932 26 N -0.817 5.817 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 11.807 -1.900 -14.837 19.056 hybrid contribution -0.285 -0.013 0.455 0.537 sum 11.522 -1.913 -14.381 18.527 Atomic orbital electron populations 1.23697 0.96038 1.01113 1.00609 1.23661 0.96916 0.99980 1.00245 1.21465 0.94465 0.93796 0.94576 1.62254 1.15053 1.40855 1.04649 1.19855 0.92236 0.97689 0.83857 1.21091 1.24242 0.98024 1.10399 0.91781 1.24942 0.96864 0.96539 0.96140 1.69950 1.37761 1.30431 1.15794 0.86548 0.79988 0.84014 0.77156 1.20826 1.21428 1.19812 1.21325 0.94270 0.96348 0.92671 1.22891 0.83606 0.80173 0.95239 1.66922 1.33290 1.14260 1.08965 1.18139 0.88028 0.94069 0.89367 1.21164 1.00571 0.94811 0.96315 1.21342 0.93233 0.99533 0.93426 1.21300 1.00789 0.93682 1.01318 1.20334 0.93876 0.96569 0.91784 1.30784 1.13065 1.24574 1.12149 1.02807 0.74160 0.74244 0.72477 1.93709 1.60388 1.65349 1.72834 1.93651 1.31194 1.83431 1.84930 1.54405 1.46075 1.51835 1.29369 0.88424 0.89783 0.88869 0.89710 0.89785 0.97333 0.95821 0.93043 0.91198 0.87641 0.83664 0.84768 0.84925 0.84947 0.72308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 29.01 0.42 -2.68 16 2 C -0.19 -3.36 7.46 -36.03 -0.27 -3.63 16 3 C 0.08 1.59 5.26 -4.97 -0.03 1.56 16 4 N -0.51 -9.87 4.31 -238.96 -1.03 -10.90 16 5 C 0.19 4.49 4.60 -4.98 -0.02 4.46 16 6 C -0.50 -13.28 8.50 -34.44 -0.29 -13.57 16 7 H 0.06 1.72 7.68 -52.48 -0.40 1.32 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 10 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.09 1.31 5.30 -4.98 -0.03 1.29 16 15 C 0.45 6.35 7.18 -154.84 -1.11 5.23 16 16 N -0.52 -7.99 6.61 -8.26 -0.05 -8.05 16 17 C 0.21 2.99 6.61 -84.72 -0.56 2.43 16 18 C -0.11 -1.35 10.00 -39.13 -0.39 -1.74 16 19 C -0.06 -0.55 10.00 -39.66 -0.40 -0.95 16 20 C -0.15 -1.42 10.07 -39.39 -0.40 -1.82 16 21 C -0.01 -0.06 9.74 -39.85 -0.39 -0.45 16 22 C -0.71 -9.36 5.91 -39.36 -0.23 -9.60 16 23 S 2.67 33.80 5.98 -107.50 -0.64 33.15 16 24 O -0.93 -14.36 18.06 -57.07 -1.03 -15.39 16 25 O -0.94 -12.89 17.99 -57.07 -1.03 -13.92 16 26 N -1.06 -11.76 6.02 32.77 0.20 -11.56 16 27 H 0.10 1.75 7.84 -52.49 -0.41 1.34 16 28 H 0.08 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.09 1.54 6.74 -52.49 -0.35 1.19 16 30 H 0.08 1.74 7.01 -51.93 -0.36 1.38 16 31 H 0.08 1.49 5.62 -51.93 -0.29 1.20 16 32 H 0.01 0.23 6.77 -51.93 -0.35 -0.13 16 33 H 0.02 0.59 7.81 -51.93 -0.41 0.19 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.07 1.00 6.26 -51.93 -0.32 0.68 16 36 H 0.11 1.43 7.86 -51.93 -0.41 1.03 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.44 3.25 8.96 -37.43 -0.34 2.91 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -33.90 354.69 -11.22 -45.12 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.90 Total: 3.11 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -3.80 Total: -18.02 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.15 Total: -55.50 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -2.06 Total: -29.31 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.64 Total: 33.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.90 -11.22 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428835121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.421 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds