Wall clock time and date at job start Tue Mar 31 2020 18:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.50700 * 109.47320 * 239.99872 * 2 1 3 5 5 H 1.08004 * 120.00273 * 240.00423 * 4 2 1 6 6 C 1.37882 * 119.99964 * 59.99968 * 4 2 1 7 7 N 1.31517 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99784 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47158 * 60.00341 * 8 6 4 10 10 H 1.48501 * 109.46836 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47057 * 299.99542 * 8 6 4 12 12 C 1.53009 * 109.46943 * 119.99950 * 2 1 3 13 13 N 1.46494 * 109.47288 * 300.00151 * 12 2 1 14 14 C 1.34773 * 120.00383 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99784 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.46781 * 179.97438 * 16 14 13 18 18 C 1.35798 * 119.81108 * 269.97437 * 17 16 14 19 19 N 1.29990 * 121.86016 * 179.47138 * 18 17 16 20 20 C 1.35025 * 121.70418 * 0.87165 * 19 18 17 21 21 S 1.75871 * 130.82100 * 179.10270 * 20 19 18 22 22 C 1.75344 * 92.15792 * 179.97438 * 21 20 19 23 23 C 1.32031 * 111.25446 * 359.97438 * 22 21 20 24 24 C 1.39199 * 119.55545 * 359.39106 * 20 19 18 25 25 C 1.34741 * 119.81621 * 90.00349 * 17 16 14 26 26 O 1.21895 * 120.64900 * 359.97438 * 25 17 16 27 27 H 1.09002 * 109.47574 * 300.00053 * 1 2 3 28 28 H 1.08999 * 109.47025 * 60.00046 * 1 2 3 29 29 H 1.09005 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47034 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47105 * 299.99905 * 3 2 1 32 32 H 1.09005 * 109.46808 * 60.00059 * 3 2 1 33 33 H 0.96991 * 119.99620 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46920 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.46727 * 60.00403 * 12 2 1 36 36 H 0.97005 * 119.99667 * 0.02562 * 13 12 2 37 37 H 1.09000 * 109.47038 * 59.99974 * 16 14 13 38 38 H 1.08996 * 109.46985 * 299.99871 * 16 14 13 39 39 H 1.07992 * 119.06702 * 0.02562 * 18 17 16 40 40 H 1.07998 * 124.37379 * 179.97438 * 22 21 20 41 41 H 1.08002 * 122.59670 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4909 3.6696 15 8 2.5748 -1.4769 3.7809 16 6 1.3756 0.2199 4.9000 17 7 1.8639 -0.4708 6.0962 18 6 1.1263 -1.4687 6.6479 19 7 1.5260 -2.1147 7.7026 20 6 2.6901 -1.8169 8.3184 21 16 3.4437 -2.5083 9.7492 22 6 4.8201 -1.4289 9.6271 23 6 4.7049 -0.6220 8.5884 24 6 3.4955 -0.8015 7.8104 25 6 3.0419 -0.1121 6.6430 26 8 3.7080 0.7829 6.1520 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7090 1.1613 -3.4844 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2492 36 1 0.9936 0.7577 2.3564 37 1 0.2856 0.2199 4.9003 38 1 1.7390 1.2475 4.8996 39 1 0.1852 -1.7390 6.1923 40 1 5.6544 -1.4247 10.3129 41 1 5.4512 0.1185 8.3414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:35 Heat of formation + Delta-G solvation = -31.218479 kcal Electronic energy + Delta-G solvation = -26035.416828 eV Core-core repulsion = 22234.529136 eV Total energy + Delta-G solvation = -3800.887692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.90495 -40.71126 -38.83758 -38.30003 -37.60718 -35.13375 -35.06880 -32.83949 -30.70483 -29.91932 -27.54595 -27.43851 -26.77586 -25.79443 -24.95905 -22.54887 -21.67303 -20.64469 -20.23965 -19.03360 -18.85331 -18.05829 -17.76474 -17.16814 -16.91907 -16.55821 -16.50400 -16.15632 -15.92221 -15.05209 -14.97874 -14.84588 -14.72200 -14.68556 -14.46128 -14.00991 -13.85204 -13.42524 -13.39345 -13.12417 -13.08476 -12.67113 -12.64327 -12.24539 -12.23412 -12.14448 -11.68310 -11.48447 -11.48050 -11.29008 -11.14155 -10.82005 -10.68232 -10.40180 -10.02350 -9.66984 -9.18981 -8.03292 -6.18658 -0.82934 0.08661 0.48730 0.81741 1.07371 1.19777 1.42511 1.44439 1.50408 1.51513 2.15187 2.43113 2.53714 3.07959 3.20446 3.35851 3.59500 3.70994 3.85286 3.98243 4.10077 4.22118 4.41700 4.49604 4.59699 4.72003 4.88376 4.98092 5.06664 5.07026 5.07897 5.11993 5.20934 5.33165 5.34282 5.55666 5.66904 5.69089 6.16905 6.22937 6.43580 6.46305 6.52860 6.60415 6.85285 7.19699 7.48998 8.95125 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.002252 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.320221 B =12428.778210 C =12486.503080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.124 4.124 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.941 3.059 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.150 3.850 13 N -0.700 5.700 14 C 0.491 3.509 15 O -0.589 6.589 16 C 0.079 3.921 17 N -0.516 5.516 18 C 0.402 3.598 19 N -0.522 5.522 20 C 0.062 3.938 21 S 0.230 5.770 22 C -0.212 4.212 23 C -0.092 4.092 24 C -0.269 4.269 25 C 0.549 3.451 26 O -0.563 6.563 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.011 0.989 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.028 0.972 35 H 0.044 0.956 36 H 0.415 0.585 37 H 0.194 0.806 38 H 0.137 0.863 39 H 0.261 0.739 40 H 0.212 0.788 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 -1.382 24.945 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.768 3.232 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.026 3.974 13 N -0.352 5.352 14 C 0.277 3.723 15 O -0.470 6.470 16 C -0.046 4.046 17 N -0.234 5.234 18 C 0.114 3.886 19 N -0.244 5.244 20 C -0.170 4.170 21 S 0.492 5.508 22 C -0.346 4.346 23 C -0.121 4.121 24 C -0.287 4.287 25 C 0.346 3.654 26 O -0.443 6.443 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.211 0.789 38 H 0.155 0.845 39 H 0.277 0.723 40 H 0.229 0.771 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.921 -3.156 26.060 26.413 hybrid contribution 1.412 1.549 -2.851 3.538 sum -1.509 -1.607 23.209 23.314 Atomic orbital electron populations 1.21667 0.96406 0.98975 1.00805 1.18351 0.93756 0.92724 0.90013 1.21707 0.97635 0.98124 1.00679 1.21252 1.31795 1.12187 0.91767 0.94063 1.25406 0.95162 0.95590 1.00814 1.69883 1.36854 1.23101 1.23677 0.85880 0.78471 0.78977 0.79850 1.20142 1.20715 1.20667 1.21254 0.96558 0.95363 0.84214 1.45984 1.52434 1.31943 1.04821 1.21345 0.80395 0.84620 0.85980 1.90729 1.39923 1.28968 1.87336 1.22138 1.05255 0.98045 0.79193 1.46222 1.19306 1.32390 1.25487 1.26012 0.96064 0.79801 0.86694 1.67976 1.15371 1.29022 1.11991 1.24439 0.94738 0.96814 1.01053 1.83894 1.11974 1.35612 1.19282 1.25604 1.04461 1.00909 1.03646 1.20601 0.95719 1.01351 0.94401 1.21024 1.01339 1.04601 1.01686 1.17012 0.80733 0.83497 0.84179 1.90880 1.55459 1.32912 1.65061 0.93528 0.92067 0.95990 0.96958 0.91812 0.93965 0.92983 0.95362 0.93740 0.74692 0.78911 0.84534 0.72308 0.77082 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 8.08 71.98 0.58 -4.35 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -27.69 8.01 25.60 0.21 -27.48 16 5 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 6 C 0.03 1.58 5.15 84.66 0.44 2.01 16 7 N -0.90 -46.86 9.35 21.45 0.20 -46.66 16 8 Si 0.94 42.29 29.54 68.60 2.03 44.31 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 C 0.15 6.08 4.50 86.38 0.39 6.47 16 13 N -0.70 -21.09 4.96 -463.06 -2.30 -23.39 16 14 C 0.49 14.43 7.90 87.66 0.69 15.12 16 15 O -0.59 -23.51 16.43 -3.03 -0.05 -23.56 16 16 C 0.08 1.41 5.84 85.63 0.50 1.91 16 17 N -0.52 -11.70 2.08 -657.16 -1.36 -13.07 16 18 C 0.40 7.04 11.48 180.17 2.07 9.11 16 19 N -0.52 -11.46 10.42 -193.76 -2.02 -13.47 16 20 C 0.06 1.49 7.70 84.43 0.65 2.14 16 21 S 0.23 3.79 23.24 -56.49 -1.31 2.48 16 22 C -0.21 -3.27 11.04 66.89 0.74 -2.53 16 23 C -0.09 -2.07 10.31 23.06 0.24 -1.84 16 24 C -0.27 -7.42 6.08 -20.15 -0.12 -7.54 16 25 C 0.55 16.88 7.50 85.43 0.64 17.52 16 26 O -0.56 -21.03 16.68 -4.97 -0.08 -21.12 16 27 H 0.05 1.49 6.86 -2.39 -0.02 1.47 16 28 H 0.06 2.85 6.07 -2.39 -0.01 2.84 16 29 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 32 H 0.04 1.48 6.86 -2.38 -0.02 1.46 16 33 H 0.26 13.19 8.31 -92.71 -0.77 12.41 16 34 H 0.03 1.28 8.14 -2.38 -0.02 1.27 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 9.98 6.16 -92.70 -0.57 9.41 16 37 H 0.19 0.89 8.01 -2.39 -0.02 0.87 16 38 H 0.14 2.43 7.43 -2.39 -0.02 2.41 16 39 H 0.26 1.51 8.02 -2.91 -0.02 1.49 16 40 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -77.87 356.41 3.18 -74.69 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.51 Total: 11.73 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 7.57 Total: 8.05 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -5.48 Total: -96.59 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.13 Total: -44.68 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -77.87 3.18 -74.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.470 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds