Wall clock time and date at job start Tue Mar 31 2020 18:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31031 * 122.31051 * 2 1 4 4 S 1.75594 * 109.49737 * 179.97438 * 3 2 1 5 5 C 1.71459 * 91.30287 * 359.76447 * 4 3 2 6 6 N 1.33676 * 128.65874 * 179.97438 * 5 4 3 7 7 C 1.31620 * 122.37558 * 180.02562 * 6 5 4 8 8 C 1.39973 * 119.28769 * 359.97438 * 7 6 5 9 9 C 1.46745 * 120.85982 * 180.02562 * 8 7 6 10 10 O 1.21693 * 120.00017 * 354.31652 * 9 8 7 11 11 N 1.34773 * 120.00155 * 174.31472 * 9 8 7 12 12 C 1.46504 * 119.99926 * 184.65324 * 11 9 8 13 13 C 1.53000 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46957 * 300.00124 * 13 12 11 15 15 C 1.52996 * 109.47148 * 59.99532 * 13 12 11 16 16 C 1.50692 * 109.47387 * 180.02562 * 13 12 11 17 17 H 1.08006 * 120.00099 * 1.00076 * 16 13 12 18 18 C 1.37885 * 120.00142 * 181.00634 * 16 13 12 19 19 N 1.31509 * 119.99896 * 192.47722 * 18 16 13 20 20 Si 1.86797 * 119.99795 * 12.47872 * 18 16 13 21 21 H 1.48503 * 109.47419 * 84.66737 * 20 18 16 22 22 H 1.48507 * 109.46862 * 204.66697 * 20 18 16 23 23 H 1.48503 * 109.47008 * 324.66545 * 20 18 16 24 24 C 1.41281 * 118.28217 * 0.02562 * 8 7 6 25 25 O 1.21882 * 120.30096 * 180.02562 * 24 8 7 26 26 N 1.35130 * 109.94441 * 359.97438 * 5 4 3 27 27 H 1.09005 * 109.47219 * 270.48110 * 1 2 3 28 28 H 1.09003 * 109.47112 * 30.47584 * 1 2 3 29 29 H 1.08997 * 109.47444 * 150.48049 * 1 2 3 30 30 H 1.07998 * 125.25570 * 359.77524 * 3 2 1 31 31 H 1.08001 * 120.35549 * 179.97438 * 7 6 5 32 32 H 0.97002 * 120.00174 * 4.65066 * 11 9 8 33 33 H 1.09005 * 109.47259 * 299.99857 * 12 11 9 34 34 H 1.08998 * 109.47175 * 60.00120 * 12 11 9 35 35 H 1.09001 * 109.47394 * 68.80960 * 14 13 12 36 36 H 1.09000 * 109.47059 * 188.81453 * 14 13 12 37 37 H 1.09003 * 109.46886 * 308.81113 * 14 13 12 38 38 H 1.09001 * 109.47323 * 60.00379 * 15 13 12 39 39 H 1.09002 * 109.47662 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.47768 * 300.00506 * 15 13 12 41 41 H 0.97006 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1074 0.0000 4 16 3.9196 0.7180 0.0007 5 6 3.5774 -0.9621 0.0081 6 7 4.4336 -1.9886 0.0115 7 6 4.0314 -3.2418 0.0166 8 6 2.6598 -3.5208 0.0191 9 6 2.1732 -4.9052 0.0253 10 8 2.9607 -5.8274 -0.0759 11 7 0.8541 -5.1553 0.1433 12 6 0.3774 -6.5363 0.2521 13 6 -1.1478 -6.5413 0.3733 14 6 -1.5629 -5.7586 1.6207 15 6 -1.7600 -5.8866 -0.8666 16 6 -1.6382 -7.9617 0.4859 17 1 -0.9315 -8.7785 0.4886 18 6 -2.9892 -8.2189 0.5852 19 7 -3.4069 -9.4180 0.9274 20 14 -4.2261 -6.8640 0.2336 21 1 -4.4841 -6.7960 -1.2272 22 1 -5.4955 -7.1551 0.9475 23 1 -3.6822 -5.5637 0.7013 24 6 1.7559 -2.4350 0.0154 25 8 0.5537 -2.6356 0.0179 26 7 2.2407 -1.1603 0.0102 27 1 -0.3634 0.0086 1.0277 28 1 -0.3633 0.8857 -0.5212 29 1 -0.3634 -0.8942 -0.5063 30 1 1.7952 2.1057 -0.0035 31 1 4.7520 -4.0463 0.0188 32 1 0.2204 -4.4210 0.1561 33 1 0.6726 -7.0938 -0.6368 34 1 0.8138 -7.0029 1.1352 35 1 -1.3482 -4.7001 1.4737 36 1 -2.6306 -5.8921 1.7948 37 1 -1.0055 -6.1261 2.4824 38 1 -1.4644 -6.4441 -1.7554 39 1 -2.8466 -5.8897 -0.7802 40 1 -1.4053 -4.8590 -0.9477 41 1 -4.3574 -9.5990 0.9970 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:22 Heat of formation + Delta-G solvation = 1.713677 kcal Electronic energy + Delta-G solvation = -27001.631822 eV Core-core repulsion = 23202.172175 eV Total energy + Delta-G solvation = -3799.459647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.81864 -40.89277 -39.21810 -38.78723 -38.13601 -34.91346 -33.54286 -33.42584 -32.29578 -29.87107 -28.14353 -28.00316 -27.15359 -26.41791 -25.43441 -23.09787 -21.61764 -21.00988 -20.27905 -19.80545 -18.82886 -18.19642 -18.15364 -17.84369 -17.11995 -16.66142 -16.39013 -16.28608 -15.40229 -15.24305 -15.13297 -14.96323 -14.90352 -14.68900 -14.53836 -14.41928 -14.30313 -14.06159 -13.85226 -13.77440 -13.12049 -12.93772 -12.43104 -12.40667 -12.22798 -11.97955 -11.82509 -11.80259 -11.39840 -11.29681 -11.14798 -10.94094 -10.66731 -10.65975 -10.44598 -9.96883 -8.89023 -8.32675 -6.34710 -1.36040 -0.59444 0.00910 0.24552 0.61935 0.85346 1.32912 1.34242 1.46544 1.52405 2.31676 2.34734 2.48132 2.81461 2.89976 3.02634 3.68475 3.75457 3.93882 4.02224 4.06176 4.15351 4.26805 4.34893 4.50868 4.61145 4.67636 4.74115 4.76358 4.77978 4.82810 4.87761 4.98071 5.01111 5.10743 5.30279 5.37587 5.52070 5.66400 5.72787 6.15994 6.22046 6.28611 6.67675 6.73608 7.29731 7.32010 8.84391 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.003291 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.102660 B = 8507.127057 C = 9665.668515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.062 3.938 3 C -0.219 4.219 4 S 0.384 5.616 5 C 0.248 3.752 6 N -0.534 5.534 7 C 0.287 3.713 8 C -0.381 4.381 9 C 0.575 3.425 10 O -0.592 6.592 11 N -0.710 5.710 12 C 0.153 3.847 13 C 0.028 3.972 14 C -0.139 4.139 15 C -0.141 4.141 16 C -0.517 4.517 17 H 0.033 0.967 18 C 0.021 3.979 19 N -0.943 5.943 20 Si 0.940 3.060 21 H -0.279 1.279 22 H -0.307 1.307 23 H -0.212 1.212 24 C 0.540 3.460 25 O -0.532 6.532 26 N -0.450 5.450 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.254 0.746 31 H 0.201 0.799 32 H 0.414 0.586 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.137 34.822 -2.243 37.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.355 4.355 4 S 0.639 5.361 5 C -0.111 4.111 6 N -0.262 5.262 7 C 0.128 3.872 8 C -0.397 4.397 9 C 0.364 3.636 10 O -0.476 6.476 11 N -0.370 5.370 12 C 0.029 3.971 13 C 0.027 3.973 14 C -0.196 4.196 15 C -0.198 4.198 16 C -0.555 4.555 17 H 0.051 0.949 18 C -0.177 4.177 19 N -0.582 5.582 20 Si 0.769 3.231 21 H -0.207 1.207 22 H -0.236 1.236 23 H -0.137 1.137 24 C 0.344 3.656 25 O -0.411 6.411 26 N -0.157 5.157 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.270 0.730 31 H 0.217 0.783 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.676 34.919 -2.255 38.342 hybrid contribution -3.000 -1.724 -0.113 3.462 sum 12.676 33.194 -2.368 35.611 Atomic orbital electron populations 1.20998 0.84425 1.06027 1.05033 1.20228 0.98265 0.82930 1.02995 1.25890 0.96239 1.03925 1.09493 1.84249 1.01765 0.81246 1.68791 1.27008 0.81911 1.07081 0.95123 1.68400 1.31385 0.98029 1.28415 1.23408 0.92937 0.92947 0.77956 1.21115 0.95555 0.92666 1.30400 1.17537 0.82522 0.87569 0.76018 1.90735 1.56355 1.46384 1.54094 1.46654 1.07788 1.10320 1.72257 1.21102 0.94679 0.81728 0.99573 1.18633 0.91038 0.94456 0.93162 1.22232 1.01129 0.98081 0.98152 1.22208 0.99114 0.99539 0.98948 1.20988 0.92527 0.91323 1.50635 0.94891 1.25791 1.00345 0.97820 0.93726 1.70085 1.15746 1.24094 1.48313 0.86408 0.76698 0.82143 0.77874 1.20664 1.23579 1.13652 1.17201 0.89212 0.81010 0.78191 1.90617 1.15806 1.82072 1.52584 1.45161 1.07819 1.09365 1.53305 0.89253 0.85722 0.91101 0.72969 0.78276 0.73967 0.93753 0.93778 0.93215 0.92884 0.93960 0.93333 0.94363 0.92445 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.43 71.23 0.67 -0.53 16 2 C 0.06 0.73 6.62 41.63 0.28 1.01 16 3 C -0.22 -0.50 10.85 67.75 0.73 0.24 16 4 S 0.38 1.70 23.15 -56.49 -1.31 0.39 16 5 C 0.25 4.09 8.07 179.29 1.45 5.54 16 6 N -0.53 -11.09 10.39 -196.86 -2.04 -13.14 16 7 C 0.29 7.26 10.85 85.15 0.92 8.18 16 8 C -0.38 -12.10 5.91 -19.89 -0.12 -12.21 16 9 C 0.58 23.18 7.73 86.47 0.67 23.85 16 10 O -0.59 -26.79 16.43 -4.33 -0.07 -26.86 16 11 N -0.71 -29.75 4.92 -467.00 -2.30 -32.05 16 12 C 0.15 7.28 4.50 86.38 0.39 7.67 16 13 C 0.03 1.38 0.50 -52.93 -0.03 1.36 16 14 C -0.14 -6.25 7.52 71.98 0.54 -5.71 16 15 C -0.14 -6.34 7.59 71.98 0.55 -5.79 16 16 C -0.52 -30.65 8.62 25.60 0.22 -30.43 16 17 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 18 C 0.02 1.24 5.34 84.66 0.45 1.70 16 19 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 20 Si 0.94 45.52 22.76 68.60 1.56 47.08 16 21 H -0.28 -13.21 7.07 99.48 0.70 -12.50 16 22 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 23 H -0.21 -9.16 4.60 99.48 0.46 -8.70 16 24 C 0.54 15.59 7.54 84.73 0.64 16.23 16 25 O -0.53 -17.32 11.46 -4.93 -0.06 -17.38 16 26 N -0.45 -8.88 2.82 -470.08 -1.32 -10.20 16 27 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.12 0.43 8.11 -2.39 -0.02 0.41 16 29 H 0.07 1.37 5.95 -2.39 -0.01 1.36 16 30 H 0.25 -1.89 8.06 -2.91 -0.02 -1.91 16 31 H 0.20 4.55 7.72 -2.91 -0.02 4.53 16 32 H 0.41 16.56 2.88 -92.71 -0.27 16.29 16 33 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.99 7.11 -2.39 -0.02 1.97 16 36 H 0.05 2.42 4.07 -2.39 -0.01 2.41 16 37 H 0.04 1.89 8.12 -2.39 -0.02 1.87 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.72 2.38 -2.39 -0.01 1.71 16 40 H 0.06 2.29 6.86 -2.38 -0.02 2.27 16 41 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -83.56 335.88 2.71 -80.85 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.58 Total: 20.42 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.37 Total: 11.09 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -5.37 Total: -115.59 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.13 Total: -44.24 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.56 Total: 47.08 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.39 kcal Total: -83.56 2.71 -80.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.562 kcal (2) G-P(sol) polarization free energy of solvation -83.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds