Wall clock time and date at job start Tue Mar 31 2020 18:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30953 * 123.07946 * 2 1 4 4 C 1.29352 * 117.49542 * 180.30123 * 3 2 1 5 5 S 1.70911 * 110.65157 * 359.74761 * 4 3 2 6 6 C 1.37075 * 123.07572 * 179.83738 * 2 1 3 7 7 C 1.41719 * 126.18706 * 359.97438 * 6 2 1 8 8 C 1.35570 * 119.99682 * 179.71480 * 7 6 2 9 9 C 1.41542 * 119.99779 * 180.02562 * 8 7 6 10 10 O 1.21781 * 120.00268 * 355.00925 * 9 8 7 11 11 N 1.34784 * 119.99887 * 175.01893 * 9 8 7 12 12 C 1.46966 * 120.59447 * 185.26386 * 11 9 8 13 13 C 1.53367 * 108.63177 * 235.20390 * 12 11 9 14 14 N 1.46964 * 108.63613 * 310.57334 * 13 12 11 15 15 C 1.34774 * 120.59450 * 235.20641 * 14 13 12 16 16 O 1.21690 * 120.00328 * 5.21864 * 15 14 13 17 17 C 1.46375 * 119.99952 * 185.22225 * 15 14 13 18 18 H 1.07994 * 120.00111 * 354.97743 * 17 15 14 19 19 C 1.40053 * 119.99940 * 174.98247 * 17 15 14 20 20 N 1.30669 * 119.99924 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99701 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47081 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47312 * 299.99781 * 21 19 17 24 24 H 1.48500 * 109.47347 * 60.00232 * 21 19 17 25 25 C 1.46958 * 118.81054 * 55.48498 * 14 13 12 26 26 C 1.46958 * 120.59086 * 5.24333 * 11 9 8 27 27 H 1.08999 * 109.47268 * 270.16342 * 1 2 3 28 28 H 1.09000 * 109.46963 * 30.16336 * 1 2 3 29 29 H 1.09000 * 109.47349 * 150.16281 * 1 2 3 30 30 H 1.08001 * 124.67768 * 179.74705 * 4 3 2 31 31 H 1.08000 * 120.00512 * 359.72548 * 7 6 2 32 32 H 1.08001 * 119.99784 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.60626 * 115.45674 * 12 11 9 34 34 H 1.09001 * 109.74964 * 355.03352 * 12 11 9 35 35 H 1.09008 * 109.60405 * 190.83472 * 13 12 11 36 36 H 1.08997 * 109.61382 * 70.32389 * 13 12 11 37 37 H 0.96999 * 119.99545 * 179.97438 * 20 19 17 38 38 H 1.09003 * 109.61170 * 64.26142 * 25 14 13 39 39 H 1.09003 * 109.61151 * 184.77730 * 25 14 13 40 40 H 1.09010 * 109.60830 * 244.54033 * 26 11 9 41 41 H 1.09001 * 109.61575 * 5.04949 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0973 0.0000 4 6 3.5091 0.9714 -0.0060 5 16 3.9534 -0.6789 -0.0057 6 6 2.2551 -1.1486 0.0033 7 6 1.7533 -2.4740 0.0075 8 6 2.6113 -3.5236 0.0046 9 6 2.1101 -4.8473 0.0083 10 8 0.9124 -5.0447 0.1059 11 7 2.9586 -5.8894 -0.0959 12 6 2.4466 -7.2624 -0.2093 13 6 3.0707 -8.1116 0.9049 14 7 4.5244 -7.8952 0.9020 15 6 5.3727 -8.9372 0.7978 16 8 4.9391 -10.0586 0.6097 17 6 6.8159 -8.7202 0.9110 18 1 7.2059 -7.7168 0.9966 19 6 7.6908 -9.8138 0.9081 20 7 7.2188 -11.0279 0.8048 21 14 9.5325 -9.5367 1.0518 22 1 10.2336 -10.8455 1.0249 23 1 9.9978 -8.7020 -0.0850 24 1 9.8304 -8.8423 2.3302 25 6 5.0364 -6.5229 1.0211 26 6 4.4121 -5.6730 -0.0987 27 1 -0.3634 0.0029 1.0276 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8914 -0.5113 30 1 4.2071 1.7956 -0.0107 31 1 0.6874 -2.6479 0.0130 32 1 3.6772 -3.3497 -0.0006 33 1 2.7193 -7.6754 -1.1804 34 1 1.3617 -7.2608 -0.1040 35 1 2.8574 -9.1653 0.7248 36 1 2.6581 -7.8117 1.8682 37 1 7.8249 -11.7852 0.8025 38 1 4.7604 -6.1124 1.9925 39 1 6.1215 -6.5270 0.9177 40 1 4.8248 -5.9729 -1.0621 41 1 4.6256 -4.6194 0.0814 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493294647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:06 Heat of formation + Delta-G solvation = -15.816326 kcal Electronic energy + Delta-G solvation = -25683.272519 eV Core-core repulsion = 21883.052715 eV Total energy + Delta-G solvation = -3800.219805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47201 -40.85068 -39.72762 -37.57296 -35.70604 -34.83114 -34.44839 -32.80701 -31.99847 -29.38442 -28.79900 -27.60054 -26.09365 -24.94160 -24.18442 -22.93069 -21.24995 -20.35791 -19.89773 -18.84891 -18.60248 -18.01230 -17.53650 -17.00945 -16.49717 -16.38950 -16.22075 -15.97877 -15.87015 -15.66235 -14.98547 -14.66203 -14.52675 -14.45933 -14.32647 -13.75276 -13.57500 -13.48964 -13.41473 -13.14130 -13.03840 -12.76624 -12.67692 -12.38381 -12.31006 -12.12628 -12.00979 -11.99727 -11.94193 -11.07749 -10.89884 -10.66322 -10.13388 -10.02655 -9.79125 -9.28806 -8.96663 -8.27624 -6.82813 -1.08935 0.30302 0.63844 0.68056 1.43580 1.46594 1.58186 1.74325 1.92615 2.26495 2.33816 2.48163 2.81667 3.23565 3.55040 3.60424 3.82228 3.91187 3.94344 3.99969 4.15542 4.21497 4.29636 4.38066 4.46861 4.57087 4.66233 4.69775 4.71803 4.74987 4.84876 4.87649 5.04517 5.06197 5.13944 5.29088 5.38331 5.45159 5.72138 6.12291 6.30334 6.41111 6.64149 6.89361 7.07832 7.40317 8.46358 8.68190 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002584 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.346146 B =10831.465590 C =12326.004763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.102 3.898 3 N -0.503 5.503 4 C 0.029 3.971 5 S 0.197 5.803 6 C -0.257 4.257 7 C 0.044 3.956 8 C -0.232 4.232 9 C 0.551 3.449 10 O -0.591 6.591 11 N -0.604 5.604 12 C 0.112 3.888 13 C 0.110 3.890 14 N -0.646 5.646 15 C 0.541 3.459 16 O -0.632 6.632 17 C -0.565 4.565 18 H 0.102 0.898 19 C 0.028 3.972 20 N -0.824 5.824 21 Si 0.996 3.004 22 H -0.281 1.281 23 H -0.250 1.250 24 H -0.252 1.252 25 C 0.103 3.897 26 C 0.095 3.905 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.273 0.727 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 26.675 -1.999 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 N -0.217 5.217 4 C -0.264 4.264 5 S 0.455 5.545 6 C -0.378 4.378 7 C 0.021 3.979 8 C -0.255 4.255 9 C 0.346 3.654 10 O -0.475 6.475 11 N -0.335 5.335 12 C -0.012 4.012 13 C -0.015 4.015 14 N -0.383 5.383 15 C 0.348 3.652 16 O -0.520 6.520 17 C -0.601 4.601 18 H 0.120 0.880 19 C -0.187 4.187 20 N -0.454 5.454 21 Si 0.815 3.185 22 H -0.206 1.206 23 H -0.173 1.173 24 H -0.176 1.176 25 C -0.020 4.020 26 C -0.028 4.028 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.252 0.748 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.745 25.846 -2.065 26.197 hybrid contribution -0.324 -0.631 0.114 0.718 sum -4.068 25.215 -1.951 25.615 Atomic orbital electron populations 1.20571 0.85508 1.04475 1.04211 1.21512 0.99228 0.85579 0.97291 1.66023 1.06081 1.31990 1.17599 1.29236 0.95041 1.01789 1.00342 1.83960 1.04039 1.02385 1.64164 1.23707 0.97453 0.97955 1.18699 1.20572 1.00689 0.88214 0.88379 1.22022 1.01350 0.91344 1.10779 1.17335 0.85611 0.86297 0.76191 1.90783 1.16714 1.86866 1.53136 1.48035 1.07646 1.06270 1.71585 1.21780 0.99836 0.81234 0.98349 1.21504 0.82487 0.99813 0.97655 1.48056 1.04503 1.07298 1.78440 1.18742 0.87968 0.82509 0.76028 1.90552 1.79422 1.25497 1.56484 1.21473 0.89528 0.95334 1.53772 0.88048 1.27026 1.06565 0.93881 0.91268 1.70194 1.38471 1.00279 1.36454 0.85091 0.74557 0.78335 0.80489 1.20621 1.17340 1.17598 1.22153 1.00917 0.81166 0.97794 1.22523 0.78188 1.02168 0.99906 0.89145 0.89588 0.89515 0.74807 0.83748 0.83467 0.91886 0.88477 0.91476 0.92722 0.91700 0.91918 0.87456 0.90712 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.04 71.24 0.72 -0.41 16 2 C 0.10 1.71 6.85 42.42 0.29 2.00 16 3 N -0.50 -8.44 10.49 -189.45 -1.99 -10.42 16 4 C 0.03 0.32 12.20 130.61 1.59 1.92 16 5 S 0.20 2.30 21.97 -56.49 -1.24 1.06 16 6 C -0.26 -4.29 6.26 22.86 0.14 -4.15 16 7 C 0.04 0.84 8.96 22.51 0.20 1.04 16 8 C -0.23 -4.90 8.71 22.47 0.20 -4.70 16 9 C 0.55 15.91 7.45 85.05 0.63 16.54 16 10 O -0.59 -20.74 15.54 -4.61 -0.07 -20.81 16 11 N -0.60 -17.96 2.95 -827.78 -2.44 -20.40 16 12 C 0.11 3.83 6.59 86.41 0.57 4.40 16 13 C 0.11 4.45 6.60 86.41 0.57 5.02 16 14 N -0.65 -28.54 2.94 -822.24 -2.42 -30.96 16 15 C 0.54 30.50 7.62 86.36 0.66 31.16 16 16 O -0.63 -41.95 14.45 -4.32 -0.06 -42.01 16 17 C -0.57 -30.12 8.87 24.83 0.22 -29.90 16 18 H 0.10 4.62 5.66 -2.91 -0.02 4.60 16 19 C 0.03 1.48 5.50 85.31 0.47 1.95 16 20 N -0.82 -49.56 11.84 21.84 0.26 -49.31 16 21 Si 1.00 38.77 29.56 68.60 2.03 40.80 16 22 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 24 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 25 C 0.10 3.35 6.51 86.57 0.56 3.92 16 26 C 0.09 2.42 6.48 86.57 0.56 2.98 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 0.98 7.10 -2.39 -0.02 0.96 16 30 H 0.24 0.74 8.06 -2.91 -0.02 0.72 16 31 H 0.15 2.87 6.54 -2.91 -0.02 2.85 16 32 H 0.15 2.39 4.81 -2.91 -0.01 2.37 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 3.25 7.00 -2.39 -0.02 3.23 16 35 H 0.07 3.09 6.99 -2.38 -0.02 3.08 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 3.45 5.34 -2.39 -0.01 3.44 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.13 2.17 5.33 -2.39 -0.01 2.16 16 Total: -1.00 -81.99 353.66 2.54 -79.45 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.09 Total: 20.83 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 7.38 Total: 31.77 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -6.59 Total: -111.09 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.13 Total: -62.82 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.24 Total: 1.06 kcal Total: -81.99 2.54 -79.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493294647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.636 kcal (2) G-P(sol) polarization free energy of solvation -81.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds