Wall clock time and date at job start Tue Mar 31 2020 19:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 N 1.46499 * 109.47343 * 120.00326 * 2 1 3 5 5 S 1.65606 * 120.00010 * 264.99736 * 4 2 1 6 6 O 1.42098 * 106.40167 * 178.53723 * 5 4 2 7 7 O 1.42100 * 106.39957 * 311.45957 * 5 4 2 8 8 C 1.76206 * 107.21560 * 64.99648 * 5 4 2 9 9 C 1.38655 * 119.87359 * 269.72964 * 8 5 4 10 10 C 1.38617 * 120.49708 * 179.72795 * 9 8 5 11 11 C 1.37640 * 120.24446 * 0.54164 * 10 9 8 12 12 C 1.40694 * 119.74709 * 359.73687 * 11 10 9 13 13 C 1.41397 * 120.24256 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00179 * 155.25255 * 13 12 11 15 15 C 1.39946 * 120.00353 * 335.25893 * 13 12 11 16 16 N 1.30829 * 119.99445 * 342.23360 * 15 13 12 17 17 Si 1.86796 * 120.00278 * 162.23910 * 15 13 12 18 18 H 1.48493 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47178 * 119.99733 * 17 15 13 20 20 H 1.48506 * 109.47066 * 239.99710 * 17 15 13 21 21 C 1.37595 * 119.87395 * 90.00514 * 8 5 4 22 22 C 1.50707 * 109.47001 * 240.00173 * 2 1 3 23 23 C 1.39860 * 125.89980 * 85.02448 * 22 2 1 24 24 C 1.35323 * 107.92094 * 179.97438 * 23 22 2 25 25 N 1.34940 * 107.74500 * 0.02562 * 24 23 22 26 26 C 1.46498 * 126.03909 * 180.02562 * 25 24 23 27 27 N 1.30845 * 125.89447 * 265.02334 * 22 2 1 28 28 H 1.08999 * 109.47006 * 59.99446 * 1 2 3 29 29 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46580 * 299.99931 * 1 2 3 31 31 H 0.97000 * 120.00288 * 84.99491 * 4 2 1 32 32 H 1.07997 * 119.75243 * 359.97438 * 9 8 5 33 33 H 1.07998 * 119.87683 * 180.25682 * 10 9 8 34 34 H 1.08004 * 120.12567 * 179.75144 * 11 10 9 35 35 H 0.97002 * 119.99559 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.12755 * 359.97050 * 21 8 5 37 37 H 1.07999 * 126.04433 * 0.02562 * 23 22 2 38 38 H 1.08000 * 126.12859 * 179.97438 * 24 23 22 39 39 H 1.09001 * 109.47258 * 269.99935 * 26 25 24 40 40 H 1.09002 * 109.47121 * 29.99658 * 26 25 24 41 41 H 1.09001 * 109.47593 * 150.00002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4123 0.1771 2.5505 6 8 2.8125 -0.7699 3.5314 7 8 3.2438 1.2442 2.1155 8 6 0.9276 0.9147 3.1474 9 6 0.5560 2.1750 2.7046 10 6 -0.6121 2.7651 3.1614 11 6 -1.4111 2.1087 4.0698 12 6 -1.0410 0.8319 4.5305 13 6 -1.8542 0.1480 5.4633 14 1 -1.8209 -0.9300 5.5206 15 6 -2.7025 0.8678 6.3123 16 7 -2.5073 2.1477 6.5003 17 14 -4.1132 0.0012 7.1773 18 1 -4.1181 -1.4349 6.7996 19 1 -3.9442 0.1263 8.6473 20 1 -5.3993 0.6235 6.7722 21 6 0.1442 0.2403 4.0556 22 6 2.0323 -0.7104 -1.2305 23 6 2.2130 -0.1359 -2.4928 24 6 2.6767 -1.0968 -3.3252 25 7 2.7850 -2.2390 -2.6148 26 6 3.2505 -3.5308 -3.1255 27 7 2.3747 -1.9712 -1.3024 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.1110 -1.6562 1.1948 32 1 1.1794 2.6992 1.9954 33 1 -0.8940 3.7454 2.8066 34 1 -2.3188 2.5720 4.4275 35 1 -3.0950 2.6466 7.0891 36 1 0.4376 -0.7396 4.4022 37 1 2.0178 0.8930 -2.7566 38 1 2.9163 -0.9722 -4.3708 39 1 2.4010 -4.0993 -3.5041 40 1 3.9658 -3.3665 -3.9315 41 1 3.7310 -4.0878 -2.3212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:05 Heat of formation + Delta-G solvation = 20.862096 kcal Electronic energy + Delta-G solvation = -26326.804652 eV Core-core repulsion = 22528.175343 eV Total energy + Delta-G solvation = -3798.629309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30449 -37.64368 -36.75164 -36.20055 -35.23070 -33.81992 -32.94091 -30.16294 -30.06012 -29.82208 -29.56803 -26.71393 -25.45467 -23.21369 -21.85685 -21.31794 -20.96767 -19.79976 -19.00052 -17.93938 -17.43111 -16.68288 -15.95108 -15.79027 -15.61381 -15.10094 -14.82253 -14.49931 -14.13402 -13.75742 -13.59088 -13.38405 -13.33494 -13.19133 -12.70440 -12.68745 -12.56021 -12.16099 -11.83855 -11.53550 -11.48556 -11.40739 -11.35631 -11.32415 -11.08525 -10.94756 -10.82430 -10.72679 -10.55556 -9.82623 -9.68363 -9.37130 -9.32613 -9.13273 -8.66691 -7.99824 -7.66537 -6.89846 -4.50423 1.07371 1.76394 2.22960 2.35250 2.65373 2.69041 3.02267 3.05954 3.08999 3.60801 3.85508 4.27430 4.30715 4.48467 4.60124 4.72763 4.87371 5.05087 5.11321 5.15464 5.36895 5.41335 5.51494 5.61230 5.65631 5.83110 6.03282 6.08170 6.21154 6.32943 6.42304 6.57268 6.69761 6.79237 6.86108 6.88727 7.06337 7.23696 7.30442 7.41969 7.64671 7.75388 7.83890 7.97401 8.43352 8.69961 8.74866 10.05906 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.003032 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.648952 B = 9232.498050 C = 9522.281731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.236 3.764 3 H 0.109 0.891 4 N -1.113 6.113 5 S 2.687 3.313 6 O -0.971 6.971 7 O -0.975 6.975 8 C -0.630 4.630 9 C -0.147 4.147 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.092 3.908 13 C -0.460 4.460 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.794 5.794 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.271 1.271 21 C -0.121 4.121 22 C 0.079 3.921 23 C -0.262 4.262 24 C 0.051 3.949 25 N -0.380 5.380 26 C 0.103 3.897 27 N -0.286 5.286 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.283 0.717 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -5.386 -18.027 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.127 3.873 3 H 0.127 0.873 4 N -0.871 5.871 5 S 2.783 3.217 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.722 4.722 9 C -0.169 4.169 10 C -0.139 4.139 11 C -0.138 4.138 12 C 0.088 3.912 13 C -0.489 4.489 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.419 5.419 17 Si 0.735 3.265 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.143 4.143 22 C -0.089 4.089 23 C -0.292 4.292 24 C -0.094 4.094 25 N -0.162 5.162 26 C -0.039 4.039 27 N -0.108 5.108 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.169 0.831 38 H 0.191 0.809 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.748 -6.194 -16.977 18.964 hybrid contribution -1.427 0.200 -0.086 1.444 sum 4.321 -5.994 -17.063 18.594 Atomic orbital electron populations 1.22373 0.93325 1.03395 1.03937 1.19093 0.94326 0.94886 0.79043 0.87291 1.55601 1.84111 1.20049 1.27303 1.01707 0.74812 0.73104 0.72046 1.93539 1.82048 1.62500 1.58063 1.93510 1.65360 1.55876 1.81757 1.29722 1.21891 1.07112 1.13433 1.20072 0.98747 0.94206 1.03846 1.20799 0.95666 0.98565 0.98908 1.21626 0.99700 0.96523 0.95943 1.17672 0.90207 0.92162 0.91129 1.19638 1.18900 0.95090 1.15317 0.89941 1.25931 0.97751 0.94794 0.95858 1.69796 1.33822 1.08670 1.29604 0.86213 0.80427 0.80837 0.79033 1.18258 1.19882 1.19653 1.20751 0.94553 0.99836 0.99112 1.22381 0.98776 0.91793 0.95969 1.21369 1.13760 1.01360 0.92732 1.22498 1.01806 0.86416 0.98727 1.48507 1.51293 1.09107 1.07309 1.21828 1.00129 0.81787 1.00134 1.77256 1.20653 1.16453 0.96477 0.91343 0.91891 0.89579 0.74659 0.87543 0.88398 0.85851 0.90650 0.87083 0.83124 0.80941 0.90860 0.89625 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.50 37.16 0.35 -1.97 16 2 C 0.24 3.37 3.39 -69.08 -0.23 3.13 16 3 H 0.11 1.50 7.50 -51.93 -0.39 1.11 16 4 N -1.11 -17.76 5.45 -5.88 -0.03 -17.79 16 5 S 2.69 52.33 5.72 -107.50 -0.61 51.72 16 6 O -0.97 -21.43 17.27 -57.17 -0.99 -22.42 16 7 O -0.98 -20.42 16.60 -57.17 -0.95 -21.37 16 8 C -0.63 -13.57 5.05 -39.66 -0.20 -13.77 16 9 C -0.15 -3.09 8.61 -39.29 -0.34 -3.43 16 10 C -0.12 -2.61 10.02 -39.66 -0.40 -3.01 16 11 C -0.12 -2.88 8.70 -38.87 -0.34 -3.22 16 12 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 13 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 14 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 15 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.81 10.97 55.55 0.61 -19.20 16 17 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.12 -2.89 9.26 -38.88 -0.36 -3.25 16 22 C 0.08 1.08 6.19 -82.40 -0.51 0.57 16 23 C -0.26 -2.91 10.74 -40.01 -0.43 -3.34 16 24 C 0.05 0.47 11.49 -17.22 -0.20 0.27 16 25 N -0.38 -4.02 4.01 -68.16 -0.27 -4.30 16 26 C 0.10 0.62 11.47 59.85 0.69 1.31 16 27 N -0.29 -4.00 11.93 33.67 0.40 -3.59 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.33 6.18 -51.92 -0.32 1.01 16 31 H 0.42 6.28 8.33 -34.47 -0.29 6.00 16 32 H 0.11 1.99 7.59 -52.49 -0.40 1.59 16 33 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 3.08 6.18 -52.48 -0.32 2.76 16 35 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 36 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 37 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -33.08 361.50 -9.47 -42.55 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.05 Total: 11.22 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -2.99 Total: -35.36 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.71 Total: -44.88 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.94 Total: -43.79 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 52.33 SS G_CDS: -0.61 Total: 51.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.08 -9.47 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.417 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds