Wall clock time and date at job start Tue Mar 31 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46497 * 109.46940 * 120.00037 * 2 1 3 5 5 C 1.35976 * 126.06985 * 275.24822 * 4 2 1 6 6 C 1.35702 * 107.55066 * 180.17391 * 5 4 2 7 7 N 1.40806 * 126.06780 * 179.90135 * 6 5 4 8 8 S 1.65603 * 119.99799 * 225.38426 * 7 6 5 9 9 O 1.42097 * 106.40283 * 312.96709 * 8 7 6 10 10 O 1.42105 * 106.39885 * 180.02562 * 8 7 6 11 11 C 1.76195 * 107.22030 * 66.50920 * 8 7 6 12 12 C 1.37642 * 120.13075 * 247.85667 * 11 8 7 13 13 C 1.38607 * 120.24994 * 180.31966 * 12 11 8 14 14 C 1.38659 * 120.50166 * 359.66961 * 13 12 11 15 15 C 1.37593 * 120.24593 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12908 * 67.54950 * 11 8 7 17 17 C 1.41393 * 120.24323 * 359.97438 * 16 11 8 18 18 H 1.08005 * 120.00490 * 326.39541 * 17 16 11 19 19 C 1.39950 * 120.00137 * 146.39227 * 17 16 11 20 20 N 1.30824 * 120.00019 * 339.02063 * 19 17 16 21 21 Si 1.86796 * 119.99976 * 159.01634 * 19 17 16 22 22 H 1.48500 * 109.47174 * 184.99789 * 21 19 17 23 23 H 1.48509 * 109.47295 * 304.99426 * 21 19 17 24 24 H 1.48503 * 109.47262 * 64.99641 * 21 19 17 25 25 C 1.40218 * 107.86805 * 359.63843 * 6 5 4 26 26 N 1.30865 * 108.36497 * 0.22578 * 25 6 5 27 27 H 1.08997 * 109.47007 * 300.00272 * 1 2 3 28 28 H 1.09001 * 109.46847 * 60.00644 * 1 2 3 29 29 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47272 * 239.99358 * 2 1 3 31 31 H 1.08994 * 109.47268 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47154 * 300.00060 * 3 2 1 33 33 H 1.08999 * 109.46852 * 59.99808 * 3 2 1 34 34 H 1.07995 * 126.22432 * 0.07288 * 5 4 2 35 35 H 0.96996 * 119.99498 * 45.38367 * 7 6 5 36 36 H 1.08004 * 119.87126 * 0.02562 * 12 11 8 37 37 H 1.07998 * 119.74830 * 179.69596 * 13 12 11 38 38 H 1.08003 * 119.87383 * 180.02562 * 14 13 12 39 39 H 1.08008 * 120.12610 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99743 * 354.01414 * 20 19 17 41 41 H 1.08003 * 125.82492 * 180.22791 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1369 2.4261 6 6 2.6601 -1.1077 3.2498 7 7 2.9753 -0.9566 4.6138 8 16 4.3852 -1.5861 5.2124 9 8 4.4746 -2.9143 4.7153 10 8 4.4089 -1.2711 6.5978 11 6 5.7110 -0.6890 4.4761 12 6 6.5553 -1.3113 3.5847 13 6 7.6030 -0.6097 3.0091 14 6 7.8092 0.7262 3.3179 15 6 6.9739 1.3702 4.2015 16 6 5.9069 0.6679 4.7921 17 6 5.0417 1.3195 5.7010 18 1 3.9983 1.0441 5.7456 19 6 5.5374 2.3215 6.5430 20 7 6.8184 2.3851 6.8005 21 14 4.3697 3.5682 7.2992 22 1 5.1498 4.5873 8.0463 23 1 3.5901 4.2321 6.2236 24 1 3.4410 2.8763 8.2288 25 6 2.7701 -2.2894 2.5031 26 7 2.3867 -2.0397 1.2771 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9911 0.8892 2.6976 35 1 2.3666 -0.4839 5.2027 36 1 6.4036 -2.3514 3.3365 37 1 8.2635 -1.1073 2.3145 38 1 8.6285 1.2632 2.8632 39 1 7.1360 2.4110 4.4404 40 1 7.4127 1.6889 6.4796 41 1 3.1128 -3.2433 2.8762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517004786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:32 Heat of formation + Delta-G solvation = 10.619934 kcal Electronic energy + Delta-G solvation = -27426.011629 eV Core-core repulsion = 23626.938186 eV Total energy + Delta-G solvation = -3799.073443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99591 -37.83825 -36.39859 -35.99168 -34.92180 -34.13918 -33.90618 -30.20265 -30.04985 -29.50214 -28.12669 -27.45449 -25.34916 -22.94168 -21.84432 -21.24628 -20.96606 -20.03548 -18.66723 -18.22773 -17.44934 -16.75816 -16.14230 -15.53400 -15.18365 -14.90833 -14.72804 -14.42728 -14.15582 -13.99721 -13.70579 -13.37648 -13.06599 -13.01988 -12.67639 -12.46053 -12.34637 -12.27826 -11.71322 -11.56404 -11.39784 -11.32681 -11.25704 -11.16546 -11.15575 -11.03020 -10.87761 -10.54044 -10.50222 -10.10602 -9.81980 -9.30603 -9.23818 -9.19254 -8.24014 -7.79118 -7.74994 -7.43488 -4.83002 1.37553 2.04606 2.21212 2.53097 2.64406 3.04063 3.06704 3.16162 3.25123 3.86943 3.88700 4.35023 4.40249 4.64113 4.68748 4.85262 4.96714 5.11622 5.21242 5.25131 5.35327 5.45834 5.51012 5.60689 5.68390 5.81449 5.88142 5.90811 5.95237 6.05282 6.26638 6.39239 6.62415 6.85427 6.88988 7.10386 7.13068 7.26666 7.35466 7.51882 7.58175 7.61689 7.81659 7.88849 7.96664 8.34388 8.58321 9.84337 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.005107 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.210101 B = 5480.868295 C = 6014.985838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 C -0.167 4.167 4 N -0.370 5.370 5 C 0.046 3.954 6 C 0.014 3.986 7 N -1.037 6.037 8 S 2.700 3.300 9 O -0.990 6.990 10 O -0.957 6.957 11 C -0.769 4.769 12 C 0.014 3.986 13 C -0.259 4.259 14 C -0.056 4.056 15 C -0.206 4.206 16 C 0.168 3.832 17 C -0.503 4.503 18 H 0.084 0.916 19 C 0.044 3.956 20 N -0.780 5.780 21 Si 1.063 2.937 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.269 1.269 25 C 0.044 3.956 26 N -0.287 5.287 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.175 0.825 35 H 0.416 0.584 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.302 0.698 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 1.093 -9.670 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 C -0.225 4.225 4 N -0.156 5.156 5 C -0.103 4.103 6 C -0.092 4.092 7 N -0.786 5.786 8 S 2.798 3.202 9 O -0.981 6.981 10 O -0.948 6.948 11 C -0.865 4.865 12 C -0.006 4.006 13 C -0.280 4.280 14 C -0.075 4.075 15 C -0.226 4.226 16 C 0.163 3.837 17 C -0.530 4.530 18 H 0.102 0.898 19 C -0.180 4.180 20 N -0.402 5.402 21 Si 0.885 3.115 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.194 1.194 25 C -0.144 4.144 26 N -0.108 5.108 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.193 0.807 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.292 1.230 -9.429 14.012 hybrid contribution 0.477 -0.211 -0.392 0.653 sum -9.814 1.019 -9.821 13.922 Atomic orbital electron populations 1.22250 0.93911 1.03166 1.02928 1.21186 0.94475 0.92789 0.85625 1.22218 1.02833 0.93969 1.03501 1.48630 1.51583 1.07564 1.07808 1.22309 1.04088 0.98975 0.84947 1.17181 1.13342 0.93098 0.85586 1.53084 1.38498 1.74258 1.12778 1.01283 0.72572 0.73035 0.73285 1.93424 1.86739 1.35972 1.81953 1.93564 1.85925 1.85002 1.30278 1.29901 1.23962 1.07330 1.25278 1.20342 0.92006 0.97402 0.90836 1.20472 1.03134 0.95676 1.08685 1.20845 0.96554 0.94479 0.95651 1.21298 1.00100 0.99247 1.01937 1.17018 0.90203 0.88206 0.88243 1.20771 0.98042 1.17684 1.16539 0.89837 1.27062 0.98111 0.98374 0.94431 1.70433 1.04804 1.33139 1.31784 0.83669 0.75069 0.75485 0.77232 1.19469 1.19763 1.19352 1.24385 0.99945 0.99388 0.90717 1.77295 1.20362 0.93454 1.19712 0.91841 0.90695 0.91674 0.88086 0.91144 0.90192 0.91345 0.80745 0.74935 0.87202 0.88503 0.88604 0.87324 0.88446 0.78541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.52 37.16 0.35 -0.97 16 2 C 0.16 1.62 3.93 -67.93 -0.27 1.35 16 3 C -0.17 -1.44 8.84 37.16 0.33 -1.11 16 4 N -0.37 -5.22 3.55 -54.50 -0.19 -5.42 16 5 C 0.05 0.68 10.66 -16.62 -0.18 0.50 16 6 C 0.01 0.25 6.59 -83.89 -0.55 -0.31 16 7 N -1.04 -18.56 5.23 32.30 0.17 -18.40 16 8 S 2.70 58.86 4.97 -107.50 -0.53 58.32 16 9 O -0.99 -21.91 14.74 -57.17 -0.84 -22.75 16 10 O -0.96 -23.62 16.44 -57.17 -0.94 -24.56 16 11 C -0.77 -18.27 5.94 -38.87 -0.23 -18.50 16 12 C 0.01 0.32 9.53 -39.66 -0.38 -0.06 16 13 C -0.26 -5.63 10.05 -39.29 -0.39 -6.02 16 14 C -0.06 -1.23 10.02 -39.66 -0.40 -1.63 16 15 C -0.21 -4.94 7.93 -38.88 -0.31 -5.25 16 16 C 0.17 4.19 5.14 -106.83 -0.55 3.64 16 17 C -0.50 -12.37 7.34 -37.74 -0.28 -12.65 16 18 H 0.08 1.91 6.20 -52.48 -0.33 1.58 16 19 C 0.04 1.07 5.00 -17.34 -0.09 0.98 16 20 N -0.78 -19.90 12.55 55.55 0.70 -19.20 16 21 Si 1.06 20.31 29.98 -169.99 -5.10 15.22 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 C 0.04 0.77 11.12 -17.22 -0.19 0.58 16 26 N -0.29 -4.78 12.57 30.70 0.39 -4.39 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 34 H 0.18 2.14 7.30 -52.49 -0.38 1.76 16 35 H 0.42 6.42 8.76 -34.48 -0.30 6.12 16 36 H 0.11 2.32 7.33 -52.48 -0.38 1.94 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.11 2.61 6.95 -52.48 -0.36 2.25 16 40 H 0.30 7.97 6.70 -40.82 -0.27 7.69 16 41 H 0.20 3.41 6.80 -52.48 -0.36 3.06 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.27 355.15 -9.07 -40.35 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -4.94 Total: 14.91 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: -3.13 Total: -39.44 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.06 Total: -47.40 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.78 Total: -47.31 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.10 Total: 15.22 kcal Atomic # 16 Polarization: 58.86 SS G_CDS: -0.53 Total: 58.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.27 -9.07 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517004786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.965 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds