Wall clock time and date at job start Tue Mar 31 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 N 1.46497 * 109.46940 * 120.00037 * 2 1 3 5 5 C 1.35976 * 126.06985 * 275.24822 * 4 2 1 6 6 C 1.35702 * 107.55066 * 180.17391 * 5 4 2 7 7 N 1.40806 * 126.06780 * 179.90135 * 6 5 4 8 8 S 1.65603 * 119.99799 * 225.38426 * 7 6 5 9 9 O 1.42097 * 106.40283 * 312.96709 * 8 7 6 10 10 O 1.42105 * 106.39885 * 180.02562 * 8 7 6 11 11 C 1.76195 * 107.22030 * 66.50920 * 8 7 6 12 12 C 1.37642 * 120.13075 * 247.85667 * 11 8 7 13 13 C 1.38607 * 120.24994 * 180.31966 * 12 11 8 14 14 C 1.38659 * 120.50166 * 359.66961 * 13 12 11 15 15 C 1.37593 * 120.24593 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12908 * 67.54950 * 11 8 7 17 17 C 1.41393 * 120.24323 * 359.97438 * 16 11 8 18 18 H 1.08005 * 120.00490 * 326.39541 * 17 16 11 19 19 C 1.39950 * 120.00137 * 146.39227 * 17 16 11 20 20 N 1.30824 * 120.00019 * 339.02063 * 19 17 16 21 21 Si 1.86796 * 119.99976 * 159.01634 * 19 17 16 22 22 H 1.48500 * 109.47174 * 184.99789 * 21 19 17 23 23 H 1.48509 * 109.47295 * 304.99426 * 21 19 17 24 24 H 1.48503 * 109.47262 * 64.99641 * 21 19 17 25 25 C 1.40218 * 107.86805 * 359.63843 * 6 5 4 26 26 N 1.30865 * 108.36497 * 0.22578 * 25 6 5 27 27 H 1.08997 * 109.47007 * 300.00272 * 1 2 3 28 28 H 1.09001 * 109.46847 * 60.00644 * 1 2 3 29 29 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47272 * 239.99358 * 2 1 3 31 31 H 1.08994 * 109.47268 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47154 * 300.00060 * 3 2 1 33 33 H 1.08999 * 109.46852 * 59.99808 * 3 2 1 34 34 H 1.07995 * 126.22432 * 0.07288 * 5 4 2 35 35 H 0.96996 * 119.99498 * 45.38367 * 7 6 5 36 36 H 1.08004 * 119.87126 * 0.02562 * 12 11 8 37 37 H 1.07998 * 119.74830 * 179.69596 * 13 12 11 38 38 H 1.08003 * 119.87383 * 180.02562 * 14 13 12 39 39 H 1.08008 * 120.12610 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99743 * 354.01414 * 20 19 17 41 41 H 1.08003 * 125.82492 * 180.22791 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1903 -0.1369 2.4261 6 6 2.6601 -1.1077 3.2498 7 7 2.9753 -0.9566 4.6138 8 16 4.3852 -1.5861 5.2124 9 8 4.4746 -2.9143 4.7153 10 8 4.4089 -1.2711 6.5978 11 6 5.7110 -0.6890 4.4761 12 6 6.5553 -1.3113 3.5847 13 6 7.6030 -0.6097 3.0091 14 6 7.8092 0.7262 3.3179 15 6 6.9739 1.3702 4.2015 16 6 5.9069 0.6679 4.7921 17 6 5.0417 1.3195 5.7010 18 1 3.9983 1.0441 5.7456 19 6 5.5374 2.3215 6.5430 20 7 6.8184 2.3851 6.8005 21 14 4.3697 3.5682 7.2992 22 1 5.1498 4.5873 8.0463 23 1 3.5901 4.2321 6.2236 24 1 3.4410 2.8763 8.2288 25 6 2.7701 -2.2894 2.5031 26 7 2.3867 -2.0397 1.2771 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.9911 0.8892 2.6976 35 1 2.3666 -0.4839 5.2027 36 1 6.4036 -2.3514 3.3365 37 1 8.2635 -1.1073 2.3145 38 1 8.6285 1.2632 2.8632 39 1 7.1360 2.4110 4.4404 40 1 7.4127 1.6889 6.4796 41 1 3.1128 -3.2433 2.8762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517004786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:32 Heat of formation + Delta-G solvation = -9.544803 kcal Electronic energy + Delta-G solvation = -27426.886037 eV Core-core repulsion = 23626.938186 eV Total energy + Delta-G solvation = -3799.947851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20505 -39.62314 -38.13193 -37.05155 -36.73945 -35.84852 -35.27881 -31.98816 -31.29830 -31.17729 -29.32766 -28.14701 -27.15937 -24.00335 -23.61045 -23.02673 -22.29067 -21.13648 -20.28654 -19.92944 -18.75683 -18.38745 -17.83936 -16.90271 -16.62710 -16.21357 -16.12688 -15.76566 -15.65528 -15.46925 -15.09390 -14.93102 -14.49999 -14.23339 -14.03077 -13.95688 -13.33988 -13.20360 -13.16001 -13.05523 -12.96661 -12.94132 -12.84339 -12.71436 -12.39907 -12.25110 -12.22559 -12.03697 -11.96452 -11.58588 -11.46744 -11.02013 -10.97112 -10.37617 -10.03217 -9.61513 -9.28477 -9.05314 -6.69126 -0.31104 0.40729 0.83842 0.85394 1.46427 1.52756 1.65356 1.71497 1.79467 2.28111 2.33338 2.60938 2.90227 3.31894 3.54042 3.77593 3.86824 3.95332 4.07210 4.13085 4.20585 4.31393 4.38631 4.49734 4.59201 4.67383 4.75796 4.80205 4.83602 4.92730 5.02862 5.09324 5.22064 5.25824 5.30838 5.46536 5.56392 5.57837 5.68558 5.81642 5.98674 6.02295 6.15043 6.24806 6.54185 6.63875 6.78112 7.96196 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.005107 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.210101 B = 5480.868295 C = 6014.985838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 C -0.163 4.163 4 N -0.360 5.360 5 C 0.061 3.939 6 C -0.016 4.016 7 N -1.023 6.023 8 S 2.718 3.282 9 O -0.998 6.998 10 O -0.991 6.991 11 C -0.785 4.785 12 C -0.003 4.003 13 C -0.257 4.257 14 C -0.055 4.055 15 C -0.226 4.226 16 C 0.149 3.851 17 C -0.529 4.529 18 H 0.093 0.907 19 C 0.008 3.992 20 N -0.806 5.806 21 Si 1.105 2.895 22 H -0.272 1.272 23 H -0.245 1.245 24 H -0.259 1.259 25 C 0.028 3.972 26 N -0.303 5.303 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.203 0.797 35 H 0.427 0.573 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.284 0.716 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 2.388 -11.439 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 C -0.221 4.221 4 N -0.145 5.145 5 C -0.090 4.090 6 C -0.122 4.122 7 N -0.776 5.776 8 S 2.815 3.185 9 O -0.988 6.988 10 O -0.981 6.981 11 C -0.879 4.879 12 C -0.022 4.022 13 C -0.277 4.277 14 C -0.073 4.073 15 C -0.246 4.246 16 C 0.144 3.856 17 C -0.556 4.556 18 H 0.111 0.889 19 C -0.210 4.210 20 N -0.428 5.428 21 Si 0.921 3.079 22 H -0.197 1.197 23 H -0.168 1.168 24 H -0.184 1.184 25 C -0.160 4.160 26 N -0.124 5.124 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.265 0.735 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.805 2.513 -11.239 16.493 hybrid contribution 0.941 -0.706 -0.050 1.177 sum -10.865 1.807 -11.290 15.772 Atomic orbital electron populations 1.22211 0.91923 1.02827 1.04519 1.21667 0.96009 0.93333 0.84126 1.22232 1.01517 0.93013 1.05318 1.49116 1.49930 1.06755 1.08708 1.22704 1.02017 0.99595 0.84690 1.17351 1.15654 0.93894 0.85314 1.52513 1.37062 1.74360 1.13670 1.00634 0.72761 0.72741 0.72339 1.93408 1.87083 1.36422 1.81873 1.93514 1.86650 1.85441 1.32505 1.30221 1.25189 1.07277 1.25183 1.20647 0.92378 0.98180 0.91039 1.20886 1.02806 0.95660 1.08375 1.21204 0.96693 0.94798 0.94654 1.21359 1.01059 0.99135 1.03071 1.17315 0.90764 0.88793 0.88690 1.21013 0.98606 1.18776 1.17237 0.88909 1.28465 0.98658 0.99740 0.94104 1.70553 1.05548 1.33123 1.33595 0.83212 0.73650 0.73614 0.77470 1.19654 1.16806 1.18367 1.24336 1.00866 0.99507 0.91304 1.77244 1.20819 0.95086 1.19289 0.91635 0.87711 0.92965 0.87715 0.93132 0.87135 0.90834 0.78022 0.73539 0.86110 0.85425 0.85502 0.88243 0.90347 0.79356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.52 71.98 0.69 -1.35 16 2 C 0.15 2.60 3.93 44.99 0.18 2.78 16 3 C -0.16 -2.29 8.84 71.98 0.64 -1.66 16 4 N -0.36 -9.53 3.55 -326.35 -1.16 -10.69 16 5 C 0.06 1.68 10.66 83.46 0.89 2.57 16 6 C -0.02 -0.53 6.59 37.59 0.25 -0.28 16 7 N -1.02 -36.30 5.23 -51.74 -0.27 -36.57 16 8 S 2.72 119.67 4.97 -56.49 -0.28 119.39 16 9 O -1.00 -44.60 14.74 -128.00 -1.89 -46.48 16 10 O -0.99 -49.78 16.44 -128.00 -2.10 -51.89 16 11 C -0.78 -37.52 5.94 22.73 0.13 -37.39 16 12 C 0.00 -0.12 9.53 22.22 0.21 0.09 16 13 C -0.26 -10.77 10.05 22.46 0.23 -10.54 16 14 C -0.05 -2.34 10.02 22.22 0.22 -2.12 16 15 C -0.23 -10.93 7.93 22.73 0.18 -10.75 16 16 C 0.15 7.51 5.14 -21.29 -0.11 7.40 16 17 C -0.53 -26.24 7.34 23.46 0.17 -26.07 16 18 H 0.09 4.25 6.20 -2.91 -0.02 4.23 16 19 C 0.01 0.39 5.00 85.26 0.43 0.81 16 20 N -0.81 -42.15 12.55 21.83 0.27 -41.88 16 21 Si 1.11 40.11 29.98 68.60 2.06 42.17 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.24 -7.72 7.11 99.48 0.71 -7.01 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 C 0.03 0.96 11.12 85.32 0.95 1.91 16 26 N -0.30 -9.84 12.57 -56.77 -0.71 -10.56 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.97 7.18 -2.39 -0.02 0.96 16 34 H 0.20 4.36 7.30 -2.91 -0.02 4.34 16 35 H 0.43 12.94 8.76 -96.74 -0.85 12.09 16 36 H 0.12 5.06 7.33 -2.91 -0.02 5.04 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.10 4.90 6.95 -2.91 -0.02 4.88 16 40 H 0.28 15.61 6.70 -92.71 -0.62 14.99 16 41 H 0.19 6.70 6.80 -2.91 -0.02 6.68 16 Total: -1.00 -68.71 355.15 1.34 -67.37 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: 0.37 Total: 43.72 kcal Atomic # 6 Polarization: -79.65 SS G_CDS: 5.05 Total: -74.60 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -1.87 Total: -99.69 kcal Atomic # 8 Polarization: -94.38 SS G_CDS: -3.99 Total: -98.37 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.06 Total: 42.17 kcal Atomic # 16 Polarization: 119.67 SS G_CDS: -0.28 Total: 119.39 kcal Total: -68.71 1.34 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517004786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.828 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds