Wall clock time and date at job start Tue Mar 31 2020 18:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30833 * 125.83637 * 2 1 4 4 N 1.40072 * 108.38699 * 180.26490 * 3 2 1 5 5 C 1.46501 * 126.04353 * 179.72108 * 4 3 2 6 6 C 1.35250 * 107.91455 * 359.71974 * 4 3 2 7 7 N 1.39204 * 126.22330 * 180.02562 * 6 4 3 8 8 S 1.65598 * 119.99906 * 69.79781 * 7 6 4 9 9 O 1.42103 * 106.40186 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40523 * 312.86351 * 8 7 6 11 11 C 1.76208 * 107.21670 * 66.40156 * 8 7 6 12 12 C 1.38652 * 119.87402 * 274.56673 * 11 8 7 13 13 C 1.38614 * 120.50067 * 179.72592 * 12 11 8 14 14 C 1.37638 * 120.24476 * 0.54629 * 13 12 11 15 15 C 1.40695 * 119.74661 * 359.72666 * 14 13 12 16 16 C 1.41403 * 120.24807 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99833 * 145.83060 * 16 15 14 18 18 C 1.39945 * 119.99719 * 325.83308 * 16 15 14 19 19 N 1.30825 * 120.00093 * 3.04856 * 18 16 15 20 20 Si 1.86797 * 119.99992 * 183.04660 * 18 16 15 21 21 H 1.48496 * 109.47030 * 59.99938 * 20 18 16 22 22 H 1.48504 * 109.47319 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47255 * 300.00088 * 20 18 16 24 24 C 1.37596 * 119.87036 * 94.83713 * 11 8 7 25 25 C 1.36178 * 107.55848 * 0.02562 * 6 4 3 26 26 C 1.50700 * 126.09254 * 180.02562 * 25 6 4 27 27 H 1.09004 * 109.47081 * 270.21210 * 1 2 3 28 28 H 1.09004 * 109.47525 * 30.20418 * 1 2 3 29 29 H 1.09003 * 109.47712 * 150.20676 * 1 2 3 30 30 H 1.09000 * 109.46772 * 276.68087 * 5 4 3 31 31 H 1.09000 * 109.46693 * 36.67852 * 5 4 3 32 32 H 1.09001 * 109.46979 * 156.67916 * 5 4 3 33 33 H 0.97001 * 119.99963 * 249.80642 * 7 6 4 34 34 H 1.07997 * 119.75037 * 359.97438 * 12 11 8 35 35 H 1.07999 * 119.87861 * 180.25371 * 13 12 11 36 36 H 1.08000 * 120.13084 * 179.75409 * 14 13 12 37 37 H 0.96993 * 120.00207 * 179.97438 * 19 18 16 38 38 H 1.07990 * 120.13663 * 359.97438 * 24 11 8 39 39 H 1.09005 * 109.46743 * 90.00040 * 26 25 6 40 40 H 1.08996 * 109.46760 * 210.00095 * 26 25 6 41 41 H 1.08998 * 109.47116 * 329.99979 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0607 0.0000 4 7 3.6092 0.6406 -0.0061 5 6 4.7868 1.5122 -0.0140 6 6 3.6202 -0.7118 -0.0036 7 7 4.7499 -1.5253 -0.0073 8 16 5.7176 -1.6046 1.3341 9 8 6.7692 -2.5064 1.0175 10 8 5.9423 -0.2635 1.7467 11 6 4.7750 -2.3671 2.6128 12 6 3.9349 -1.5983 3.4037 13 6 3.1833 -2.1855 4.4095 14 6 3.2722 -3.5394 4.6409 15 6 4.1256 -4.3285 3.8482 16 6 4.2247 -5.7205 4.0764 17 1 4.3820 -6.3938 3.2468 18 6 4.1188 -6.2256 5.3772 19 7 3.8688 -5.4168 6.3746 20 14 4.3345 -8.0546 5.6894 21 1 5.6892 -8.4753 5.2503 22 1 4.1754 -8.3314 7.1397 23 1 3.3096 -8.8113 4.9262 24 6 4.8798 -3.7224 2.8262 25 6 2.3253 -1.1332 0.0034 26 6 1.8579 -2.5659 0.0090 27 1 -0.3633 0.0038 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 5.0023 1.8225 -1.0364 31 1 4.5916 2.3920 0.5992 32 1 5.6423 0.9706 0.3895 33 1 4.9702 -2.0455 -0.7958 34 1 3.8626 -0.5345 3.2323 35 1 2.5291 -1.5777 5.0170 36 1 2.6887 -3.9944 5.4277 37 1 3.7951 -5.7669 7.2762 38 1 5.5377 -4.3187 2.2116 39 1 1.7500 -2.9088 1.0381 40 1 0.8968 -2.6364 -0.5002 41 1 2.5889 -3.1885 -0.5067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589586693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:18 Heat of formation + Delta-G solvation = 2.884787 kcal Electronic energy + Delta-G solvation = -27323.662551 eV Core-core repulsion = 23524.253687 eV Total energy + Delta-G solvation = -3799.408864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42912 -39.49091 -38.53318 -37.20588 -36.47269 -35.60372 -35.01910 -31.90343 -31.66047 -31.59167 -30.47612 -27.75438 -27.33420 -25.41425 -23.71459 -22.86250 -22.18237 -20.95959 -20.52617 -19.67404 -18.93614 -18.48156 -17.72196 -16.90151 -16.83813 -16.50048 -16.36291 -16.18488 -15.26662 -15.15073 -14.75377 -14.52394 -14.32231 -14.13239 -13.92510 -13.81012 -13.76496 -13.54924 -13.40045 -13.28047 -13.20872 -12.93116 -12.89743 -12.79183 -12.78398 -12.70818 -12.42259 -12.20996 -12.11499 -11.57913 -11.43836 -11.14614 -11.11202 -10.06678 -9.85615 -9.45998 -9.22019 -8.58937 -6.48352 -0.86989 0.34710 0.70030 0.82685 1.33973 1.40397 1.48867 1.51997 1.67072 1.92528 2.21563 2.45559 2.70744 3.20155 3.46454 3.53028 3.92126 4.16688 4.26494 4.31983 4.33221 4.39559 4.46804 4.61762 4.81584 4.83485 4.84853 4.90630 4.99277 5.00581 5.03437 5.15540 5.23647 5.25548 5.28671 5.39204 5.50448 5.60895 5.78087 5.86650 5.98517 6.09507 6.10337 6.54252 6.67978 6.84376 6.86646 8.35361 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.004073 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.650239 B = 6872.984006 C = 7663.919432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.071 3.929 3 N -0.299 5.299 4 N -0.371 5.371 5 C 0.069 3.931 6 C 0.280 3.720 7 N -1.021 6.021 8 S 2.708 3.292 9 O -0.974 6.974 10 O -0.968 6.968 11 C -0.640 4.640 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.117 4.117 15 C 0.061 3.939 16 C -0.497 4.497 17 H 0.082 0.918 18 C 0.030 3.970 19 N -0.843 5.843 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.126 4.126 25 C -0.216 4.216 26 C -0.074 4.074 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.443 0.557 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.287 0.713 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 6.573 -11.808 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 N -0.124 5.124 4 N -0.157 5.157 5 C -0.072 4.072 6 C 0.059 3.941 7 N -0.780 5.780 8 S 2.803 3.197 9 O -0.964 6.964 10 O -0.958 6.958 11 C -0.730 4.730 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.138 4.138 15 C 0.058 3.942 16 C -0.527 4.527 17 H 0.100 0.900 18 C -0.182 4.182 19 N -0.470 5.470 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.147 4.147 25 C -0.232 4.232 26 C -0.132 4.132 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.285 0.715 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.471 8.315 -11.388 14.521 hybrid contribution 0.033 -1.940 0.576 2.024 sum -3.438 6.375 -10.812 13.014 Atomic orbital electron populations 1.20338 0.84029 1.04655 1.03939 1.22628 0.98505 0.89357 0.98912 1.77309 0.85767 1.22926 1.26446 1.48890 1.06352 1.03870 1.56555 1.22571 0.84620 0.95534 1.04447 1.17153 0.87792 0.82143 1.07051 1.52344 1.38393 1.55308 1.31913 1.01408 0.72502 0.73125 0.72635 1.93549 1.52740 1.66148 1.83941 1.93429 1.84391 1.35942 1.82005 1.29886 1.18541 1.04650 1.19940 1.20259 0.98769 0.97511 0.97662 1.21115 1.00160 0.95240 0.98186 1.21894 0.97976 0.93378 1.00504 1.18022 0.90092 0.94512 0.91569 1.19797 1.45928 0.92542 0.94447 0.89997 1.26725 0.91563 1.04772 0.95148 1.69744 1.37286 1.38541 1.01450 0.85161 0.79913 0.76083 0.78055 1.18848 1.19509 1.17980 1.20969 0.99750 0.92036 1.01975 1.20104 0.90329 0.98048 1.14683 1.20133 1.02190 0.89090 1.01791 0.89853 0.89904 0.88358 0.88770 0.88892 0.87287 0.71478 0.86916 0.86058 0.85995 0.90202 0.86515 0.93056 0.89174 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.26 71.24 0.73 -0.57 16 2 C 0.07 1.90 7.21 43.08 0.31 2.21 16 3 N -0.30 -8.97 12.56 -47.45 -0.60 -9.57 16 4 N -0.37 -10.94 4.02 -366.64 -1.47 -12.42 16 5 C 0.07 1.70 11.03 127.77 1.41 3.11 16 6 C 0.28 8.21 6.89 131.43 0.90 9.11 16 7 N -1.02 -27.93 5.61 -55.50 -0.31 -28.24 16 8 S 2.71 94.34 5.68 -56.49 -0.32 94.02 16 9 O -0.97 -37.61 17.16 -128.00 -2.20 -39.81 16 10 O -0.97 -35.06 13.49 -128.00 -1.73 -36.78 16 11 C -0.64 -26.93 5.92 22.22 0.13 -26.80 16 12 C -0.12 -5.13 9.53 22.46 0.21 -4.92 16 13 C -0.13 -5.65 10.02 22.22 0.22 -5.43 16 14 C -0.12 -5.84 8.67 22.73 0.20 -5.64 16 15 C 0.06 3.14 5.55 -21.29 -0.12 3.02 16 16 C -0.50 -25.51 9.05 23.46 0.21 -25.30 16 17 H 0.08 4.00 7.85 -2.91 -0.02 3.97 16 18 C 0.03 1.47 5.41 85.26 0.46 1.94 16 19 N -0.84 -42.55 10.61 21.83 0.23 -42.31 16 20 Si 0.99 37.13 29.56 68.60 2.03 39.16 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 24 C -0.13 -5.93 9.27 22.73 0.21 -5.72 16 25 C -0.22 -6.08 6.13 -19.97 -0.12 -6.20 16 26 C -0.07 -1.85 10.13 71.24 0.72 -1.13 16 27 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.10 1.37 7.25 -2.39 -0.02 1.36 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.11 2.91 4.52 -2.39 -0.01 2.90 16 33 H 0.44 9.22 8.95 -96.74 -0.87 8.35 16 34 H 0.11 4.48 7.71 -2.91 -0.02 4.45 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.12 6.32 6.14 -2.91 -0.02 6.30 16 37 H 0.29 13.25 8.30 -92.71 -0.77 12.49 16 38 H 0.12 5.26 7.50 -2.92 -0.02 5.24 16 39 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.09 1.70 7.25 -2.39 -0.02 1.68 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.18 357.45 1.34 -63.84 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.22 Total: 34.41 kcal Atomic # 6 Polarization: -67.79 SS G_CDS: 5.49 Total: -62.30 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -2.15 Total: -92.54 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -3.92 Total: -76.59 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 94.34 SS G_CDS: -0.32 Total: 94.02 kcal Total: -65.18 1.34 -63.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589586693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.726 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds