Wall clock time and date at job start Tue Mar 31 2020 18:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30833 * 125.83637 * 2 1 4 4 N 1.40072 * 108.38699 * 180.26490 * 3 2 1 5 5 C 1.46501 * 126.04353 * 179.72108 * 4 3 2 6 6 C 1.35250 * 107.91455 * 359.71974 * 4 3 2 7 7 N 1.39204 * 126.22330 * 180.02562 * 6 4 3 8 8 S 1.65598 * 119.99906 * 69.79781 * 7 6 4 9 9 O 1.42103 * 106.40186 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40523 * 312.86351 * 8 7 6 11 11 C 1.76208 * 107.21670 * 66.40156 * 8 7 6 12 12 C 1.38652 * 119.87402 * 274.56673 * 11 8 7 13 13 C 1.38614 * 120.50067 * 179.72592 * 12 11 8 14 14 C 1.37638 * 120.24476 * 0.54629 * 13 12 11 15 15 C 1.40695 * 119.74661 * 359.72666 * 14 13 12 16 16 C 1.41403 * 120.24807 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99833 * 145.83060 * 16 15 14 18 18 C 1.39945 * 119.99719 * 325.83308 * 16 15 14 19 19 N 1.30825 * 120.00093 * 3.04856 * 18 16 15 20 20 Si 1.86797 * 119.99992 * 183.04660 * 18 16 15 21 21 H 1.48496 * 109.47030 * 59.99938 * 20 18 16 22 22 H 1.48504 * 109.47319 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47255 * 300.00088 * 20 18 16 24 24 C 1.37596 * 119.87036 * 94.83713 * 11 8 7 25 25 C 1.36178 * 107.55848 * 0.02562 * 6 4 3 26 26 C 1.50700 * 126.09254 * 180.02562 * 25 6 4 27 27 H 1.09004 * 109.47081 * 270.21210 * 1 2 3 28 28 H 1.09004 * 109.47525 * 30.20418 * 1 2 3 29 29 H 1.09003 * 109.47712 * 150.20676 * 1 2 3 30 30 H 1.09000 * 109.46772 * 276.68087 * 5 4 3 31 31 H 1.09000 * 109.46693 * 36.67852 * 5 4 3 32 32 H 1.09001 * 109.46979 * 156.67916 * 5 4 3 33 33 H 0.97001 * 119.99963 * 249.80642 * 7 6 4 34 34 H 1.07997 * 119.75037 * 359.97438 * 12 11 8 35 35 H 1.07999 * 119.87861 * 180.25371 * 13 12 11 36 36 H 1.08000 * 120.13084 * 179.75409 * 14 13 12 37 37 H 0.96993 * 120.00207 * 179.97438 * 19 18 16 38 38 H 1.07990 * 120.13663 * 359.97438 * 24 11 8 39 39 H 1.09005 * 109.46743 * 90.00040 * 26 25 6 40 40 H 1.08996 * 109.46760 * 210.00095 * 26 25 6 41 41 H 1.08998 * 109.47116 * 329.99979 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0607 0.0000 4 7 3.6092 0.6406 -0.0061 5 6 4.7868 1.5122 -0.0140 6 6 3.6202 -0.7118 -0.0036 7 7 4.7499 -1.5253 -0.0073 8 16 5.7176 -1.6046 1.3341 9 8 6.7692 -2.5064 1.0175 10 8 5.9423 -0.2635 1.7467 11 6 4.7750 -2.3671 2.6128 12 6 3.9349 -1.5983 3.4037 13 6 3.1833 -2.1855 4.4095 14 6 3.2722 -3.5394 4.6409 15 6 4.1256 -4.3285 3.8482 16 6 4.2247 -5.7205 4.0764 17 1 4.3820 -6.3938 3.2468 18 6 4.1188 -6.2256 5.3772 19 7 3.8688 -5.4168 6.3746 20 14 4.3345 -8.0546 5.6894 21 1 5.6892 -8.4753 5.2503 22 1 4.1754 -8.3314 7.1397 23 1 3.3096 -8.8113 4.9262 24 6 4.8798 -3.7224 2.8262 25 6 2.3253 -1.1332 0.0034 26 6 1.8579 -2.5659 0.0090 27 1 -0.3633 0.0038 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 5.0023 1.8225 -1.0364 31 1 4.5916 2.3920 0.5992 32 1 5.6423 0.9706 0.3895 33 1 4.9702 -2.0455 -0.7958 34 1 3.8626 -0.5345 3.2323 35 1 2.5291 -1.5777 5.0170 36 1 2.6887 -3.9944 5.4277 37 1 3.7951 -5.7669 7.2762 38 1 5.5377 -4.3187 2.2116 39 1 1.7500 -2.9088 1.0381 40 1 0.8968 -2.6364 -0.5002 41 1 2.5889 -3.1885 -0.5067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589586693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:19 Heat of formation + Delta-G solvation = 21.279779 kcal Electronic energy + Delta-G solvation = -27322.864884 eV Core-core repulsion = 23524.253687 eV Total energy + Delta-G solvation = -3798.611197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29907 -37.71780 -37.00994 -35.68128 -35.25546 -33.96022 -33.77900 -30.50740 -30.09692 -29.87874 -29.53108 -26.66979 -25.50364 -24.37529 -21.99098 -21.09888 -20.92102 -19.79116 -19.13270 -18.11717 -17.49560 -17.22630 -15.97139 -15.56041 -15.24139 -15.22607 -14.92118 -14.67199 -13.74392 -13.56679 -13.51783 -13.38239 -13.07755 -12.79709 -12.61906 -12.58159 -12.46612 -12.24758 -12.02260 -11.85352 -11.81456 -11.72795 -11.53145 -11.28725 -11.27068 -11.05361 -10.94665 -10.89137 -10.60174 -10.09833 -9.81865 -9.63817 -9.35540 -8.91598 -8.12128 -8.05444 -7.63178 -6.79927 -4.59574 0.60407 1.85317 2.07493 2.49426 2.60124 2.77951 3.01471 3.02909 3.07726 3.30073 3.86209 3.97312 4.46861 4.55579 4.65707 5.04466 5.18316 5.31291 5.31967 5.36928 5.47564 5.63443 5.64542 5.86806 5.89143 5.98441 6.00128 6.06999 6.09315 6.27317 6.34457 6.57088 6.62133 6.73917 6.80115 6.81839 7.08132 7.16164 7.23482 7.29716 7.67074 7.80281 7.80724 7.93218 8.38745 8.67303 8.71875 10.12925 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.004073 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.650239 B = 6872.984006 C = 7663.919432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.075 3.925 3 N -0.280 5.280 4 N -0.362 5.362 5 C 0.077 3.923 6 C 0.296 3.704 7 N -1.039 6.039 8 S 2.675 3.325 9 O -0.958 6.958 10 O -0.964 6.964 11 C -0.632 4.632 12 C -0.121 4.121 13 C -0.127 4.127 14 C -0.097 4.097 15 C 0.087 3.913 16 C -0.464 4.464 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.814 5.814 20 Si 0.919 3.081 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.113 4.113 25 C -0.209 4.209 26 C -0.075 4.075 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.427 0.573 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.282 0.718 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 6.372 -10.625 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 N -0.105 5.105 4 N -0.148 5.148 5 C -0.064 4.064 6 C 0.075 3.925 7 N -0.794 5.794 8 S 2.774 3.226 9 O -0.948 6.948 10 O -0.954 6.954 11 C -0.726 4.726 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.117 4.117 15 C 0.084 3.916 16 C -0.494 4.494 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.441 5.441 20 Si 0.743 3.257 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.135 4.135 25 C -0.224 4.224 26 C -0.133 4.133 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.266 0.734 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.947 8.121 -10.220 13.382 hybrid contribution -0.103 -2.035 0.303 2.060 sum -3.050 6.086 -9.917 12.028 Atomic orbital electron populations 1.20173 0.86615 1.03013 1.03164 1.22007 0.96838 0.90021 1.00162 1.77330 0.85470 1.22069 1.25635 1.48687 1.05915 1.03711 1.56487 1.22414 0.85643 0.95788 1.02589 1.16968 0.87576 0.81828 1.06089 1.52855 1.38749 1.55220 1.32543 1.02279 0.73277 0.73935 0.73074 1.93572 1.51968 1.65495 1.83761 1.93420 1.84383 1.36117 1.81469 1.29366 1.19133 1.05221 1.18901 1.20068 0.99136 0.96948 0.98084 1.20870 1.00016 0.95780 0.97971 1.21957 0.97220 0.92388 1.00144 1.17696 0.89386 0.93893 0.90615 1.19506 1.44312 0.92076 0.93547 0.90180 1.25882 0.92390 1.00417 0.95800 1.69668 1.36745 1.36683 1.00966 0.86188 0.80004 0.81605 0.77886 1.18912 1.20322 1.18884 1.20888 0.99507 0.90999 1.02070 1.19792 0.90318 0.97168 1.15091 1.20097 1.00452 0.89932 1.02775 0.90334 0.91109 0.90372 0.91464 0.89435 0.86295 0.73397 0.88126 0.88273 0.84643 0.90714 0.86798 0.90857 0.91904 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.26 36.01 0.37 -0.37 16 2 C 0.07 1.08 7.21 -82.44 -0.59 0.48 16 3 N -0.28 -4.44 12.56 33.65 0.42 -4.01 16 4 N -0.36 -5.66 4.02 -67.24 -0.27 -5.93 16 5 C 0.08 1.02 11.03 59.85 0.66 1.68 16 6 C 0.30 4.59 6.89 -153.41 -1.06 3.53 16 7 N -1.04 -14.99 5.61 31.11 0.17 -14.81 16 8 S 2.68 47.99 5.68 -107.50 -0.61 47.38 16 9 O -0.96 -18.95 17.16 -57.18 -0.98 -19.93 16 10 O -0.96 -18.09 13.49 -57.18 -0.77 -18.86 16 11 C -0.63 -13.37 5.92 -39.66 -0.23 -13.61 16 12 C -0.12 -2.59 9.53 -39.29 -0.37 -2.96 16 13 C -0.13 -2.79 10.02 -39.66 -0.40 -3.19 16 14 C -0.10 -2.35 8.67 -38.87 -0.34 -2.68 16 15 C 0.09 2.19 5.55 -106.82 -0.59 1.59 16 16 C -0.46 -11.61 9.05 -37.74 -0.34 -11.95 16 17 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 18 C 0.07 1.69 5.41 -17.34 -0.09 1.60 16 19 N -0.81 -20.12 10.61 55.55 0.59 -19.53 16 20 Si 0.92 18.11 29.56 -169.99 -5.02 13.08 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.11 -2.62 9.27 -38.87 -0.36 -2.98 16 25 C -0.21 -3.11 6.13 -104.79 -0.64 -3.75 16 26 C -0.07 -0.99 10.13 36.01 0.36 -0.62 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.67 7.25 -51.93 -0.38 0.29 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 1.69 4.52 -51.93 -0.23 1.45 16 33 H 0.43 4.82 8.95 -34.47 -0.31 4.51 16 34 H 0.10 2.06 7.71 -52.49 -0.40 1.65 16 35 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.14 3.37 6.14 -52.49 -0.32 3.05 16 37 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.11 2.52 7.50 -52.49 -0.39 2.12 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.67 7.25 -51.93 -0.38 0.29 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -30.33 357.45 -9.64 -39.97 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.92 Total: 10.49 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -3.63 Total: -33.23 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.92 Total: -44.28 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.75 Total: -38.79 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.08 kcal Atomic # 16 Polarization: 47.99 SS G_CDS: -0.61 Total: 47.38 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.33 -9.64 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589586693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.253 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds