Wall clock time and date at job start Tue Mar 31 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00078 * 2 1 3 5 5 C 1.34952 * 126.03805 * 275.30594 * 4 2 1 6 6 C 1.35311 * 107.74233 * 180.15122 * 5 4 2 7 7 S 1.76198 * 126.03771 * 179.87775 * 6 5 4 8 8 O 1.42097 * 106.40474 * 150.48756 * 7 6 5 9 9 O 1.42105 * 106.40375 * 17.56689 * 7 6 5 10 10 N 1.65602 * 107.21828 * 264.03130 * 7 6 5 11 11 C 1.39681 * 120.00053 * 62.84454 * 10 7 6 12 12 C 1.39336 * 119.94895 * 254.06870 * 11 10 7 13 13 C 1.38483 * 120.42126 * 180.02562 * 12 11 10 14 14 C 1.37685 * 120.32705 * 359.97438 * 13 12 11 15 15 C 1.40750 * 119.89219 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20785 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99712 * 205.19265 * 16 15 14 18 18 C 1.39926 * 120.00074 * 25.19191 * 16 15 14 19 19 N 1.30835 * 119.99812 * 14.90177 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 194.90531 * 18 16 15 21 21 H 1.48494 * 109.47451 * 89.99809 * 20 18 16 22 22 H 1.48503 * 109.47092 * 210.00018 * 20 18 16 23 23 H 1.48503 * 109.47103 * 329.99544 * 20 18 16 24 24 C 1.38274 * 119.95404 * 74.07315 * 11 10 7 25 25 C 1.39868 * 107.92599 * 359.60953 * 6 5 4 26 26 N 1.30838 * 108.20127 * 0.24729 * 25 6 5 27 27 H 1.09002 * 109.47225 * 299.99455 * 1 2 3 28 28 H 1.09001 * 109.47209 * 59.99900 * 1 2 3 29 29 H 1.09006 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47013 * 240.00034 * 2 1 3 31 31 H 1.09001 * 109.46643 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47251 * 300.00074 * 3 2 1 33 33 H 1.09002 * 109.46717 * 60.00234 * 3 2 1 34 34 H 1.07993 * 126.12463 * 0.02562 * 5 4 2 35 35 H 0.97006 * 119.99674 * 242.84771 * 10 7 6 36 36 H 1.07993 * 119.79062 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.83683 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.05655 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99404 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.16204 * 0.27417 * 24 11 10 41 41 H 1.07998 * 125.90345 * 180.26516 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1878 -0.1407 2.4168 6 6 2.6562 -1.1053 3.2422 7 16 3.0480 -0.9089 4.9488 8 8 2.8234 -2.1719 5.5600 9 8 2.4052 0.2852 5.3733 10 7 4.6763 -0.6241 5.0483 11 6 5.2226 0.5191 4.4603 12 6 5.9590 0.4113 3.2824 13 6 6.5055 1.5382 2.6914 14 6 6.3262 2.7785 3.2617 15 6 5.5847 2.9030 4.4515 16 6 5.3960 4.1737 5.0427 17 1 5.2066 4.2532 6.1031 18 6 5.4547 5.3280 4.2540 19 7 5.3909 5.2336 2.9506 20 14 5.6242 7.0037 5.0619 21 1 7.0634 7.3357 5.2158 22 1 4.9672 8.0307 4.2141 23 1 4.9767 6.9768 6.3981 24 6 5.0318 1.7561 5.0481 25 6 2.7687 -2.2872 2.5028 26 7 2.3866 -2.0398 1.2761 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9875 0.8858 2.6861 35 1 5.2507 -1.2513 5.5149 36 1 6.1047 -0.5572 2.8274 37 1 7.0750 1.4437 1.7787 38 1 6.7540 3.6546 2.7969 39 1 5.4312 6.0338 2.4039 40 1 4.4650 1.8403 5.9635 41 1 3.1113 -3.2396 2.8794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451106537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:55 Heat of formation + Delta-G solvation = 16.518332 kcal Electronic energy + Delta-G solvation = -27021.984106 eV Core-core repulsion = 23223.166437 eV Total energy + Delta-G solvation = -3798.817669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26325 -37.96473 -36.66516 -35.90375 -35.36678 -34.67730 -32.92078 -30.45124 -30.06915 -29.91420 -27.69910 -27.52083 -25.32979 -23.52261 -21.66875 -21.11038 -20.82073 -20.10158 -19.04488 -17.99071 -17.57580 -17.00417 -15.72634 -15.55732 -15.42880 -15.15872 -14.92842 -14.70491 -14.36833 -14.17374 -13.65398 -13.14357 -13.09302 -12.98494 -12.56008 -12.40887 -12.36551 -12.08992 -11.77264 -11.67785 -11.60574 -11.60072 -11.51235 -11.29200 -11.20666 -11.15132 -10.73186 -10.47939 -10.44628 -10.06142 -9.86565 -9.50460 -9.30321 -9.12252 -8.96975 -7.59079 -7.37272 -6.81259 -4.43769 0.90063 1.74045 2.36947 2.43854 2.67686 2.80487 3.05027 3.09197 3.14972 3.61971 3.90277 4.20124 4.27915 4.52536 4.60098 4.64409 4.80691 4.89313 5.05262 5.27595 5.29904 5.50682 5.53636 5.55143 5.65876 5.71676 5.83929 6.00708 6.12202 6.26633 6.35581 6.47463 6.88752 6.90592 6.93929 7.04513 7.19267 7.30868 7.53032 7.61749 7.75673 7.93905 7.98959 8.21807 8.55669 8.82097 8.85581 10.13229 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004545 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.393713 B = 6159.017434 C = 7412.326082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 C -0.171 4.171 4 N -0.355 5.355 5 C 0.195 3.805 6 C -0.808 4.808 7 S 2.721 3.279 8 O -0.977 6.977 9 O -0.954 6.954 10 N -1.057 6.057 11 C 0.135 3.865 12 C -0.228 4.228 13 C -0.104 4.104 14 C -0.155 4.155 15 C 0.111 3.889 16 C -0.456 4.456 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.200 4.200 25 C 0.130 3.870 26 N -0.299 5.299 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.190 0.810 35 H 0.413 0.587 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.280 0.720 40 H 0.106 0.894 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -6.658 -5.963 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 C -0.229 4.229 4 N -0.133 5.133 5 C 0.042 3.958 6 C -0.907 4.907 7 S 2.810 3.190 8 O -0.967 6.967 9 O -0.944 6.944 10 N -0.811 5.811 11 C 0.043 3.957 12 C -0.251 4.251 13 C -0.123 4.123 14 C -0.174 4.174 15 C 0.107 3.893 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.223 4.223 25 C -0.059 4.059 26 N -0.118 5.118 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.207 0.793 35 H 0.249 0.751 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.164 -6.893 -6.934 11.558 hybrid contribution 0.660 0.797 0.392 1.106 sum -5.505 -6.097 -6.542 10.501 Atomic orbital electron populations 1.22267 0.93379 1.03257 1.03535 1.21459 0.94947 0.93392 0.85503 1.22273 1.03328 0.93119 1.04190 1.49364 1.48046 1.07521 1.08402 1.22433 0.90490 0.99007 0.83912 1.31519 1.30400 1.00869 1.27892 1.01070 0.72254 0.72980 0.72667 1.93525 1.84592 1.43553 1.75075 1.93590 1.73618 1.47522 1.79632 1.52858 1.27067 1.32226 1.68982 1.16938 1.00506 0.84388 0.93916 1.20508 1.08698 0.97248 0.98612 1.20574 1.00093 0.93155 0.98519 1.21495 1.01302 0.95939 0.98714 1.17506 0.88379 0.92023 0.91348 1.19609 1.42643 0.90121 0.96221 0.90201 1.25883 0.92139 1.01542 0.94612 1.69797 1.35729 1.31524 1.05335 0.86278 0.79367 0.80608 0.80308 1.19314 1.20353 1.18516 1.21344 1.06280 0.91826 1.02822 1.23403 0.95242 0.97542 0.89745 1.77307 1.21259 0.92997 1.20194 0.91542 0.90156 0.91650 0.87679 0.90629 0.89701 0.90895 0.79263 0.75067 0.89166 0.89174 0.85923 0.90932 0.87543 0.79044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.52 37.16 0.35 -1.13 16 2 C 0.15 1.61 3.93 -67.93 -0.27 1.34 16 3 C -0.17 -1.80 8.84 37.16 0.33 -1.48 16 4 N -0.36 -5.12 3.52 -54.87 -0.19 -5.32 16 5 C 0.19 3.09 10.29 -17.22 -0.18 2.91 16 6 C -0.81 -13.23 6.06 -40.02 -0.24 -13.47 16 7 S 2.72 47.62 5.85 -107.50 -0.63 46.99 16 8 O -0.98 -17.81 17.92 -57.17 -1.02 -18.84 16 9 O -0.95 -19.61 16.77 -57.17 -0.96 -20.57 16 10 N -1.06 -18.26 5.69 32.37 0.18 -18.08 16 11 C 0.14 2.80 5.79 -83.86 -0.49 2.32 16 12 C -0.23 -4.68 9.97 -39.08 -0.39 -5.07 16 13 C -0.10 -2.25 10.01 -39.69 -0.40 -2.65 16 14 C -0.15 -3.73 8.69 -38.83 -0.34 -4.06 16 15 C 0.11 2.78 5.57 -106.85 -0.60 2.19 16 16 C -0.46 -11.60 9.06 -37.74 -0.34 -11.94 16 17 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 18 C 0.08 1.80 5.20 -17.34 -0.09 1.71 16 19 N -0.80 -19.38 10.83 55.55 0.60 -18.77 16 20 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.20 -4.71 9.00 -38.68 -0.35 -5.06 16 25 C 0.13 1.97 11.87 -17.37 -0.21 1.76 16 26 N -0.30 -4.65 12.58 30.62 0.39 -4.26 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16 34 H 0.19 2.86 7.27 -52.49 -0.38 2.48 16 35 H 0.41 5.94 8.96 -34.47 -0.31 5.64 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 38 H 0.12 3.06 6.09 -52.49 -0.32 2.74 16 39 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 40 H 0.11 2.52 7.86 -52.49 -0.41 2.11 16 41 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.90 364.40 -9.52 -40.41 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.15 Total: 12.57 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: -3.20 Total: -32.62 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.98 Total: -46.43 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.98 Total: -39.41 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.63 Total: 46.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.90 -9.52 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451106537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.931 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds