Wall clock time and date at job start Tue Mar 31 2020 18:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47196 * 2 1 4 4 N 1.46504 * 109.46843 * 120.00212 * 2 1 3 5 5 N 1.40061 * 126.03877 * 299.68531 * 4 2 1 6 6 C 1.30842 * 108.38645 * 179.81900 * 5 4 2 7 7 C 1.39779 * 108.32177 * 0.44125 * 6 5 4 8 8 C 1.35246 * 126.04077 * 119.99744 * 4 2 1 9 9 N 1.39210 * 126.22495 * 0.02562 * 8 4 2 10 10 S 1.65595 * 119.99948 * 186.41991 * 9 8 4 11 11 O 1.42108 * 106.39931 * 176.61965 * 10 9 8 12 12 O 1.42094 * 106.40222 * 309.53623 * 10 9 8 13 13 C 1.76205 * 107.22100 * 63.08139 * 10 9 8 14 14 C 1.38654 * 119.87220 * 264.22372 * 13 10 9 15 15 C 1.38611 * 120.50024 * 179.72195 * 14 13 10 16 16 C 1.37641 * 120.24877 * 0.54677 * 15 14 13 17 17 C 1.40705 * 119.74065 * 359.72743 * 16 15 14 18 18 C 1.41389 * 120.24052 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00066 * 207.42473 * 18 17 16 20 20 C 1.39950 * 120.00209 * 27.42845 * 18 17 16 21 21 N 1.30819 * 119.99967 * 11.20140 * 20 18 17 22 22 Si 1.86796 * 119.99917 * 191.20452 * 20 18 17 23 23 H 1.48507 * 109.47545 * 59.99969 * 22 20 18 24 24 H 1.48502 * 109.47047 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47327 * 299.99667 * 22 20 18 26 26 C 1.37593 * 119.87729 * 84.49046 * 13 10 9 27 27 H 1.08999 * 109.47291 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.47308 * 300.00426 * 1 2 3 29 29 H 1.08998 * 109.47828 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46621 * 239.99866 * 2 1 3 31 31 H 1.08993 * 109.47262 * 60.00451 * 3 2 1 32 32 H 1.09004 * 109.47038 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47044 * 299.99405 * 3 2 1 34 34 H 1.07994 * 125.84199 * 180.15767 * 6 5 4 35 35 H 1.08002 * 126.09467 * 179.69574 * 7 6 5 36 36 H 0.97004 * 119.99551 * 6.41696 * 9 8 4 37 37 H 1.08001 * 119.75042 * 359.97438 * 14 13 10 38 38 H 1.08002 * 119.87701 * 180.24772 * 15 14 13 39 39 H 1.07994 * 120.13347 * 179.74854 * 16 15 14 40 40 H 0.97006 * 120.00309 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.12478 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 7 1.7641 -0.3206 2.5229 6 6 2.3617 -1.1764 3.3118 7 6 3.0259 -2.1159 2.5182 8 6 2.7990 -1.7949 1.2145 9 7 3.2831 -2.4787 0.1027 10 16 4.0968 -3.9075 0.2991 11 8 4.3849 -4.3879 -1.0069 12 8 5.0988 -3.6674 1.2775 13 6 2.9683 -5.0565 1.0141 14 6 2.9539 -5.2469 2.3874 15 6 2.0677 -6.1431 2.9642 16 6 1.1987 -6.8632 2.1763 17 6 1.2084 -6.6823 0.7810 18 6 0.3198 -7.4161 -0.0384 19 1 0.5850 -7.6344 -1.0623 20 6 -0.9033 -7.8594 0.4774 21 7 -1.3245 -7.4164 1.6340 22 14 -1.9342 -9.0838 -0.4855 23 1 -1.1571 -10.3328 -0.6898 24 1 -3.1739 -9.3911 0.2722 25 1 -2.2910 -8.5016 -1.8042 26 6 2.1085 -5.7654 0.2070 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 2.3482 -1.1572 4.3915 35 1 3.6146 -2.9480 2.8754 36 1 3.1437 -2.1181 -0.7869 37 1 3.6356 -4.6896 3.0129 38 1 2.0625 -6.2806 4.0354 39 1 0.5118 -7.5640 2.6273 40 1 -2.1721 -7.7239 1.9918 41 1 2.1241 -5.6184 -0.8628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589585987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:35 Heat of formation + Delta-G solvation = 22.626613 kcal Electronic energy + Delta-G solvation = -27026.689192 eV Core-core repulsion = 23228.136398 eV Total energy + Delta-G solvation = -3798.552794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18455 -37.72282 -36.96104 -35.68891 -35.58403 -35.12357 -33.87084 -30.17461 -30.00274 -29.82407 -28.41906 -27.44296 -25.53509 -23.05137 -22.04016 -21.48246 -21.08868 -20.10860 -18.97711 -18.17094 -17.96399 -16.93949 -16.07552 -15.36618 -15.32031 -15.20006 -14.97063 -14.66908 -14.52587 -13.85456 -13.55290 -13.41701 -13.13034 -12.98607 -12.59785 -12.45271 -12.38938 -12.02482 -11.93514 -11.79549 -11.74891 -11.59956 -11.54125 -11.43749 -11.39700 -11.35535 -11.06517 -10.91846 -10.64850 -10.37410 -9.79309 -9.61402 -9.41761 -8.90098 -8.10283 -8.00252 -7.70141 -6.89999 -4.58940 0.61836 2.07307 2.09980 2.45811 2.60258 2.97934 3.00373 3.03879 3.08887 3.24196 3.81051 4.00611 4.32716 4.40048 4.71177 4.75074 4.80308 4.90035 5.03667 5.34470 5.36216 5.41686 5.52499 5.61084 5.70537 5.85008 5.93323 5.99580 6.03740 6.11314 6.36268 6.50223 6.59156 6.72191 6.79438 6.89897 7.02068 7.15491 7.25056 7.30161 7.68064 7.77053 7.88678 7.90510 8.36403 8.64330 8.67684 10.04267 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.004161 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.711620 B = 6727.199643 C = 7462.020146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 C -0.159 4.159 4 N -0.378 5.378 5 N -0.296 5.296 6 C 0.074 3.926 7 C -0.310 4.310 8 C 0.342 3.658 9 N -1.037 6.037 10 S 2.687 3.313 11 O -0.957 6.957 12 O -0.952 6.952 13 C -0.631 4.631 14 C -0.131 4.131 15 C -0.122 4.122 16 C -0.106 4.106 17 C 0.091 3.909 18 C -0.462 4.462 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.802 5.802 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.122 4.122 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.186 0.814 35 H 0.165 0.835 36 H 0.420 0.580 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.283 0.717 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 11.489 -1.259 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 C -0.217 4.217 4 N -0.167 5.167 5 N -0.118 5.118 6 C -0.112 4.112 7 C -0.343 4.343 8 C 0.119 3.881 9 N -0.784 5.784 10 S 2.784 3.216 11 O -0.947 6.947 12 O -0.942 6.942 13 C -0.725 4.725 14 C -0.152 4.152 15 C -0.142 4.142 16 C -0.126 4.126 17 C 0.087 3.913 18 C -0.492 4.492 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.427 5.427 22 Si 0.739 3.261 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.203 0.797 35 H 0.182 0.818 36 H 0.255 0.745 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.391 12.388 -1.435 12.698 hybrid contribution -0.903 -1.391 -0.611 1.767 sum 1.489 10.997 -2.046 11.285 Atomic orbital electron populations 1.22130 0.92983 1.03524 1.03266 1.21219 0.95964 0.93767 0.83710 1.22126 1.01687 0.94491 1.03401 1.48733 1.40303 1.21522 1.06114 1.77309 1.25270 1.24067 0.85131 1.23534 0.95267 0.92379 0.99988 1.21373 1.15141 1.08678 0.89112 1.17518 0.93736 0.88908 0.87958 1.53507 1.72406 1.40317 1.12150 1.02046 0.73984 0.71939 0.73669 1.93580 1.83454 1.78422 1.39292 1.93550 1.55088 1.84250 1.61360 1.29395 1.19691 1.19113 1.04270 1.20197 1.01146 1.02310 0.91588 1.20845 0.96925 0.98154 0.98254 1.21781 0.97558 0.99015 0.94227 1.17662 0.90847 0.90171 0.92609 1.19571 1.00514 1.29931 0.99154 0.90079 1.25910 0.98106 0.95361 0.95042 1.69725 1.19954 1.35754 1.17303 0.86251 0.78713 0.80944 0.80189 1.18714 1.20230 1.18927 1.20754 0.98340 0.97897 0.97353 0.90854 0.90895 0.91612 0.88963 0.90850 0.92139 0.90833 0.79681 0.81757 0.74538 0.86919 0.88055 0.85270 0.90562 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.46 37.16 0.35 -1.36 16 2 C 0.16 1.73 3.69 -67.93 -0.25 1.48 16 3 C -0.16 -1.46 9.45 37.16 0.35 -1.11 16 4 N -0.38 -5.55 3.28 -53.97 -0.18 -5.72 16 5 N -0.30 -4.55 12.41 30.61 0.38 -4.17 16 6 C 0.07 1.10 12.01 -17.40 -0.21 0.89 16 7 C -0.31 -5.15 8.87 -39.75 -0.35 -5.51 16 8 C 0.34 5.52 7.56 -153.41 -1.16 4.36 16 9 N -1.04 -15.69 5.86 31.10 0.18 -15.51 16 10 S 2.69 48.85 5.33 -107.50 -0.57 48.28 16 11 O -0.96 -18.97 17.42 -57.17 -1.00 -19.96 16 12 O -0.95 -18.45 15.26 -57.17 -0.87 -19.32 16 13 C -0.63 -13.32 5.66 -39.66 -0.22 -13.55 16 14 C -0.13 -2.73 8.31 -39.29 -0.33 -3.06 16 15 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 16 C -0.11 -2.57 8.67 -38.87 -0.34 -2.91 16 17 C 0.09 2.29 5.57 -106.83 -0.59 1.69 16 18 C -0.46 -11.63 9.07 -37.74 -0.34 -11.98 16 19 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 20 C 0.07 1.74 5.25 -17.34 -0.09 1.65 16 21 N -0.80 -19.62 10.77 55.55 0.60 -19.02 16 22 Si 0.91 17.90 29.57 -169.99 -5.03 12.88 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 C -0.12 -2.83 9.26 -38.88 -0.36 -3.19 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.86 6.83 -51.93 -0.35 0.51 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.17 2.79 3.98 -52.49 -0.21 2.58 16 36 H 0.42 4.96 7.68 -34.47 -0.26 4.69 16 37 H 0.11 2.09 5.63 -52.49 -0.30 1.80 16 38 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.13 3.21 6.13 -52.49 -0.32 2.89 16 40 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 41 H 0.11 2.40 7.74 -52.49 -0.41 1.99 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -30.71 353.21 -9.89 -40.59 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.78 Total: 12.28 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: -3.94 Total: -35.64 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.98 Total: -44.43 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.87 Total: -39.29 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 48.85 SS G_CDS: -0.57 Total: 48.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.71 -9.89 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589585987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.220 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds