Wall clock time and date at job start Tue Mar 31 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30953 * 123.07946 * 2 1 4 4 C 1.29352 * 117.49542 * 180.30123 * 3 2 1 5 5 S 1.70911 * 110.65157 * 359.74761 * 4 3 2 6 6 C 1.37075 * 123.07572 * 179.83738 * 2 1 3 7 7 C 1.41719 * 126.18706 * 359.97438 * 6 2 1 8 8 C 1.35570 * 119.99682 * 179.71480 * 7 6 2 9 9 C 1.41542 * 119.99779 * 180.02562 * 8 7 6 10 10 O 1.21781 * 120.00268 * 355.00925 * 9 8 7 11 11 N 1.34784 * 119.99887 * 175.01893 * 9 8 7 12 12 C 1.46966 * 120.59447 * 185.26386 * 11 9 8 13 13 C 1.53367 * 108.63177 * 235.20390 * 12 11 9 14 14 N 1.46964 * 108.63613 * 310.57334 * 13 12 11 15 15 C 1.34774 * 120.59450 * 235.20641 * 14 13 12 16 16 O 1.21690 * 120.00328 * 5.21864 * 15 14 13 17 17 C 1.46375 * 119.99952 * 185.22225 * 15 14 13 18 18 H 1.07994 * 120.00111 * 354.97743 * 17 15 14 19 19 C 1.40053 * 119.99940 * 174.98247 * 17 15 14 20 20 N 1.30669 * 119.99924 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99701 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47081 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47312 * 299.99781 * 21 19 17 24 24 H 1.48500 * 109.47347 * 60.00232 * 21 19 17 25 25 C 1.46958 * 118.81054 * 55.48498 * 14 13 12 26 26 C 1.46958 * 120.59086 * 5.24333 * 11 9 8 27 27 H 1.08999 * 109.47268 * 270.16342 * 1 2 3 28 28 H 1.09000 * 109.46963 * 30.16336 * 1 2 3 29 29 H 1.09000 * 109.47349 * 150.16281 * 1 2 3 30 30 H 1.08001 * 124.67768 * 179.74705 * 4 3 2 31 31 H 1.08000 * 120.00512 * 359.72548 * 7 6 2 32 32 H 1.08001 * 119.99784 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.60626 * 115.45674 * 12 11 9 34 34 H 1.09001 * 109.74964 * 355.03352 * 12 11 9 35 35 H 1.09008 * 109.60405 * 190.83472 * 13 12 11 36 36 H 1.08997 * 109.61382 * 70.32389 * 13 12 11 37 37 H 0.96999 * 119.99545 * 179.97438 * 20 19 17 38 38 H 1.09003 * 109.61170 * 64.26142 * 25 14 13 39 39 H 1.09003 * 109.61151 * 184.77730 * 25 14 13 40 40 H 1.09010 * 109.60830 * 244.54033 * 26 11 9 41 41 H 1.09001 * 109.61575 * 5.04949 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0973 0.0000 4 6 3.5091 0.9714 -0.0060 5 16 3.9534 -0.6789 -0.0057 6 6 2.2551 -1.1486 0.0033 7 6 1.7533 -2.4740 0.0075 8 6 2.6113 -3.5236 0.0046 9 6 2.1101 -4.8473 0.0083 10 8 0.9124 -5.0447 0.1059 11 7 2.9586 -5.8894 -0.0959 12 6 2.4466 -7.2624 -0.2093 13 6 3.0707 -8.1116 0.9049 14 7 4.5244 -7.8952 0.9020 15 6 5.3727 -8.9372 0.7978 16 8 4.9391 -10.0586 0.6097 17 6 6.8159 -8.7202 0.9110 18 1 7.2059 -7.7168 0.9966 19 6 7.6908 -9.8138 0.9081 20 7 7.2188 -11.0279 0.8048 21 14 9.5325 -9.5367 1.0518 22 1 10.2336 -10.8455 1.0249 23 1 9.9978 -8.7020 -0.0850 24 1 9.8304 -8.8423 2.3302 25 6 5.0364 -6.5229 1.0211 26 6 4.4121 -5.6730 -0.0987 27 1 -0.3634 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 4.2071 1.7956 -0.0107 31 1 0.6874 -2.6479 0.0130 32 1 3.6772 -3.3497 -0.0006 33 1 2.7193 -7.6754 -1.1804 34 1 1.3617 -7.2608 -0.1040 35 1 2.8574 -9.1653 0.7248 36 1 2.6581 -7.8117 1.8682 37 1 7.8249 -11.7852 0.8025 38 1 4.7604 -6.1124 1.9925 39 1 6.1215 -6.5270 0.9177 40 1 4.8248 -5.9729 -1.0621 41 1 4.6256 -4.6194 0.0814 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493294647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:06 Heat of formation + Delta-G solvation = 9.112781 kcal Electronic energy + Delta-G solvation = -25682.191512 eV Core-core repulsion = 21883.052715 eV Total energy + Delta-G solvation = -3799.138798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.38131 -40.04151 -38.05628 -35.92375 -34.85087 -33.11860 -32.51661 -31.78581 -30.92609 -28.31136 -27.28150 -26.07020 -25.40147 -23.66826 -22.94414 -21.55172 -19.78358 -19.63703 -18.60833 -17.84315 -17.62063 -16.33965 -16.04526 -15.62393 -15.52068 -15.37186 -15.04998 -14.57902 -14.23680 -14.08134 -14.00553 -13.81056 -13.69822 -13.09417 -13.04353 -12.93949 -12.67956 -12.29262 -11.94811 -11.68272 -11.54128 -11.39317 -11.21051 -11.19709 -11.02927 -10.98089 -10.76939 -10.31049 -10.17855 -10.12793 -9.72654 -9.46804 -8.95499 -8.74499 -8.43758 -7.69046 -7.28260 -6.28180 -4.74478 -0.37401 0.90279 1.29112 1.43728 2.45285 3.09269 3.12741 3.15727 3.16759 3.37900 3.78562 4.00866 4.38741 4.46914 4.47909 4.57685 4.69821 4.74254 5.09434 5.21517 5.23769 5.27760 5.31312 5.43887 5.49325 5.55340 5.60243 5.76129 5.84124 5.92049 5.96554 6.01131 6.06697 6.24727 6.33958 6.50140 6.71957 7.26565 7.35937 7.45872 7.53625 8.00851 8.21924 8.24886 8.92926 9.31244 10.47854 10.66258 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002584 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.346146 B =10831.465590 C =12326.004763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.098 3.902 3 N -0.471 5.471 4 C 0.016 3.984 5 S 0.164 5.836 6 C -0.221 4.221 7 C 0.014 3.986 8 C -0.208 4.208 9 C 0.548 3.452 10 O -0.556 6.556 11 N -0.599 5.599 12 C 0.099 3.901 13 C 0.107 3.893 14 N -0.643 5.643 15 C 0.559 3.441 16 O -0.575 6.575 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.267 1.267 24 H -0.267 1.267 25 C 0.109 3.891 26 C 0.087 3.913 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.202 0.798 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.270 0.730 38 H 0.048 0.952 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 22.742 -2.061 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 N -0.185 5.185 4 C -0.278 4.278 5 S 0.421 5.579 6 C -0.342 4.342 7 C -0.008 4.008 8 C -0.231 4.231 9 C 0.340 3.660 10 O -0.438 6.438 11 N -0.330 5.330 12 C -0.024 4.024 13 C -0.017 4.017 14 N -0.382 5.382 15 C 0.365 3.635 16 O -0.457 6.457 17 C -0.582 4.582 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.394 5.394 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.192 1.192 24 H -0.192 1.192 25 C -0.016 4.016 26 C -0.037 4.037 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.219 0.781 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.677 21.835 -2.129 22.661 hybrid contribution 0.380 0.368 0.109 0.540 sum -5.297 22.203 -2.020 22.915 Atomic orbital electron populations 1.20465 0.86440 1.03919 1.03556 1.21146 0.98265 0.85521 0.99005 1.65922 1.05001 1.31763 1.15767 1.28544 0.95165 1.00662 1.03433 1.84092 1.05923 1.02750 1.65148 1.23717 0.95825 0.98516 1.16170 1.20557 1.00937 0.87821 0.91466 1.22250 1.00364 0.93260 1.07259 1.16886 0.86206 0.85406 0.77458 1.90802 1.15245 1.86334 1.51409 1.48008 1.06868 1.07000 1.71166 1.22090 0.99911 0.80410 1.00018 1.21513 0.83256 1.00791 0.96180 1.48192 1.04147 1.06206 1.79650 1.18284 0.86631 0.82243 0.76316 1.90601 1.78292 1.22858 1.53990 1.20905 0.89484 0.93695 1.54089 0.90929 1.25730 1.00322 0.94613 0.92590 1.69994 1.35993 0.98768 1.34695 0.86440 0.82619 0.78276 0.79491 1.20525 1.19191 1.19226 1.21897 1.00642 0.83442 0.95667 1.22498 0.79478 1.00412 1.01330 0.89938 0.90132 0.90056 0.78130 0.83230 0.85397 0.91216 0.88838 0.88532 0.93460 0.91909 0.93369 0.87536 0.90584 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.04 36.00 0.36 -0.24 16 2 C 0.10 0.93 6.85 -83.39 -0.57 0.36 16 3 N -0.47 -4.59 10.49 -11.23 -0.12 -4.71 16 4 C 0.02 0.12 12.20 51.72 0.63 0.75 16 5 S 0.16 1.24 21.97 -107.50 -2.36 -1.12 16 6 C -0.22 -2.12 6.26 -38.68 -0.24 -2.36 16 7 C 0.01 0.15 8.96 -39.21 -0.35 -0.20 16 8 C -0.21 -2.42 8.71 -39.28 -0.34 -2.77 16 9 C 0.55 8.24 7.45 -15.00 -0.11 8.13 16 10 O -0.56 -9.84 15.54 5.12 0.08 -9.76 16 11 N -0.60 -9.21 2.95 -175.64 -0.52 -9.73 16 12 C 0.10 1.66 6.59 -3.60 -0.02 1.64 16 13 C 0.11 2.09 6.60 -3.60 -0.02 2.07 16 14 N -0.64 -13.98 2.94 -173.88 -0.51 -14.49 16 15 C 0.56 15.25 7.62 -12.99 -0.10 15.15 16 16 O -0.58 -18.05 14.45 5.20 0.08 -17.97 16 17 C -0.55 -14.48 8.87 -35.63 -0.32 -14.79 16 18 H 0.07 1.71 5.66 -52.49 -0.30 1.41 16 19 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 20 N -0.77 -22.26 11.84 55.55 0.66 -21.60 16 21 Si 0.91 19.16 29.56 -169.99 -5.02 14.13 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C 0.11 1.85 6.51 -3.37 -0.02 1.83 16 26 C 0.09 1.20 6.48 -3.37 -0.02 1.18 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.51 7.10 -51.93 -0.37 0.15 16 30 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.15 1.57 6.54 -52.49 -0.34 1.22 16 32 H 0.13 1.26 4.81 -52.49 -0.25 1.01 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.52 7.00 -51.93 -0.36 1.16 16 35 H 0.10 2.06 6.99 -51.92 -0.36 1.70 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.82 5.34 -51.93 -0.28 1.55 16 40 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 41 H 0.08 0.88 5.33 -51.93 -0.28 0.61 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -35.87 353.66 -8.25 -44.13 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.64 Total: 2.81 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -1.23 Total: 12.98 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.49 Total: -50.53 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: 0.15 Total: -27.74 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.87 -8.25 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493294647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.239 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds