Wall clock time and date at job start Tue Mar 31 2020 18:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31031 * 122.31051 * 2 1 4 4 S 1.75594 * 109.49737 * 179.97438 * 3 2 1 5 5 C 1.71459 * 91.30287 * 359.76447 * 4 3 2 6 6 N 1.33676 * 128.65874 * 179.97438 * 5 4 3 7 7 C 1.31620 * 122.37558 * 180.02562 * 6 5 4 8 8 C 1.39973 * 119.28769 * 359.97438 * 7 6 5 9 9 C 1.46745 * 120.85982 * 180.02562 * 8 7 6 10 10 O 1.21693 * 120.00017 * 354.31652 * 9 8 7 11 11 N 1.34773 * 120.00155 * 174.31472 * 9 8 7 12 12 C 1.46504 * 119.99926 * 184.65324 * 11 9 8 13 13 C 1.53000 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46957 * 300.00124 * 13 12 11 15 15 C 1.52996 * 109.47148 * 59.99532 * 13 12 11 16 16 C 1.50692 * 109.47387 * 180.02562 * 13 12 11 17 17 H 1.08006 * 120.00099 * 1.00076 * 16 13 12 18 18 C 1.37885 * 120.00142 * 181.00634 * 16 13 12 19 19 N 1.31509 * 119.99896 * 192.47722 * 18 16 13 20 20 Si 1.86797 * 119.99795 * 12.47872 * 18 16 13 21 21 H 1.48503 * 109.47419 * 84.66737 * 20 18 16 22 22 H 1.48507 * 109.46862 * 204.66697 * 20 18 16 23 23 H 1.48503 * 109.47008 * 324.66545 * 20 18 16 24 24 C 1.41281 * 118.28217 * 0.02562 * 8 7 6 25 25 O 1.21882 * 120.30096 * 180.02562 * 24 8 7 26 26 N 1.35130 * 109.94441 * 359.97438 * 5 4 3 27 27 H 1.09005 * 109.47219 * 270.48110 * 1 2 3 28 28 H 1.09003 * 109.47112 * 30.47584 * 1 2 3 29 29 H 1.08997 * 109.47444 * 150.48049 * 1 2 3 30 30 H 1.07998 * 125.25570 * 359.77524 * 3 2 1 31 31 H 1.08001 * 120.35549 * 179.97438 * 7 6 5 32 32 H 0.97002 * 120.00174 * 4.65066 * 11 9 8 33 33 H 1.09005 * 109.47259 * 299.99857 * 12 11 9 34 34 H 1.08998 * 109.47175 * 60.00120 * 12 11 9 35 35 H 1.09001 * 109.47394 * 68.80960 * 14 13 12 36 36 H 1.09000 * 109.47059 * 188.81453 * 14 13 12 37 37 H 1.09003 * 109.46886 * 308.81113 * 14 13 12 38 38 H 1.09001 * 109.47323 * 60.00379 * 15 13 12 39 39 H 1.09002 * 109.47662 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.47768 * 300.00506 * 15 13 12 41 41 H 0.97006 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1074 0.0000 4 16 3.9196 0.7180 0.0007 5 6 3.5774 -0.9621 0.0081 6 7 4.4336 -1.9886 0.0115 7 6 4.0314 -3.2418 0.0166 8 6 2.6598 -3.5208 0.0191 9 6 2.1732 -4.9052 0.0253 10 8 2.9607 -5.8274 -0.0759 11 7 0.8541 -5.1553 0.1433 12 6 0.3774 -6.5363 0.2521 13 6 -1.1478 -6.5413 0.3733 14 6 -1.5629 -5.7586 1.6207 15 6 -1.7600 -5.8866 -0.8666 16 6 -1.6382 -7.9617 0.4859 17 1 -0.9315 -8.7785 0.4886 18 6 -2.9892 -8.2189 0.5852 19 7 -3.4069 -9.4180 0.9274 20 14 -4.2261 -6.8640 0.2336 21 1 -4.4841 -6.7960 -1.2272 22 1 -5.4955 -7.1551 0.9475 23 1 -3.6822 -5.5637 0.7013 24 6 1.7559 -2.4350 0.0154 25 8 0.5537 -2.6356 0.0179 26 7 2.2407 -1.1603 0.0102 27 1 -0.3634 0.0086 1.0277 28 1 -0.3633 0.8857 -0.5212 29 1 -0.3634 -0.8942 -0.5063 30 1 1.7952 2.1057 -0.0035 31 1 4.7520 -4.0463 0.0188 32 1 0.2204 -4.4210 0.1561 33 1 0.6726 -7.0938 -0.6368 34 1 0.8138 -7.0029 1.1352 35 1 -1.3482 -4.7001 1.4737 36 1 -2.6306 -5.8921 1.7948 37 1 -1.0055 -6.1261 2.4824 38 1 -1.4644 -6.4441 -1.7554 39 1 -2.8466 -5.8897 -0.7802 40 1 -1.4053 -4.8590 -0.9477 41 1 -4.3574 -9.5990 0.9970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:23 Heat of formation + Delta-G solvation = 27.461195 kcal Electronic energy + Delta-G solvation = -27000.515326 eV Core-core repulsion = 23202.172175 eV Total energy + Delta-G solvation = -3798.343151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.00539 -39.54619 -38.19240 -37.72154 -36.49604 -33.07921 -32.84621 -31.57251 -31.15041 -29.23352 -26.80481 -26.25118 -25.46424 -24.78025 -24.46498 -22.11611 -20.40517 -19.65457 -19.08750 -18.79492 -17.74504 -17.37279 -16.82511 -16.00856 -15.69909 -15.36692 -14.88877 -14.78631 -14.62729 -14.25079 -14.04331 -13.88843 -13.73231 -13.58921 -13.23861 -13.05257 -12.81594 -12.51135 -12.30092 -12.08681 -11.95562 -11.91536 -11.19722 -10.81871 -10.79608 -10.47746 -10.24539 -10.21016 -10.03098 -9.93226 -9.85818 -9.57107 -8.99435 -8.58565 -8.43277 -8.35267 -8.05574 -6.07004 -4.03969 -0.53334 0.01914 0.70014 0.77167 1.40538 1.58994 2.66196 3.30949 3.39414 3.43975 3.53894 3.63229 3.69123 3.92333 4.27797 4.42930 4.43388 4.54181 4.80937 4.97081 5.07740 5.24428 5.27658 5.49985 5.54120 5.69243 5.91367 5.94283 6.17949 6.21612 6.53147 6.61916 6.69546 6.74308 6.82806 6.94179 7.01921 7.13060 7.21808 7.33220 7.54269 7.81345 8.21769 8.53522 8.79609 8.98289 9.57356 11.06168 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.003291 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.102660 B = 8507.127057 C = 9665.668515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.106 3.894 3 C -0.259 4.259 4 S 0.277 5.723 5 C 0.276 3.724 6 N -0.521 5.521 7 C 0.259 3.741 8 C -0.329 4.329 9 C 0.575 3.425 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.140 3.860 13 C 0.029 3.971 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.509 4.509 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.881 3.119 21 H -0.286 1.286 22 H -0.306 1.306 23 H -0.245 1.245 24 C 0.541 3.459 25 O -0.502 6.502 26 N -0.451 5.451 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.205 0.795 31 H 0.195 0.805 32 H 0.411 0.589 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.032 0.968 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 28.326 -1.905 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.003 4.003 3 C -0.396 4.396 4 S 0.531 5.469 5 C -0.086 4.086 6 N -0.248 5.248 7 C 0.105 3.895 8 C -0.345 4.345 9 C 0.360 3.640 10 O -0.438 6.438 11 N -0.367 5.367 12 C 0.017 3.983 13 C 0.028 3.972 14 C -0.202 4.202 15 C -0.202 4.202 16 C -0.547 4.547 17 H 0.095 0.905 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.714 3.286 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.171 1.171 24 C 0.344 3.656 25 O -0.379 6.379 26 N -0.160 5.160 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.222 0.778 31 H 0.212 0.788 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.937 28.280 -1.913 32.039 hybrid contribution -3.049 -0.039 -0.223 3.057 sum 11.888 28.241 -2.136 30.715 Atomic orbital electron populations 1.21032 0.84632 1.06080 1.05078 1.19902 0.97654 0.83253 0.99475 1.25144 0.96532 1.03013 1.14896 1.84317 1.02465 0.86163 1.73974 1.25992 0.82211 1.04816 0.95624 1.68331 1.31282 0.98410 1.26815 1.23344 0.93998 0.91871 0.80314 1.21629 0.94214 0.94506 1.24137 1.17029 0.83413 0.85977 0.77561 1.90782 1.55824 1.44687 1.52484 1.46767 1.06957 1.11802 1.71198 1.21517 0.95447 0.80080 1.01224 1.18704 0.90274 0.96740 0.91528 1.22340 1.01720 0.96902 0.99206 1.22297 0.99465 0.98351 1.00131 1.20760 0.92927 0.89945 1.51107 0.90490 1.24960 0.98333 0.95333 0.94118 1.69945 1.15169 1.21527 1.46516 0.87375 0.79675 0.83775 0.77751 1.21398 1.23433 1.17126 1.17442 0.89868 0.79917 0.78399 1.90672 1.14983 1.81274 1.50953 1.45273 1.07040 1.09433 1.54261 0.89037 0.89241 0.87612 0.77835 0.78811 0.74442 0.91954 0.91965 0.95672 0.92425 0.93586 0.92935 0.94266 0.94871 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.43 36.00 0.34 -0.43 16 2 C 0.11 0.82 6.62 -81.88 -0.54 0.27 16 3 C -0.26 -1.12 10.85 29.01 0.31 -0.80 16 4 S 0.28 1.40 23.15 -107.50 -2.49 -1.09 16 5 C 0.28 2.69 8.07 -87.58 -0.71 1.98 16 6 N -0.52 -5.82 10.39 -13.57 -0.14 -5.96 16 7 C 0.26 3.25 10.85 -16.99 -0.18 3.07 16 8 C -0.33 -5.07 5.91 -104.65 -0.62 -5.68 16 9 C 0.57 11.00 7.73 -12.83 -0.10 10.90 16 10 O -0.56 -11.84 16.43 5.20 0.09 -11.75 16 11 N -0.71 -14.27 4.92 -61.59 -0.30 -14.57 16 12 C 0.14 3.14 4.50 -4.04 -0.02 3.13 16 13 C 0.03 0.69 0.50 -155.66 -0.08 0.61 16 14 C -0.14 -3.28 7.52 37.16 0.28 -3.00 16 15 C -0.15 -3.30 7.59 37.16 0.28 -3.02 16 16 C -0.51 -14.42 8.62 -34.44 -0.30 -14.72 16 17 H 0.08 2.36 7.99 -52.48 -0.42 1.94 16 18 C 0.07 2.16 5.34 -17.82 -0.10 2.07 16 19 N -0.89 -27.60 13.96 55.43 0.77 -26.82 16 20 Si 0.88 22.08 22.76 -169.99 -3.87 18.21 16 21 H -0.29 -7.13 7.07 56.52 0.40 -6.73 16 22 H -0.31 -7.74 7.11 56.52 0.40 -7.33 16 23 H -0.25 -5.70 4.60 56.52 0.26 -5.44 16 24 C 0.54 7.81 7.54 -14.37 -0.11 7.70 16 25 O -0.50 -8.12 11.46 5.03 0.06 -8.06 16 26 N -0.45 -4.91 2.82 -62.88 -0.18 -5.09 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.35 8.11 -51.93 -0.42 -0.07 16 29 H 0.11 1.07 5.95 -51.93 -0.31 0.76 16 30 H 0.20 0.13 8.06 -52.49 -0.42 -0.30 16 31 H 0.20 2.14 7.72 -52.49 -0.41 1.73 16 32 H 0.41 8.07 2.88 -40.82 -0.12 7.96 16 33 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.02 0.51 7.11 -51.93 -0.37 0.14 16 36 H 0.06 1.35 4.07 -51.93 -0.21 1.14 16 37 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.92 2.38 -51.93 -0.12 0.79 16 40 H 0.03 0.68 6.86 -51.93 -0.36 0.32 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -35.09 335.88 -7.08 -42.17 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.55 Total: 5.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.53 Total: 2.07 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.15 Total: -52.44 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.14 Total: -19.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -3.87 Total: 18.21 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.09 -7.08 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.627 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds