Wall clock time and date at job start Tue Mar 31 2020 18:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.31030 * 122.31362 * 2 1 4 4 S 1.75584 * 109.49775 * 179.97438 * 3 2 1 5 5 C 1.71462 * 91.30653 * 359.73691 * 4 3 2 6 6 N 1.33670 * 128.66222 * 179.97438 * 5 4 3 7 7 C 1.31618 * 122.37459 * 180.02562 * 6 5 4 8 8 C 1.39976 * 119.29203 * 0.02562 * 7 6 5 9 9 C 1.46745 * 120.86111 * 180.02562 * 8 7 6 10 10 O 1.21686 * 119.99952 * 309.52199 * 9 8 7 11 11 N 1.34779 * 119.99946 * 129.51898 * 9 8 7 12 12 C 1.46495 * 120.00126 * 16.53479 * 11 9 8 13 13 C 1.50705 * 109.47126 * 120.00808 * 12 11 9 14 14 H 1.07998 * 119.99904 * 355.03837 * 13 12 11 15 15 C 1.37871 * 119.99923 * 175.03359 * 13 12 11 16 16 N 1.31513 * 120.00158 * 2.65828 * 15 13 12 17 17 Si 1.86802 * 120.00016 * 182.65062 * 15 13 12 18 18 H 1.48509 * 109.47048 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46994 * 120.00161 * 17 15 13 20 20 H 1.48492 * 109.47594 * 240.00507 * 17 15 13 21 21 C 1.46502 * 119.99753 * 196.53686 * 11 9 8 22 22 C 1.53003 * 109.46942 * 122.61015 * 21 11 9 23 23 C 1.53000 * 109.47118 * 242.60489 * 21 11 9 24 24 C 1.41282 * 118.27921 * 359.97438 * 8 7 6 25 25 O 1.21879 * 120.30391 * 179.97438 * 24 8 7 26 26 N 1.35130 * 109.93822 * 0.02562 * 5 4 3 27 27 H 1.09000 * 109.47205 * 273.54889 * 1 2 3 28 28 H 1.09005 * 109.46686 * 33.55059 * 1 2 3 29 29 H 1.08998 * 109.47110 * 153.54268 * 1 2 3 30 30 H 1.07999 * 125.24791 * 359.73227 * 3 2 1 31 31 H 1.08004 * 120.35284 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47753 * 240.01058 * 12 11 9 33 33 H 1.09000 * 109.47145 * 0.02562 * 12 11 9 34 34 H 0.97003 * 119.99683 * 179.97438 * 16 15 13 35 35 H 1.08992 * 109.47332 * 2.60613 * 21 11 9 36 36 H 1.08992 * 109.47435 * 59.99662 * 22 21 11 37 37 H 1.09003 * 109.47002 * 180.02562 * 22 21 11 38 38 H 1.08998 * 109.46808 * 299.99301 * 22 21 11 39 39 H 1.09006 * 109.46829 * 60.00193 * 23 21 11 40 40 H 1.08997 * 109.47211 * 180.02562 * 23 21 11 41 41 H 1.09002 * 109.47044 * 300.00446 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2075 1.1074 0.0000 4 16 3.9196 0.7179 0.0007 5 6 3.5775 -0.9622 0.0089 6 7 4.4336 -1.9888 0.0127 7 6 4.0313 -3.2419 0.0184 8 6 2.6596 -3.5209 0.0201 9 6 2.1730 -4.9053 0.0270 10 8 2.6038 -5.7056 -0.7820 11 7 1.2491 -5.2903 0.9296 12 6 0.4684 -4.2841 1.6535 13 6 -0.9973 -4.4809 1.3631 14 1 -1.3103 -5.2233 0.6439 15 6 -1.9385 -3.7133 2.0157 16 7 -1.5554 -2.7738 2.8525 17 14 -3.7578 -4.0076 1.7111 18 1 -3.9236 -5.1135 0.7338 19 1 -4.4208 -4.3731 2.9887 20 1 -4.3755 -2.7708 1.1691 21 6 1.0255 -6.7152 1.1866 22 6 1.2442 -7.0057 2.6728 23 6 -0.4083 -7.0842 0.8005 24 6 1.7558 -2.4350 0.0161 25 8 0.5536 -2.6356 0.0169 26 7 2.2408 -1.1603 0.0101 27 1 -0.3633 0.0636 1.0257 28 1 -0.3633 0.8565 -0.5680 29 1 -0.3633 -0.9200 -0.4578 30 1 1.7953 2.1056 -0.0041 31 1 4.7519 -4.0464 0.0210 32 1 0.6439 -4.3890 2.7241 33 1 0.7718 -3.2879 1.3313 34 1 -2.2176 -2.2336 3.3113 35 1 1.7246 -7.3053 0.5943 36 1 0.5451 -6.4155 3.2651 37 1 1.0783 -8.0659 2.8640 38 1 2.2656 -6.7428 2.9478 39 1 -0.5641 -6.8772 -0.2583 40 1 -0.5748 -8.1442 0.9922 41 1 -1.1074 -6.4940 1.3929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539625403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:00 Heat of formation + Delta-G solvation = 45.232293 kcal Electronic energy + Delta-G solvation = -28257.045496 eV Core-core repulsion = 24459.472958 eV Total energy + Delta-G solvation = -3797.572538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.73656 -41.00971 -39.22276 -38.46850 -37.39870 -34.57797 -33.46669 -33.04192 -31.79789 -29.63746 -29.35680 -28.03776 -27.01891 -25.39275 -24.65477 -23.44817 -21.90389 -20.30627 -20.06138 -19.71641 -18.81360 -18.41792 -17.96303 -17.63388 -16.89215 -16.42801 -16.22158 -15.83151 -15.65646 -15.22688 -15.02087 -14.83660 -14.54351 -14.41780 -14.29585 -14.13568 -13.86902 -13.72721 -13.54305 -13.06933 -12.91860 -12.75938 -12.73996 -12.40573 -12.35505 -12.20598 -12.07677 -11.69819 -11.52781 -11.20651 -10.86960 -10.82303 -10.79660 -10.47363 -9.95302 -9.32306 -8.63678 -8.04994 -6.04117 -1.14698 -0.45744 0.21088 0.33366 0.76610 1.00364 1.36108 1.38486 1.48761 1.67359 2.31858 2.40228 2.53477 2.97491 3.10168 3.26416 3.78521 3.86107 3.94212 4.15561 4.16769 4.27408 4.32924 4.45444 4.55176 4.63765 4.75769 4.81359 4.82686 4.93302 4.97481 5.05079 5.08844 5.25501 5.32938 5.44260 5.57012 5.63410 5.86120 5.98233 6.28510 6.30669 6.57837 6.75774 6.96481 7.30046 7.55677 9.04204 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.005726 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.735358 B = 4888.767468 C = 6716.029450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.068 3.932 3 C -0.225 4.225 4 S 0.370 5.630 5 C 0.246 3.754 6 N -0.535 5.535 7 C 0.263 3.737 8 C -0.370 4.370 9 C 0.584 3.416 10 O -0.595 6.595 11 N -0.585 5.585 12 C 0.207 3.793 13 C -0.507 4.507 14 H 0.068 0.932 15 C 0.020 3.980 16 N -0.921 5.921 17 Si 0.941 3.059 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.283 1.283 21 C 0.134 3.866 22 C -0.143 4.143 23 C -0.167 4.167 24 C 0.494 3.506 25 O -0.455 6.455 26 N -0.451 5.451 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.251 0.749 31 H 0.201 0.799 32 H -0.020 1.020 33 H 0.100 0.900 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 12.013 -3.335 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.039 4.039 3 C -0.362 4.362 4 S 0.624 5.376 5 C -0.114 4.114 6 N -0.264 5.264 7 C 0.107 3.893 8 C -0.386 4.386 9 C 0.373 3.627 10 O -0.480 6.480 11 N -0.314 5.314 12 C 0.088 3.912 13 C -0.545 4.545 14 H 0.086 0.914 15 C -0.178 4.178 16 N -0.562 5.562 17 Si 0.768 3.232 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.209 1.209 21 C 0.031 3.969 22 C -0.200 4.200 23 C -0.225 4.225 24 C 0.296 3.704 25 O -0.331 6.331 26 N -0.159 5.159 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.082 0.918 30 H 0.267 0.733 31 H 0.218 0.782 32 H -0.002 1.002 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.266 12.474 -3.596 17.860 hybrid contribution -3.391 -1.582 0.146 3.745 sum 8.875 10.892 -3.451 14.467 Atomic orbital electron populations 1.20869 0.85556 1.05373 1.04196 1.20087 0.97748 0.83498 1.02615 1.25729 0.96484 1.03457 1.10482 1.83797 1.01423 0.81686 1.70658 1.26861 0.82021 1.06879 0.95642 1.68297 1.31228 0.97934 1.28972 1.23214 0.92122 0.93216 0.80754 1.21154 0.95638 0.93404 1.28382 1.17482 0.78799 0.86446 0.80021 1.90649 1.62561 1.55635 1.39122 1.48302 1.35436 1.08014 1.39604 1.20656 0.90790 0.90636 0.89113 1.21868 0.91671 1.18842 1.22132 0.91392 1.25430 1.01770 0.95009 0.95616 1.70061 1.34238 1.22021 1.29914 0.85768 0.81824 0.77846 0.77756 1.19925 1.20531 1.20936 1.21006 0.97562 0.81254 0.97075 1.21956 1.01115 1.02502 0.94467 1.22622 0.97751 1.01582 1.00509 1.17333 0.89880 0.81288 0.81875 1.91035 1.15508 1.81629 1.44948 1.45261 1.07790 1.09468 1.53372 0.90792 0.85893 0.91790 0.73309 0.78198 1.00211 0.88435 0.93397 0.90354 0.93650 0.89226 0.92933 0.95469 0.90909 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 9.53 71.24 0.68 -2.24 16 2 C 0.07 1.77 6.62 41.64 0.28 2.04 16 3 C -0.23 -3.20 10.85 67.75 0.74 -2.47 16 4 S 0.37 5.22 23.14 -56.49 -1.31 3.91 16 5 C 0.25 6.72 8.07 179.29 1.45 8.17 16 6 N -0.53 -15.87 10.39 -196.85 -2.04 -17.91 16 7 C 0.26 8.83 11.02 85.15 0.94 9.77 16 8 C -0.37 -15.76 5.37 -19.88 -0.11 -15.87 16 9 C 0.58 28.20 6.95 86.47 0.60 28.80 16 10 O -0.60 -30.08 16.53 -4.30 -0.07 -30.15 16 11 N -0.58 -28.80 2.61 -806.75 -2.11 -30.90 16 12 C 0.21 11.25 4.20 85.64 0.36 11.61 16 13 C -0.51 -28.75 6.32 25.60 0.16 -28.59 16 14 H 0.07 3.92 4.66 -2.91 -0.01 3.91 16 15 C 0.02 1.11 5.46 84.65 0.46 1.57 16 16 N -0.92 -53.45 13.29 21.44 0.28 -53.16 16 17 Si 0.94 45.02 29.54 68.60 2.03 47.04 16 18 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 C 0.13 5.80 3.21 44.99 0.14 5.95 16 22 C -0.14 -5.32 9.04 71.98 0.65 -4.67 16 23 C -0.17 -7.17 7.82 71.98 0.56 -6.61 16 24 C 0.49 21.48 6.30 84.73 0.53 22.01 16 25 O -0.46 -23.23 9.68 -4.92 -0.05 -23.28 16 26 N -0.45 -15.03 2.82 -470.06 -1.32 -16.35 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.12 2.30 8.13 -2.38 -0.02 2.28 16 29 H 0.06 2.48 5.76 -2.39 -0.01 2.47 16 30 H 0.25 1.00 8.06 -2.91 -0.02 0.98 16 31 H 0.20 5.57 8.06 -2.91 -0.02 5.55 16 32 H -0.02 -1.17 7.13 -2.39 -0.02 -1.19 16 33 H 0.10 5.54 2.54 -109.90 -0.28 5.26 16 34 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.08 3.34 7.05 -2.39 -0.02 3.32 16 36 H 0.04 1.91 7.09 -2.39 -0.02 1.89 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.03 1.23 7.92 -2.38 -0.02 1.21 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.09 4.20 4.77 -2.39 -0.01 4.19 16 Total: -1.00 -79.55 342.14 3.67 -75.87 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.82 Total: 15.47 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: 7.44 Total: 29.46 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.19 Total: -118.33 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.12 Total: -53.43 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.31 Total: 3.91 kcal Total: -79.55 3.67 -75.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539625403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.105 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds