Wall clock time and date at job start Tue Mar 31 2020 19:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 N 1.46499 * 109.47343 * 120.00326 * 2 1 3 5 5 S 1.65606 * 120.00010 * 264.99736 * 4 2 1 6 6 O 1.42098 * 106.40167 * 178.53723 * 5 4 2 7 7 O 1.42100 * 106.39957 * 311.45957 * 5 4 2 8 8 C 1.76206 * 107.21560 * 64.99648 * 5 4 2 9 9 C 1.38655 * 119.87359 * 269.72964 * 8 5 4 10 10 C 1.38617 * 120.49708 * 179.72795 * 9 8 5 11 11 C 1.37640 * 120.24446 * 0.54164 * 10 9 8 12 12 C 1.40694 * 119.74709 * 359.73687 * 11 10 9 13 13 C 1.41397 * 120.24256 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00179 * 155.25255 * 13 12 11 15 15 C 1.39946 * 120.00353 * 335.25893 * 13 12 11 16 16 N 1.30829 * 119.99445 * 342.23360 * 15 13 12 17 17 Si 1.86796 * 120.00278 * 162.23910 * 15 13 12 18 18 H 1.48493 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47178 * 119.99733 * 17 15 13 20 20 H 1.48506 * 109.47066 * 239.99710 * 17 15 13 21 21 C 1.37595 * 119.87395 * 90.00514 * 8 5 4 22 22 C 1.50707 * 109.47001 * 240.00173 * 2 1 3 23 23 C 1.39860 * 125.89980 * 85.02448 * 22 2 1 24 24 C 1.35323 * 107.92094 * 179.97438 * 23 22 2 25 25 N 1.34940 * 107.74500 * 0.02562 * 24 23 22 26 26 C 1.46498 * 126.03909 * 180.02562 * 25 24 23 27 27 N 1.30845 * 125.89447 * 265.02334 * 22 2 1 28 28 H 1.08999 * 109.47006 * 59.99446 * 1 2 3 29 29 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46580 * 299.99931 * 1 2 3 31 31 H 0.97000 * 120.00288 * 84.99491 * 4 2 1 32 32 H 1.07997 * 119.75243 * 359.97438 * 9 8 5 33 33 H 1.07998 * 119.87683 * 180.25682 * 10 9 8 34 34 H 1.08004 * 120.12567 * 179.75144 * 11 10 9 35 35 H 0.97002 * 119.99559 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.12755 * 359.97050 * 21 8 5 37 37 H 1.07999 * 126.04433 * 0.02562 * 23 22 2 38 38 H 1.08000 * 126.12859 * 179.97438 * 24 23 22 39 39 H 1.09001 * 109.47258 * 269.99935 * 26 25 24 40 40 H 1.09002 * 109.47121 * 29.99658 * 26 25 24 41 41 H 1.09001 * 109.47593 * 150.00002 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4123 0.1771 2.5505 6 8 2.8125 -0.7699 3.5314 7 8 3.2438 1.2442 2.1155 8 6 0.9276 0.9147 3.1474 9 6 0.5560 2.1750 2.7046 10 6 -0.6121 2.7651 3.1614 11 6 -1.4111 2.1087 4.0698 12 6 -1.0410 0.8319 4.5305 13 6 -1.8542 0.1480 5.4633 14 1 -1.8209 -0.9300 5.5206 15 6 -2.7025 0.8678 6.3123 16 7 -2.5073 2.1477 6.5003 17 14 -4.1132 0.0012 7.1773 18 1 -4.1181 -1.4349 6.7996 19 1 -3.9442 0.1263 8.6473 20 1 -5.3993 0.6235 6.7722 21 6 0.1442 0.2403 4.0556 22 6 2.0323 -0.7104 -1.2305 23 6 2.2130 -0.1359 -2.4928 24 6 2.6767 -1.0968 -3.3252 25 7 2.7850 -2.2390 -2.6148 26 6 3.2505 -3.5308 -3.1255 27 7 2.3747 -1.9712 -1.3024 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.1110 -1.6562 1.1948 32 1 1.1794 2.6992 1.9954 33 1 -0.8940 3.7454 2.8066 34 1 -2.3188 2.5720 4.4275 35 1 -3.0950 2.6466 7.0891 36 1 0.4376 -0.7396 4.4022 37 1 2.0178 0.8930 -2.7566 38 1 2.9163 -0.9722 -4.3708 39 1 2.4010 -4.0993 -3.5041 40 1 3.9658 -3.3665 -3.9315 41 1 3.7310 -4.0878 -2.3212 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:04 Heat of formation + Delta-G solvation = -2.028652 kcal Electronic energy + Delta-G solvation = -26327.797270 eV Core-core repulsion = 22528.175343 eV Total energy + Delta-G solvation = -3799.621927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10872 -39.44094 -38.34998 -37.43125 -36.92520 -35.64248 -33.73913 -31.88987 -31.58007 -30.94954 -30.77670 -27.44910 -27.29604 -24.22853 -23.62852 -22.77057 -22.09346 -20.78966 -20.55409 -19.60667 -18.66098 -17.86453 -17.65004 -17.11074 -16.76233 -16.54009 -16.32425 -16.04560 -15.25369 -15.04794 -15.03299 -14.64640 -14.43949 -14.29034 -14.02574 -13.83873 -13.55109 -13.29456 -13.21136 -13.20932 -13.10818 -13.06411 -13.03044 -12.82807 -12.60273 -12.57112 -12.19992 -12.16748 -11.61189 -11.52110 -11.38168 -11.12215 -10.63310 -10.16565 -9.79896 -9.51152 -9.44003 -8.71125 -6.42370 -0.52218 0.43712 0.87951 0.99184 1.38001 1.45488 1.53048 1.68948 1.82170 2.13094 2.19579 2.56919 2.79158 3.41378 3.51517 3.56383 3.89212 4.09542 4.23638 4.28266 4.33140 4.43262 4.47955 4.50544 4.72470 4.75777 4.87224 4.89083 4.92359 4.95044 5.01899 5.09521 5.23099 5.28702 5.36034 5.44217 5.60735 5.66990 5.92639 5.96906 6.02004 6.14697 6.23622 6.55979 6.79076 6.82706 6.88060 8.27309 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.003032 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.648952 B = 9232.498050 C = 9522.281731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.231 3.769 3 H 0.115 0.885 4 N -1.102 6.102 5 S 2.715 3.285 6 O -0.999 6.999 7 O -0.985 6.985 8 C -0.631 4.631 9 C -0.138 4.138 10 C -0.119 4.119 11 C -0.137 4.137 12 C 0.064 3.936 13 C -0.499 4.499 14 H 0.077 0.923 15 C 0.037 3.963 16 N -0.824 5.824 17 Si 0.983 3.017 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.143 4.143 22 C 0.059 3.941 23 C -0.283 4.283 24 C 0.066 3.934 25 N -0.382 5.382 26 C 0.093 3.907 27 N -0.329 5.329 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.424 0.576 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.291 0.709 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.219 0.781 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -5.252 -20.621 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.122 3.878 3 H 0.133 0.867 4 N -0.862 5.862 5 S 2.809 3.191 6 O -0.989 6.989 7 O -0.975 6.975 8 C -0.721 4.721 9 C -0.159 4.159 10 C -0.138 4.138 11 C -0.157 4.157 12 C 0.061 3.939 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.164 4.164 22 C -0.108 4.108 23 C -0.313 4.313 24 C -0.081 4.081 25 N -0.165 5.165 26 C -0.047 4.047 27 N -0.153 5.153 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.260 0.740 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.186 0.814 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.028 -6.054 -19.567 21.351 hybrid contribution -1.379 0.138 0.514 1.478 sum 4.649 -5.916 -19.053 20.485 Atomic orbital electron populations 1.22308 0.93060 1.03038 1.04031 1.19268 0.94576 0.95169 0.78741 0.86740 1.55296 1.83942 1.20172 1.26789 1.00831 0.73775 0.72509 0.71968 1.93496 1.82375 1.63138 1.59934 1.93491 1.65332 1.56635 1.81993 1.30056 1.22125 1.07425 1.12535 1.20463 0.98467 0.93746 1.03239 1.21134 0.95284 0.99622 0.97739 1.21639 1.00163 0.96600 0.97263 1.17997 0.90988 0.93104 0.91818 1.19865 1.20971 0.95120 1.16900 0.90522 1.26734 0.99599 0.95424 0.96096 1.69828 1.34893 1.09920 1.30392 0.85142 0.77192 0.79458 0.77852 1.18318 1.19234 1.18475 1.20772 0.94990 1.00095 1.00519 1.22302 0.99915 0.92200 0.96383 1.21699 1.14719 1.02833 0.92009 1.23205 0.99475 0.85138 1.00254 1.48880 1.50385 1.10807 1.06387 1.22183 1.01372 0.80321 1.00800 1.77155 1.22187 1.16892 0.99026 0.88896 0.92510 0.91672 0.74022 0.84662 0.85240 0.86970 0.89804 0.87756 0.81399 0.76461 0.89637 0.86205 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 9.50 71.98 0.68 -3.70 16 2 C 0.23 6.39 3.39 44.25 0.15 6.54 16 3 H 0.11 2.99 7.50 -2.39 -0.02 2.97 16 4 N -1.10 -35.05 5.45 -172.52 -0.94 -35.99 16 5 S 2.72 105.68 5.72 -56.49 -0.32 105.36 16 6 O -1.00 -44.84 17.27 -128.00 -2.21 -47.05 16 7 O -0.98 -40.22 16.60 -128.00 -2.12 -42.34 16 8 C -0.63 -27.44 5.05 22.22 0.11 -27.32 16 9 C -0.14 -5.66 8.61 22.46 0.19 -5.47 16 10 C -0.12 -5.09 10.02 22.22 0.22 -4.86 16 11 C -0.14 -6.84 8.70 22.73 0.20 -6.64 16 12 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 13 C -0.50 -26.72 9.05 23.46 0.21 -26.51 16 14 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 15 C 0.04 1.82 5.14 85.26 0.44 2.25 16 16 N -0.82 -42.08 10.97 21.83 0.24 -41.84 16 17 Si 0.98 37.72 29.59 68.60 2.03 39.76 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 21 C -0.14 -7.08 9.26 22.73 0.21 -6.87 16 22 C 0.06 1.53 6.19 43.10 0.27 1.80 16 23 C -0.28 -5.57 10.74 21.99 0.24 -5.33 16 24 C 0.07 0.98 11.49 83.54 0.96 1.94 16 25 N -0.38 -7.18 4.01 -369.57 -1.48 -8.66 16 26 C 0.09 0.88 11.47 127.77 1.47 2.35 16 27 N -0.33 -8.86 11.93 -47.38 -0.57 -9.42 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 2.00 6.18 -2.38 -0.01 1.99 16 31 H 0.42 12.89 8.33 -96.74 -0.81 12.08 16 32 H 0.14 4.73 7.59 -2.91 -0.02 4.71 16 33 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.11 5.78 6.18 -2.91 -0.02 5.77 16 35 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 36 H 0.10 5.15 7.60 -2.91 -0.02 5.13 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.39 361.50 0.11 -73.28 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.26 Total: 35.44 kcal Atomic # 6 Polarization: -73.76 SS G_CDS: 5.23 Total: -68.53 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.75 Total: -95.92 kcal Atomic # 8 Polarization: -85.06 SS G_CDS: -4.33 Total: -89.40 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 16 Polarization: 105.68 SS G_CDS: -0.32 Total: 105.36 kcal Total: -73.39 0.11 -73.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.251 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds