Wall clock time and date at job start Tue Mar 31 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 120.00069 * 2 1 4 4 N 1.46504 * 109.46973 * 124.99999 * 3 2 1 5 5 C 1.46493 * 119.99897 * 274.94896 * 4 3 2 6 6 C 1.50699 * 109.47230 * 263.11515 * 5 4 3 7 7 H 1.08003 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00205 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00117 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46977 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46908 * 120.00055 * 10 8 6 13 13 H 1.48500 * 109.47112 * 240.00216 * 10 8 6 14 14 C 1.34769 * 119.99915 * 94.95154 * 4 3 2 15 15 O 1.21373 * 120.00258 * 3.68453 * 14 4 3 16 16 C 1.49308 * 120.00287 * 183.68656 * 14 4 3 17 17 O 1.21385 * 119.99758 * 354.26267 * 16 14 4 18 18 N 1.34776 * 119.99971 * 174.53816 * 16 14 4 19 19 C 1.38748 * 119.99475 * 179.72097 * 18 16 14 20 20 N 1.28981 * 124.93506 * 359.70655 * 19 18 16 21 21 C 1.33630 * 117.64863 * 179.78101 * 20 19 18 22 22 C 1.33781 * 113.24070 * 0.47783 * 21 20 19 23 23 S 1.70737 * 124.92625 * 179.97438 * 19 18 16 24 24 C 1.51749 * 110.88358 * 179.79509 * 22 21 20 25 25 C 1.54300 * 104.80290 * 17.26157 * 24 22 21 26 26 C 1.52623 * 137.06883 * 180.11273 * 21 20 19 27 27 H 1.07999 * 119.99971 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99954 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00625 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46834 * 5.00258 * 3 2 1 31 31 H 1.08994 * 109.47353 * 245.00238 * 3 2 1 32 32 H 1.09003 * 109.47389 * 23.11693 * 5 4 3 33 33 H 1.09005 * 109.47341 * 143.11518 * 5 4 3 34 34 H 0.96999 * 120.00150 * 179.97438 * 9 8 6 35 35 H 0.96997 * 120.00454 * 359.72899 * 18 16 14 36 36 H 1.09000 * 110.36764 * 136.08928 * 24 22 21 37 37 H 1.08996 * 110.37057 * 258.31393 * 24 22 21 38 38 H 1.08997 * 110.97910 * 91.90093 * 25 24 22 39 39 H 1.09006 * 110.96851 * 215.63914 * 25 24 22 40 40 H 1.09007 * 110.32372 * 44.06435 * 26 21 20 41 41 H 1.08998 * 110.32147 * 281.86552 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5287 1.7632 2.4520 6 6 2.8688 3.2173 2.6542 7 1 3.3799 3.7656 1.8766 8 6 2.5276 3.8478 3.8319 9 7 1.9057 3.1801 4.7791 10 14 2.9498 5.6501 4.0828 11 1 3.6440 6.1684 2.8767 12 1 1.7024 6.4242 4.3064 13 1 3.8382 5.7906 5.2645 14 6 4.2773 0.9598 0.9574 15 8 4.6795 0.6668 -0.1496 16 6 5.2047 0.9081 2.1264 17 8 4.8333 1.2998 3.2136 18 7 6.4561 0.4316 1.9732 19 6 7.3198 0.3890 3.0583 20 7 7.0276 0.7841 4.2508 21 6 7.9717 0.6723 5.1899 22 6 9.1173 0.1584 4.7281 23 16 8.9258 -0.1882 3.0073 24 6 10.1509 0.0600 5.8348 25 6 9.3406 0.1775 7.1426 26 6 8.1099 0.9819 6.6780 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 1.4489 1.6300 2.5184 33 1 3.0165 1.1655 3.2221 34 1 1.6659 3.6236 5.6077 35 1 6.7530 0.1187 1.1045 36 1 10.6633 -0.9010 5.7910 37 1 10.8692 0.8761 5.7568 38 1 9.0479 -0.8060 7.5100 39 1 9.9012 0.7242 7.9010 40 1 7.2198 0.6567 7.2167 41 1 8.2759 2.0486 6.8288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556291511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:29 Heat of formation + Delta-G solvation = 37.067202 kcal Electronic energy + Delta-G solvation = -26431.792589 eV Core-core repulsion = 22633.865986 eV Total energy + Delta-G solvation = -3797.926603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67224 -39.84499 -38.15543 -36.29423 -35.72675 -34.00312 -33.21612 -32.06906 -28.45668 -27.91444 -27.53742 -26.48676 -24.77922 -23.14910 -22.15284 -21.21824 -20.56814 -19.54099 -18.51599 -17.99190 -16.97893 -16.50693 -16.43557 -15.97626 -15.75888 -15.23029 -15.15608 -14.49699 -14.30835 -14.17753 -14.00249 -13.42010 -13.16886 -12.89359 -12.85225 -12.66428 -12.30084 -12.18278 -11.68195 -11.53058 -11.34761 -11.29732 -11.18001 -11.14937 -10.91398 -10.82636 -10.49004 -10.16367 -10.00810 -9.67974 -9.46592 -9.18137 -9.08359 -8.63424 -8.24625 -7.99188 -7.84114 -6.01147 -4.04022 0.84806 0.94794 1.72956 2.08352 2.40914 2.82941 3.01114 3.31793 3.39583 3.42883 3.73635 3.87367 4.29340 4.47832 4.48004 4.80072 4.85185 4.98551 5.26359 5.35950 5.37449 5.43479 5.49183 5.58137 5.68878 5.76877 5.80282 5.85847 6.03109 6.07302 6.08681 6.21746 6.41610 6.58410 6.83209 6.97214 7.05496 7.35954 7.42099 7.86550 7.96782 8.07135 8.19723 8.33690 8.58812 8.97001 9.59276 11.07840 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.004193 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.851551 B = 6675.570077 C = 8563.989797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.138 3.862 4 N -0.552 5.552 5 C 0.222 3.778 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.513 3.487 15 O -0.561 6.561 16 C 0.480 3.520 17 O -0.378 6.378 18 N -0.623 5.623 19 C 0.295 3.705 20 N -0.466 5.466 21 C 0.087 3.913 22 C -0.282 4.282 23 S 0.123 5.877 24 C -0.028 4.028 25 C -0.114 4.114 26 C -0.043 4.043 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.262 0.738 35 H 0.427 0.573 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 -8.710 -1.264 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.281 5.281 5 C 0.103 3.897 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.295 3.705 15 O -0.443 6.443 16 C 0.258 3.742 17 O -0.238 6.238 18 N -0.279 5.279 19 C -0.075 4.075 20 N -0.187 5.187 21 C -0.044 4.044 22 C -0.404 4.404 23 S 0.376 5.624 24 C -0.068 4.068 25 C -0.154 4.154 26 C -0.083 4.083 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.266 0.734 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.292 -8.683 -1.606 15.135 hybrid contribution 0.028 1.186 0.502 1.288 sum 12.320 -7.497 -1.104 14.464 Atomic orbital electron populations 1.23803 0.95707 1.01808 1.00805 1.23286 0.96180 0.98872 0.99653 1.20630 0.92181 0.95420 0.90220 1.48270 1.07089 1.59202 1.13538 1.20131 0.96113 0.96581 0.76853 1.21234 1.38653 0.94500 1.01610 0.92733 1.24793 0.94808 0.98033 0.95476 1.69928 1.40017 1.36199 1.06334 0.86524 0.78027 0.85096 0.78243 1.19951 1.21009 1.20898 1.19579 0.83688 0.79487 0.87731 1.90656 1.76521 1.51770 1.25319 1.20629 0.82099 0.80637 0.90840 1.91060 1.71479 1.35642 1.25666 1.42915 1.11684 1.63372 1.09883 1.23170 0.93304 1.00744 0.90320 1.65617 1.33336 1.21393 0.98309 1.21420 0.87296 0.98508 0.97143 1.26660 1.03182 1.14199 0.96331 1.83470 1.09086 1.63706 1.06175 1.20552 0.94723 1.02377 0.89175 1.22345 0.95586 1.00979 0.96467 1.20895 0.99210 1.01215 0.86979 0.88254 0.88648 0.87676 0.89274 0.89289 0.94766 0.90855 0.92876 0.73425 0.90802 0.90181 0.90402 0.89629 0.89628 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 14.32 29.02 0.42 -2.12 16 2 C -0.16 -2.54 9.84 -36.02 -0.35 -2.89 16 3 C 0.14 2.47 5.90 -5.19 -0.03 2.44 16 4 N -0.55 -11.90 2.46 -177.00 -0.44 -12.33 16 5 C 0.22 5.63 4.79 -5.20 -0.02 5.61 16 6 C -0.52 -14.54 8.31 -34.44 -0.29 -14.83 16 7 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 9 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.51 10.83 7.66 -11.66 -0.09 10.74 16 15 O -0.56 -11.48 15.97 5.48 0.09 -11.39 16 16 C 0.48 10.26 7.72 -11.65 -0.09 10.17 16 17 O -0.38 -9.59 11.00 5.47 0.06 -9.53 16 18 N -0.62 -10.84 5.39 -13.75 -0.07 -10.91 16 19 C 0.30 5.14 7.99 -88.12 -0.70 4.44 16 20 N -0.47 -9.33 8.63 -10.50 -0.09 -9.42 16 21 C 0.09 1.42 7.69 -82.42 -0.63 0.79 16 22 C -0.28 -3.76 7.41 -35.35 -0.26 -4.02 16 23 S 0.12 1.58 23.22 -107.50 -2.50 -0.92 16 24 C -0.03 -0.26 6.80 -26.69 -0.18 -0.44 16 25 C -0.11 -0.98 7.12 -25.42 -0.18 -1.16 16 26 C -0.04 -0.54 6.81 -26.30 -0.18 -0.72 16 27 H 0.10 1.33 7.84 -52.49 -0.41 0.91 16 28 H 0.10 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.57 7.76 -51.93 -0.40 1.17 16 31 H 0.09 1.53 7.23 -51.93 -0.38 1.16 16 32 H 0.03 0.90 8.02 -51.93 -0.42 0.48 16 33 H 0.07 2.05 5.41 -51.93 -0.28 1.77 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.43 6.04 8.30 -40.82 -0.34 5.70 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -34.08 364.31 -9.60 -43.68 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.15 Total: 3.70 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -2.70 Total: 9.95 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.14 Total: -58.19 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.15 Total: -20.93 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.50 Total: -0.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.08 -9.60 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556291511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.744 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds