Wall clock time and date at job start Tue Mar 31 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99703 * 2 1 4 4 N 1.46905 * 109.47034 * 124.10752 * 3 2 1 5 5 C 1.46900 * 110.99590 * 298.45967 * 4 3 2 6 6 C 1.50699 * 109.47446 * 287.94607 * 5 4 3 7 7 H 1.08004 * 119.99690 * 354.68920 * 6 5 4 8 8 C 1.37874 * 120.00216 * 174.68502 * 6 5 4 9 9 N 1.31513 * 119.99692 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46826 * 90.00345 * 10 8 6 12 12 H 1.48502 * 109.47118 * 209.99648 * 10 8 6 13 13 H 1.48494 * 109.47341 * 330.00105 * 10 8 6 14 14 C 1.46901 * 110.99944 * 62.41436 * 4 3 2 15 15 C 1.50697 * 109.47207 * 66.04805 * 14 4 3 16 16 N 1.28504 * 118.13149 * 359.97438 * 15 14 4 17 17 C 1.36186 * 127.55863 * 182.66382 * 16 15 14 18 18 C 1.39773 * 120.49621 * 193.27686 * 17 16 15 19 19 C 1.37894 * 119.90495 * 178.93050 * 18 17 16 20 20 C 1.38362 * 120.65617 * 359.97438 * 19 18 17 21 21 C 1.38637 * 119.98709 * 0.24545 * 20 19 18 22 22 C 1.37094 * 119.62511 * 359.94601 * 21 20 19 23 23 S 1.76945 * 121.48295 * 179.21744 * 22 21 20 24 24 O 1.42097 * 106.99693 * 270.22635 * 23 22 21 25 25 O 1.42103 * 106.99093 * 44.73303 * 23 22 21 26 26 N 1.37409 * 118.13384 * 180.02562 * 15 14 4 27 27 H 1.07997 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99388 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00334 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47023 * 4.10649 * 3 2 1 31 31 H 1.09003 * 109.47054 * 244.10345 * 3 2 1 32 32 H 1.09001 * 109.47127 * 47.95135 * 5 4 3 33 33 H 1.09006 * 109.46701 * 167.94932 * 5 4 3 34 34 H 0.97007 * 120.00025 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.47012 * 306.04307 * 14 4 3 36 36 H 1.08999 * 109.46540 * 186.04694 * 14 4 3 37 37 H 1.07999 * 120.04300 * 358.91631 * 18 17 16 38 38 H 1.08004 * 119.66551 * 180.02562 * 19 18 17 39 39 H 1.08008 * 120.00265 * 180.24622 * 20 19 18 40 40 H 1.08008 * 120.19344 * 179.97438 * 21 20 19 41 41 H 0.97001 * 121.77493 * 329.93690 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3409 1.1468 5 6 2.2427 1.2581 2.4142 6 6 1.5189 2.5569 2.6597 7 1 1.6669 3.3923 1.9914 8 6 0.6677 2.6787 3.7375 9 7 0.4879 1.6615 4.5515 10 14 -0.2300 4.2884 4.0415 11 1 -1.5337 4.2698 3.3307 12 1 -0.4630 4.4578 5.4983 13 1 0.5928 5.4170 3.5372 14 6 3.9847 0.2727 1.0514 15 6 4.8808 0.5296 -0.1327 16 7 4.6576 1.5751 -0.8458 17 6 5.3097 1.9633 -1.9766 18 6 5.1415 3.2546 -2.4845 19 6 5.8248 3.6420 -3.6179 20 6 6.6793 2.7642 -4.2611 21 6 6.8512 1.4793 -3.7697 22 6 6.1716 1.0871 -2.6455 23 16 6.3385 -0.5471 -1.9879 24 8 5.3437 -1.3488 -2.6100 25 8 7.7247 -0.8594 -1.9984 26 7 5.8892 -0.3679 -0.3889 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0736 31 1 2.6338 1.3954 -0.9245 32 1 1.5201 0.4438 2.3612 33 1 2.9413 1.0716 3.2299 34 1 -0.1112 1.7470 5.3097 35 1 3.4833 -0.6869 0.9262 36 1 4.5829 0.2539 1.9624 37 1 4.4771 3.9478 -1.9901 38 1 5.6922 4.6408 -4.0068 39 1 7.2123 3.0800 -5.1458 40 1 7.5171 0.7912 -4.2694 41 1 6.3183 -0.8706 0.3212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428835121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:13 Heat of formation + Delta-G solvation = 4.158311 kcal Electronic energy + Delta-G solvation = -26931.444851 eV Core-core repulsion = 23132.091212 eV Total energy + Delta-G solvation = -3799.353640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29697 -39.61902 -38.66106 -38.04480 -37.35015 -34.77104 -34.64734 -33.69736 -32.38409 -31.15206 -29.36547 -28.12868 -26.05254 -24.82112 -23.84503 -22.86864 -21.84023 -20.50893 -20.41598 -20.03527 -18.92382 -18.25806 -18.05016 -17.29763 -16.89276 -16.48142 -16.38021 -16.12055 -15.85028 -15.55043 -15.28794 -15.20678 -14.86038 -14.26045 -14.07964 -13.95931 -13.67370 -13.58986 -13.52471 -13.34901 -13.07287 -12.86206 -12.78302 -12.55869 -12.49151 -12.30884 -12.07597 -11.96938 -11.76937 -11.59772 -11.28529 -10.79196 -10.51067 -10.50108 -10.08832 -9.21096 -8.86716 -8.09913 -6.16452 -1.15170 -0.68164 0.00041 1.20162 1.32119 1.44914 1.45984 1.50009 1.56714 2.05148 2.46898 2.56778 2.71880 3.18203 3.23913 3.41246 3.54183 3.73126 3.96426 4.06492 4.13099 4.18025 4.24499 4.37828 4.45067 4.54734 4.62889 4.76356 4.86679 4.99995 5.05109 5.14940 5.27403 5.32438 5.34195 5.46447 5.60506 5.75890 5.77078 5.77822 5.95324 6.18376 6.45375 6.65016 6.98000 6.99661 7.51761 8.99857 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.003565 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.512223 B = 7852.381243 C = 8591.360283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.197 4.197 3 C 0.092 3.908 4 N -0.513 5.513 5 C 0.204 3.796 6 C -0.509 4.509 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.955 3.045 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.084 3.916 15 C 0.448 3.552 16 N -0.539 5.539 17 C 0.177 3.823 18 C -0.125 4.125 19 C -0.050 4.050 20 C -0.140 4.140 21 C -0.020 4.020 22 C -0.725 4.725 23 S 2.692 3.308 24 O -0.964 6.964 25 O -0.953 6.953 26 N -1.046 6.046 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.095 0.905 32 H -0.012 1.012 33 H 0.009 0.991 34 H 0.261 0.739 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.026 -1.380 -16.129 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.036 4.036 4 N -0.235 5.235 5 C 0.079 3.921 6 C -0.548 4.548 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.573 5.573 10 Si 0.781 3.219 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.193 1.193 14 C -0.048 4.048 15 C 0.177 3.823 16 N -0.257 5.257 17 C 0.072 3.928 18 C -0.145 4.145 19 C -0.068 4.068 20 C -0.159 4.159 21 C -0.040 4.040 22 C -0.818 4.818 23 S 2.785 3.215 24 O -0.953 6.953 25 O -0.942 6.942 26 N -0.805 5.805 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.006 0.994 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.173 0.827 41 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 12.976 -1.114 -16.521 21.037 hybrid contribution -0.557 -0.201 0.854 1.040 sum 12.418 -1.315 -15.667 20.035 Atomic orbital electron populations 1.23842 0.96138 1.01663 1.00137 1.23736 0.97170 1.00092 1.00643 1.21341 0.94119 0.93477 0.94660 1.62056 1.15157 1.43255 1.03041 1.19480 0.91477 0.95702 0.85488 1.21386 1.24389 0.98880 1.10096 0.92568 1.25682 0.97716 0.99554 0.96011 1.70056 1.38612 1.32246 1.16343 0.85594 0.78890 0.80386 0.77007 1.20298 1.21113 1.19284 1.21384 0.93655 0.95504 0.94259 1.22427 0.84272 0.80807 0.94818 1.66781 1.34260 1.14923 1.09761 1.18324 0.89555 0.95240 0.89685 1.21377 1.01282 0.94295 0.97527 1.21774 0.91873 1.01141 0.92011 1.21813 0.99703 0.92591 1.01789 1.20831 0.93851 0.98020 0.91266 1.30768 1.13746 1.24114 1.13207 1.02018 0.73325 0.73885 0.72237 1.93672 1.61227 1.66684 1.73705 1.93632 1.31596 1.83842 1.85175 1.54086 1.45408 1.51492 1.29514 0.89420 0.87758 0.87346 0.92263 0.88716 0.99423 0.97328 0.93022 0.90014 0.86161 0.84120 0.81303 0.81014 0.82738 0.70458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.33 14.32 67.78 0.97 -5.35 16 2 C -0.20 -7.05 7.46 25.64 0.19 -6.86 16 3 C 0.09 3.51 5.26 85.56 0.45 3.96 16 4 N -0.51 -20.36 4.31 -909.93 -3.92 -24.28 16 5 C 0.20 9.98 4.60 85.56 0.39 10.37 16 6 C -0.51 -27.62 8.50 25.60 0.22 -27.40 16 7 H 0.06 3.08 7.68 -2.91 -0.02 3.05 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 10 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.08 2.54 5.30 85.56 0.45 3.00 16 15 C 0.45 12.48 7.18 137.92 0.99 13.47 16 16 N -0.54 -16.70 6.61 -180.04 -1.19 -17.89 16 17 C 0.18 4.96 6.61 39.25 0.26 5.22 16 18 C -0.12 -2.98 10.00 22.56 0.23 -2.75 16 19 C -0.05 -0.82 10.00 22.22 0.22 -0.60 16 20 C -0.14 -2.11 10.07 22.39 0.23 -1.89 16 21 C -0.02 -0.39 9.74 22.10 0.22 -0.18 16 22 C -0.73 -18.22 5.91 22.41 0.13 -18.09 16 23 S 2.69 66.06 5.98 -56.49 -0.34 65.72 16 24 O -0.96 -29.25 18.06 -128.10 -2.31 -31.57 16 25 O -0.95 -24.96 17.99 -128.10 -2.30 -27.27 16 26 N -1.05 -22.51 6.02 -50.22 -0.30 -22.81 16 27 H 0.09 3.22 7.84 -2.91 -0.02 3.20 16 28 H 0.10 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.11 3.53 6.74 -2.91 -0.02 3.51 16 30 H 0.06 2.53 7.01 -2.39 -0.02 2.51 16 31 H 0.10 3.42 5.62 -2.39 -0.01 3.41 16 32 H -0.01 -0.63 6.77 -2.39 -0.02 -0.65 16 33 H 0.01 0.44 7.81 -2.38 -0.02 0.43 16 34 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 35 H 0.08 2.30 6.26 -2.39 -0.01 2.28 16 36 H 0.12 3.23 7.86 -2.39 -0.02 3.21 16 37 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.45 6.30 8.96 -94.86 -0.85 5.45 16 Total: -1.00 -73.40 354.69 -2.43 -75.83 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.22 Total: 16.50 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 5.41 Total: -26.17 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.13 Total: -118.71 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -4.62 Total: -58.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 66.06 SS G_CDS: -0.34 Total: 65.72 kcal Total: -73.40 -2.43 -75.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428835121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.984 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds