Wall clock time and date at job start Tue Mar 31 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47389 * 2 1 4 4 N 1.46507 * 109.47009 * 119.99793 * 2 1 3 5 5 C 1.35044 * 126.39666 * 300.02766 * 4 2 1 6 6 N 1.30500 * 108.69743 * 179.97438 * 5 4 2 7 7 C 1.34119 * 109.25788 * 0.02562 * 6 5 4 8 8 S 1.76196 * 125.99101 * 180.02562 * 7 6 5 9 9 O 1.42101 * 106.40667 * 84.55114 * 8 7 6 10 10 O 1.42104 * 106.40438 * 217.47692 * 8 7 6 11 11 N 1.65597 * 107.21747 * 331.01212 * 8 7 6 12 12 C 1.39690 * 120.00117 * 297.82489 * 11 8 7 13 13 C 1.39332 * 119.95006 * 313.72562 * 12 11 8 14 14 C 1.38473 * 120.42038 * 179.72221 * 13 12 11 15 15 C 1.37688 * 120.32802 * 0.55275 * 14 13 12 16 16 C 1.40748 * 119.89231 * 359.72396 * 15 14 13 17 17 C 1.41408 * 120.21025 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99988 * 28.45100 * 17 16 15 19 19 C 1.39935 * 119.99954 * 208.45487 * 17 16 15 20 20 N 1.30829 * 119.99753 * 12.15442 * 19 17 16 21 21 Si 1.86794 * 119.99962 * 192.15065 * 19 17 16 22 22 H 1.48506 * 109.47274 * 60.00011 * 21 19 17 23 23 H 1.48497 * 109.47237 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47334 * 300.00310 * 21 19 17 25 25 C 1.38279 * 119.94924 * 133.99772 * 12 11 8 26 26 C 1.34676 * 108.02257 * 359.72751 * 7 6 5 27 27 H 1.09004 * 109.46840 * 59.99753 * 1 2 3 28 28 H 1.08996 * 109.47039 * 300.00499 * 1 2 3 29 29 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47542 * 239.99659 * 2 1 3 31 31 H 1.08999 * 109.46703 * 59.99740 * 3 2 1 32 32 H 1.08991 * 109.47214 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47213 * 299.99998 * 3 2 1 34 34 H 1.08001 * 125.64915 * 0.02839 * 5 4 2 35 35 H 0.97007 * 120.00144 * 117.82442 * 11 8 7 36 36 H 1.08003 * 119.78915 * 359.97438 * 13 12 11 37 37 H 1.08001 * 119.83764 * 180.27705 * 14 13 12 38 38 H 1.07999 * 120.05576 * 179.75187 * 15 14 13 39 39 H 0.96999 * 119.99551 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.16376 * 359.97438 * 25 12 11 41 41 H 1.07998 * 126.59224 * 180.29006 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7726 -0.3439 2.4781 6 7 2.3737 -1.1947 3.2642 7 6 3.0186 -2.1052 2.5199 8 16 3.9720 -3.4549 3.1314 9 8 3.0552 -4.5092 3.3905 10 8 5.0841 -3.5893 2.2570 11 7 4.5848 -2.9966 4.6000 12 6 5.4565 -1.9083 4.6843 13 6 6.5139 -1.7928 3.7844 14 6 7.3805 -0.7151 3.8554 15 6 7.2132 0.2489 4.8242 16 6 6.1529 0.1426 5.7438 17 6 5.9745 1.1291 6.7411 18 1 6.3002 2.1432 6.5620 19 6 5.3759 0.7914 7.9600 20 7 5.1982 -0.4658 8.2754 21 14 4.8306 2.1357 9.1368 22 1 3.8234 2.9992 8.4696 23 1 4.2311 1.5201 10.3479 24 1 6.0045 2.9566 9.5288 25 6 5.2720 -0.9503 5.6642 26 6 2.8042 -1.8110 1.2233 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.1765 0.4974 2.7994 35 1 4.3383 -3.4838 5.4018 36 1 6.6562 -2.5465 3.0240 37 1 8.1944 -0.6326 3.1503 38 1 7.8940 1.0855 4.8781 39 1 4.7829 -0.6998 9.1202 40 1 4.4551 -1.0410 6.3648 41 1 3.1815 -2.3536 0.3691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451117968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:04 Heat of formation + Delta-G solvation = 3.838676 kcal Electronic energy + Delta-G solvation = -26825.900229 eV Core-core repulsion = 23026.532729 eV Total energy + Delta-G solvation = -3799.367500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18973 -37.86828 -36.68068 -36.31961 -35.48033 -34.41962 -33.06459 -31.14898 -29.63670 -29.47182 -27.77500 -27.75662 -25.18687 -23.45082 -22.35377 -21.06562 -20.83664 -20.55714 -18.79989 -17.73803 -17.29029 -17.00605 -16.19103 -15.85798 -15.58029 -14.98629 -14.77905 -14.60070 -14.46389 -14.27582 -14.03003 -13.45851 -13.33694 -12.84394 -12.81147 -12.72777 -12.42521 -12.05031 -11.89639 -11.75652 -11.69755 -11.66337 -11.49111 -11.23650 -11.08884 -11.05203 -10.80752 -10.38450 -10.03093 -9.84666 -9.81234 -9.70004 -9.19304 -9.11495 -8.84099 -7.31077 -7.08401 -6.63370 -4.33073 0.87904 1.73134 2.52912 2.81855 2.86125 3.03223 3.10376 3.12711 3.26102 3.35541 3.98352 4.03706 4.14393 4.42299 4.50093 4.61341 4.67935 4.75144 5.04174 5.07395 5.16175 5.24984 5.28505 5.34985 5.54996 5.66561 5.70261 6.03202 6.14117 6.29994 6.43775 6.74817 6.88199 7.02733 7.11836 7.17144 7.31054 7.43527 7.79702 7.87106 7.96174 8.07434 8.12435 8.35340 8.68048 8.94788 8.99442 10.28561 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.004430 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.391091 B = 6319.123641 C = 7472.327769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.123 3.877 3 C -0.166 4.166 4 N -0.449 5.449 5 C 0.187 3.813 6 N -0.404 5.404 7 C -0.541 4.541 8 S 2.728 3.272 9 O -0.971 6.971 10 O -0.954 6.954 11 N -1.036 6.036 12 C 0.146 3.854 13 C -0.259 4.259 14 C -0.085 4.085 15 C -0.226 4.226 16 C 0.117 3.883 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.801 5.801 21 Si 0.909 3.091 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.145 4.145 26 C 0.058 3.942 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.209 0.791 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.280 0.720 40 H 0.127 0.873 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 1.668 -14.155 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 C -0.223 4.223 4 N -0.131 5.131 5 C -0.099 4.099 6 N -0.120 5.120 7 C -0.753 4.753 8 S 2.815 3.185 9 O -0.961 6.961 10 O -0.943 6.943 11 N -0.789 5.789 12 C 0.052 3.948 13 C -0.281 4.281 14 C -0.104 4.104 15 C -0.246 4.246 16 C 0.113 3.887 17 C -0.495 4.495 18 H 0.094 0.906 19 C -0.141 4.141 20 N -0.427 5.427 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.169 4.169 26 C -0.082 4.082 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.256 0.744 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.523 0.875 -13.803 16.792 hybrid contribution -0.686 1.224 0.131 1.409 sum -10.210 2.099 -13.671 17.192 Atomic orbital electron populations 1.22197 0.92869 1.03443 1.03673 1.21603 0.95724 0.94460 0.86219 1.22199 1.02768 0.93730 1.03624 1.46019 1.37447 1.21378 1.08238 1.25137 1.03746 1.02188 0.78783 1.70407 1.08058 1.02153 1.31346 1.33318 1.21337 1.21615 0.99018 1.01101 0.72796 0.71986 0.72650 1.93560 1.65199 1.52674 1.84671 1.93562 1.49839 1.85242 1.65703 1.52572 1.58067 1.42634 1.25672 1.17218 0.90494 0.87557 0.99510 1.20992 0.98992 1.02914 1.05247 1.20381 0.97704 0.94672 0.97644 1.21088 1.00785 1.01234 1.01504 1.17450 0.88749 0.91777 0.90685 1.19478 1.35097 0.96783 0.98097 0.90622 1.25842 0.93428 0.96014 0.98809 1.69774 1.32784 1.17708 1.22406 0.86366 0.79700 0.81402 0.79152 1.19038 1.20408 1.19177 1.21334 1.01036 0.94937 0.99573 1.22462 0.96651 0.90550 0.98576 0.90216 0.91315 0.91564 0.87881 0.91243 0.91209 0.90254 0.77476 0.74390 0.85986 0.88960 0.88965 0.90934 0.85572 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.24 37.16 0.34 -0.61 16 2 C 0.12 0.91 3.59 -67.92 -0.24 0.67 16 3 C -0.17 -1.13 9.24 37.16 0.34 -0.79 16 4 N -0.45 -5.38 2.62 -111.45 -0.29 -5.68 16 5 C 0.19 2.65 11.55 -90.37 -1.04 1.60 16 6 N -0.40 -7.44 11.25 -13.86 -0.16 -7.60 16 7 C -0.54 -9.66 6.95 -17.81 -0.12 -9.78 16 8 S 2.73 51.55 5.77 -107.50 -0.62 50.93 16 9 O -0.97 -19.54 18.02 -57.17 -1.03 -20.57 16 10 O -0.95 -19.01 15.05 -57.17 -0.86 -19.87 16 11 N -1.04 -21.10 5.76 32.38 0.19 -20.92 16 12 C 0.15 3.44 6.13 -83.86 -0.51 2.93 16 13 C -0.26 -6.07 9.22 -39.09 -0.36 -6.43 16 14 C -0.09 -1.96 10.01 -39.70 -0.40 -2.36 16 15 C -0.23 -5.57 9.79 -38.83 -0.38 -5.95 16 16 C 0.12 3.10 5.55 -106.85 -0.59 2.51 16 17 C -0.46 -12.27 9.06 -37.74 -0.34 -12.61 16 18 H 0.08 1.92 7.87 -52.48 -0.41 1.50 16 19 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 20 N -0.80 -20.68 10.90 55.55 0.61 -20.07 16 21 Si 0.91 18.81 29.58 -169.99 -5.03 13.78 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.15 -3.76 8.57 -38.68 -0.33 -4.09 16 26 C 0.06 0.83 11.41 -16.56 -0.19 0.64 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.41 7.95 -51.93 -0.41 -0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.21 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.42 7.76 8.96 -34.47 -0.31 7.45 16 36 H 0.12 2.76 5.68 -52.48 -0.30 2.46 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.13 3.39 6.25 -52.49 -0.33 3.06 16 41 H 0.19 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -34.08 361.65 -10.78 -44.85 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.11 Total: 12.15 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -3.92 Total: -32.47 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.34 Total: -54.26 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.89 Total: -40.44 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.62 Total: 50.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.08 -10.78 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451117968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.693 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds