Wall clock time and date at job start Tue Mar 31 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00078 * 2 1 3 5 5 C 1.34952 * 126.03805 * 275.30594 * 4 2 1 6 6 C 1.35311 * 107.74233 * 180.15122 * 5 4 2 7 7 S 1.76198 * 126.03771 * 179.87775 * 6 5 4 8 8 O 1.42097 * 106.40474 * 150.48756 * 7 6 5 9 9 O 1.42105 * 106.40375 * 17.56689 * 7 6 5 10 10 N 1.65602 * 107.21828 * 264.03130 * 7 6 5 11 11 C 1.39681 * 120.00053 * 62.84454 * 10 7 6 12 12 C 1.39336 * 119.94895 * 254.06870 * 11 10 7 13 13 C 1.38483 * 120.42126 * 180.02562 * 12 11 10 14 14 C 1.37685 * 120.32705 * 359.97438 * 13 12 11 15 15 C 1.40750 * 119.89219 * 0.02562 * 14 13 12 16 16 C 1.41411 * 120.20785 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99712 * 205.19265 * 16 15 14 18 18 C 1.39926 * 120.00074 * 25.19191 * 16 15 14 19 19 N 1.30835 * 119.99812 * 14.90177 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 194.90531 * 18 16 15 21 21 H 1.48494 * 109.47451 * 89.99809 * 20 18 16 22 22 H 1.48503 * 109.47092 * 210.00018 * 20 18 16 23 23 H 1.48503 * 109.47103 * 329.99544 * 20 18 16 24 24 C 1.38274 * 119.95404 * 74.07315 * 11 10 7 25 25 C 1.39868 * 107.92599 * 359.60953 * 6 5 4 26 26 N 1.30838 * 108.20127 * 0.24729 * 25 6 5 27 27 H 1.09002 * 109.47225 * 299.99455 * 1 2 3 28 28 H 1.09001 * 109.47209 * 59.99900 * 1 2 3 29 29 H 1.09006 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47013 * 240.00034 * 2 1 3 31 31 H 1.09001 * 109.46643 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47251 * 300.00074 * 3 2 1 33 33 H 1.09002 * 109.46717 * 60.00234 * 3 2 1 34 34 H 1.07993 * 126.12463 * 0.02562 * 5 4 2 35 35 H 0.97006 * 119.99674 * 242.84771 * 10 7 6 36 36 H 1.07993 * 119.79062 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.83683 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.05655 * 180.02562 * 14 13 12 39 39 H 0.97005 * 119.99404 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.16204 * 0.27417 * 24 11 10 41 41 H 1.07998 * 125.90345 * 180.26516 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1878 -0.1407 2.4168 6 6 2.6562 -1.1053 3.2422 7 16 3.0480 -0.9089 4.9488 8 8 2.8234 -2.1719 5.5600 9 8 2.4052 0.2852 5.3733 10 7 4.6763 -0.6241 5.0483 11 6 5.2226 0.5191 4.4603 12 6 5.9590 0.4113 3.2824 13 6 6.5055 1.5382 2.6914 14 6 6.3262 2.7785 3.2617 15 6 5.5847 2.9030 4.4515 16 6 5.3960 4.1737 5.0427 17 1 5.2066 4.2532 6.1031 18 6 5.4547 5.3280 4.2540 19 7 5.3909 5.2336 2.9506 20 14 5.6242 7.0037 5.0619 21 1 7.0634 7.3357 5.2158 22 1 4.9672 8.0307 4.2141 23 1 4.9767 6.9768 6.3981 24 6 5.0318 1.7561 5.0481 25 6 2.7687 -2.2872 2.5028 26 7 2.3866 -2.0398 1.2761 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9875 0.8858 2.6861 35 1 5.2507 -1.2513 5.5149 36 1 6.1047 -0.5572 2.8274 37 1 7.0750 1.4437 1.7787 38 1 6.7540 3.6546 2.7969 39 1 5.4312 6.0338 2.4039 40 1 4.4650 1.8403 5.9635 41 1 3.1113 -3.2396 2.8794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451106537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:54 Heat of formation + Delta-G solvation = -3.298591 kcal Electronic energy + Delta-G solvation = -27022.843433 eV Core-core repulsion = 23223.166437 eV Total energy + Delta-G solvation = -3799.676995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42486 -39.69577 -38.17048 -36.88580 -36.83373 -36.36945 -34.63385 -31.75065 -31.61274 -31.15730 -29.41541 -28.31222 -27.15691 -24.59074 -22.88218 -22.81630 -22.59302 -21.17266 -20.45938 -19.54634 -18.99232 -18.45260 -17.46585 -16.87865 -16.74734 -16.45503 -16.38784 -16.03462 -15.84249 -15.39754 -15.13893 -14.73484 -14.19727 -14.11770 -14.00508 -13.73562 -13.33998 -13.28882 -13.21256 -13.18833 -13.08763 -12.99489 -12.96193 -12.81412 -12.47446 -12.41021 -12.15686 -12.12823 -11.80897 -11.78106 -11.55652 -11.05207 -10.66924 -10.64779 -10.28660 -9.39402 -9.13753 -8.59748 -6.32889 -0.53385 0.51227 0.96015 1.02448 1.22137 1.33305 1.42318 1.53165 1.54557 2.19876 2.25467 2.73088 2.83106 3.17310 3.51924 3.69490 3.72602 3.81030 3.92156 4.00149 4.30606 4.41204 4.49302 4.54772 4.64153 4.64703 4.67750 4.72341 4.79072 5.09362 5.10531 5.11896 5.14396 5.27577 5.33486 5.40140 5.67218 5.78411 5.98755 6.01617 6.13422 6.18142 6.35911 6.46848 6.72420 6.97436 7.02067 8.36714 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004545 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.393713 B = 6159.017434 C = 7412.326082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 C -0.168 4.168 4 N -0.349 5.349 5 C 0.183 3.817 6 C -0.818 4.818 7 S 2.740 3.260 8 O -0.982 6.982 9 O -0.989 6.989 10 N -1.051 6.051 11 C 0.151 3.849 12 C -0.218 4.218 13 C -0.101 4.101 14 C -0.174 4.174 15 C 0.086 3.914 16 C -0.497 4.497 17 H 0.071 0.929 18 C 0.040 3.960 19 N -0.822 5.822 20 Si 0.977 3.023 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.264 1.264 24 C -0.222 4.222 25 C 0.129 3.871 26 N -0.310 5.310 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.189 0.811 35 H 0.428 0.572 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.288 0.712 40 H 0.094 0.906 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -7.406 -7.415 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 C -0.226 4.226 4 N -0.127 5.127 5 C 0.028 3.972 6 C -0.920 4.920 7 S 2.831 3.169 8 O -0.972 6.972 9 O -0.979 6.979 10 N -0.807 5.807 11 C 0.057 3.943 12 C -0.240 4.240 13 C -0.120 4.120 14 C -0.194 4.194 15 C 0.083 3.917 16 C -0.526 4.526 17 H 0.089 0.911 18 C -0.175 4.175 19 N -0.448 5.448 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.244 4.244 25 C -0.060 4.060 26 N -0.128 5.128 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.206 0.794 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.258 -7.667 -8.377 12.966 hybrid contribution 0.648 0.896 0.754 1.338 sum -5.610 -6.771 -7.624 11.638 Atomic orbital electron populations 1.22250 0.91642 1.03265 1.04668 1.21831 0.96298 0.93220 0.84623 1.22272 1.01888 0.93255 1.05154 1.49708 1.46972 1.07258 1.08756 1.22517 0.90840 0.99106 0.84737 1.31270 1.31771 1.01905 1.27015 1.00250 0.71702 0.72040 0.72899 1.93514 1.84550 1.43408 1.75716 1.93552 1.74401 1.49106 1.80819 1.52702 1.27300 1.31541 1.69165 1.16853 0.99444 0.84391 0.93607 1.20787 1.07177 0.98116 0.97902 1.20843 0.99654 0.92431 0.99088 1.21433 1.02291 0.96651 0.98979 1.17780 0.89081 0.92609 0.92214 1.19809 1.45127 0.91503 0.96199 0.91125 1.26603 0.91274 1.04569 0.95065 1.69829 1.35800 1.32883 1.06295 0.85271 0.79513 0.76226 0.79139 1.18613 1.19157 1.18812 1.21365 1.07152 0.92925 1.02990 1.23874 0.94700 0.98122 0.89315 1.77281 1.21523 0.93557 1.20447 0.92229 0.87226 0.92144 0.86372 0.92757 0.86730 0.91981 0.79399 0.73259 0.86370 0.86631 0.87305 0.90122 0.88820 0.76377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.52 71.98 0.69 -1.84 16 2 C 0.14 2.79 3.93 44.99 0.18 2.96 16 3 C -0.17 -3.33 8.84 71.98 0.64 -2.70 16 4 N -0.35 -9.59 3.52 -327.50 -1.15 -10.75 16 5 C 0.18 5.70 10.29 83.54 0.86 6.56 16 6 C -0.82 -25.87 6.06 21.99 0.13 -25.74 16 7 S 2.74 94.25 5.85 -56.49 -0.33 93.92 16 8 O -0.98 -34.51 17.92 -128.00 -2.29 -36.81 16 9 O -0.99 -41.37 16.77 -128.00 -2.15 -43.52 16 10 N -1.05 -35.24 5.69 -51.49 -0.29 -35.53 16 11 C 0.15 6.16 5.79 38.16 0.22 6.38 16 12 C -0.22 -8.53 9.97 22.59 0.23 -8.31 16 13 C -0.10 -4.26 10.01 22.20 0.22 -4.04 16 14 C -0.17 -8.51 8.69 22.75 0.20 -8.31 16 15 C 0.09 4.48 5.57 -21.31 -0.12 4.36 16 16 C -0.50 -26.31 9.06 23.46 0.21 -26.10 16 17 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 18 C 0.04 1.94 5.20 85.25 0.44 2.38 16 19 N -0.82 -40.62 10.83 21.82 0.24 -40.38 16 20 Si 0.98 37.37 29.58 68.60 2.03 39.40 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.22 -10.71 9.00 22.85 0.21 -10.51 16 25 C 0.13 3.63 11.87 85.24 1.01 4.65 16 26 N -0.31 -9.00 12.58 -57.03 -0.72 -9.72 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.36 7.16 -2.39 -0.02 1.35 16 34 H 0.19 5.80 7.27 -2.91 -0.02 5.78 16 35 H 0.43 11.62 8.96 -96.74 -0.87 10.75 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.11 5.58 6.09 -2.91 -0.02 5.56 16 39 H 0.29 12.82 8.30 -92.70 -0.77 12.05 16 40 H 0.09 4.66 7.86 -2.91 -0.02 4.63 16 41 H 0.22 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -66.95 364.40 0.64 -66.31 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.20 Total: 37.31 kcal Atomic # 6 Polarization: -65.36 SS G_CDS: 5.11 Total: -60.25 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -1.93 Total: -96.38 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: -4.44 Total: -80.32 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 94.25 SS G_CDS: -0.33 Total: 93.92 kcal Total: -66.95 0.64 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451106537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.015 kcal (2) G-P(sol) polarization free energy of solvation -66.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds