Wall clock time and date at job start Tue Mar 31 2020 19:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 N 1.46500 * 109.46814 * 240.00461 * 2 1 3 5 5 S 1.65602 * 120.00420 * 95.00118 * 4 2 1 6 6 O 1.42101 * 106.40362 * 178.53741 * 5 4 2 7 7 O 1.42099 * 106.39590 * 311.45682 * 5 4 2 8 8 C 1.76201 * 107.21909 * 64.99381 * 5 4 2 9 9 C 1.38654 * 119.87801 * 269.73422 * 8 5 4 10 10 C 1.38617 * 120.50260 * 179.72458 * 9 8 5 11 11 C 1.37634 * 120.24189 * 0.54383 * 10 9 8 12 12 C 1.40696 * 119.75185 * 359.73319 * 11 10 9 13 13 C 1.41392 * 120.24575 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99954 * 204.36929 * 13 12 11 15 15 C 1.39942 * 120.00221 * 24.36969 * 13 12 11 16 16 N 1.30827 * 120.00174 * 17.87675 * 15 13 12 17 17 Si 1.86800 * 120.00034 * 197.88296 * 15 13 12 18 18 H 1.48504 * 109.47366 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47488 * 119.99605 * 17 15 13 20 20 H 1.48507 * 109.47158 * 239.99971 * 17 15 13 21 21 C 1.37596 * 119.87395 * 89.99940 * 8 5 4 22 22 C 1.50698 * 109.47251 * 120.00079 * 2 1 3 23 23 C 1.39872 * 125.89925 * 274.99982 * 22 2 1 24 24 C 1.35314 * 107.91864 * 180.02562 * 23 22 2 25 25 N 1.34954 * 107.74916 * 359.97438 * 24 23 22 26 26 C 1.46490 * 126.03768 * 180.02562 * 25 24 23 27 27 N 1.30837 * 125.89537 * 94.69577 * 22 2 1 28 28 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47778 * 59.99856 * 1 2 3 30 30 H 1.09002 * 109.47055 * 299.99966 * 1 2 3 31 31 H 0.97005 * 119.99668 * 274.99546 * 4 2 1 32 32 H 1.08004 * 119.74719 * 359.97438 * 9 8 5 33 33 H 1.07993 * 119.87613 * 180.25122 * 10 9 8 34 34 H 1.08004 * 120.12438 * 179.75348 * 11 10 9 35 35 H 0.97003 * 119.99917 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.12844 * 359.97438 * 21 8 5 37 37 H 1.07999 * 126.03600 * 359.97438 * 23 22 2 38 38 H 1.08002 * 126.12465 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47460 * 90.00110 * 26 25 24 40 40 H 1.09008 * 109.47227 * 210.00101 * 26 25 24 41 41 H 1.09005 * 109.47845 * 329.99912 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 16 2.4121 0.1773 -2.5506 6 8 2.8775 -0.7634 -3.5086 7 8 1.3245 1.0593 -2.7921 8 6 3.7926 1.1911 -2.1372 9 6 3.5869 2.4674 -1.6359 10 6 4.6634 3.2738 -1.3011 11 6 5.9507 2.8186 -1.4740 12 6 6.1717 1.5275 -1.9874 13 6 7.4898 1.0491 -2.1688 14 1 7.6875 0.2723 -2.8927 15 6 8.5382 1.5820 -1.4104 16 7 8.2800 2.2480 -0.3144 17 14 10.3064 1.3426 -1.9631 18 1 10.3291 0.5594 -3.2246 19 1 10.9375 2.6674 -2.1911 20 1 11.0586 0.6102 -0.9127 21 6 5.0710 0.7154 -2.3184 22 6 2.0323 -0.7104 1.2304 23 6 2.2126 -0.1360 2.4929 24 6 2.6765 -1.0969 3.3251 25 7 2.7854 -2.2390 2.6145 26 6 3.2502 -3.5309 3.1254 27 7 2.3698 -1.9724 1.3035 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 2.1109 -1.6561 -1.1950 32 1 2.5800 2.8344 -1.5014 33 1 4.4914 4.2647 -0.9076 34 1 6.7882 3.4501 -1.2163 35 1 9.0067 2.6178 0.2111 36 1 5.2291 -0.2776 -2.7127 37 1 2.0170 0.8929 2.7567 38 1 2.9167 -0.9721 4.3707 39 1 2.4004 -4.0994 3.5030 40 1 3.7315 -4.0878 2.3213 41 1 3.9649 -3.3669 3.9320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591331086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:07 Heat of formation + Delta-G solvation = 20.203237 kcal Electronic energy + Delta-G solvation = -26660.930850 eV Core-core repulsion = 22862.272970 eV Total energy + Delta-G solvation = -3798.657879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15414 -37.61092 -36.76658 -36.15669 -35.23151 -33.82468 -32.81460 -30.05503 -29.99941 -29.76119 -29.66419 -26.61906 -25.46998 -23.18961 -21.86380 -21.18394 -20.96846 -19.70091 -18.98949 -17.90836 -17.30885 -16.68254 -15.90066 -15.84350 -15.46979 -15.15112 -14.74082 -14.49203 -14.04826 -13.71355 -13.50475 -13.44463 -13.30786 -13.08330 -12.65587 -12.55233 -12.54443 -12.11073 -11.88166 -11.55294 -11.50244 -11.47891 -11.36100 -11.33957 -11.02193 -10.94783 -10.86579 -10.61767 -10.57866 -9.80844 -9.67107 -9.33764 -9.29306 -9.08034 -8.51244 -8.00078 -7.67280 -6.91081 -4.50943 1.09304 1.91917 2.23528 2.49956 2.65004 2.83011 3.00687 3.05419 3.08116 3.62026 3.84242 4.27378 4.39560 4.50916 4.73787 4.86646 5.00593 5.02725 5.17029 5.27434 5.37472 5.43089 5.57138 5.60938 5.79130 5.89030 5.97514 6.07974 6.20149 6.30437 6.34813 6.65515 6.69247 6.79241 6.88873 7.01768 7.05518 7.24385 7.32149 7.42109 7.75571 7.77839 7.84093 7.97502 8.43262 8.69397 8.74816 10.04409 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.004468 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.317150 B = 6265.050163 C = 7819.544590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.106 0.894 4 N -1.112 6.112 5 S 2.688 3.312 6 O -0.972 6.972 7 O -0.973 6.973 8 C -0.632 4.632 9 C -0.151 4.151 10 C -0.120 4.120 11 C -0.119 4.119 12 C 0.092 3.908 13 C -0.460 4.460 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.795 5.795 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.120 4.120 22 C 0.077 3.923 23 C -0.260 4.260 24 C 0.053 3.947 25 N -0.378 5.378 26 C 0.103 3.897 27 N -0.285 5.285 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.282 0.718 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 -5.411 9.856 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.129 3.871 3 H 0.124 0.876 4 N -0.869 5.869 5 S 2.784 3.216 6 O -0.963 6.963 7 O -0.963 6.963 8 C -0.723 4.723 9 C -0.172 4.172 10 C -0.139 4.139 11 C -0.139 4.139 12 C 0.088 3.912 13 C -0.489 4.489 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.420 5.420 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.142 4.142 22 C -0.092 4.092 23 C -0.290 4.290 24 C -0.093 4.093 25 N -0.161 5.161 26 C -0.038 4.038 27 N -0.108 5.108 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.168 0.832 38 H 0.190 0.810 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.097 -6.437 8.680 14.126 hybrid contribution 1.628 0.528 1.095 2.032 sum -7.469 -5.908 9.775 13.648 Atomic orbital electron populations 1.22297 0.93677 1.02928 1.03465 1.19036 0.94042 0.94867 0.79166 0.87588 1.55608 1.82267 1.19648 1.29376 1.01705 0.74312 0.73306 0.72278 1.93536 1.82392 1.62563 1.57802 1.93512 1.52855 1.66241 1.83658 1.29754 1.14243 1.09794 1.18555 1.20094 0.97864 0.93711 1.05513 1.20797 0.93511 0.98299 1.01296 1.21621 0.95517 0.95767 1.00962 1.17683 0.92570 0.90981 0.89954 1.19651 0.91245 1.19002 1.19049 0.89929 1.25924 1.01974 0.93071 0.93287 1.69798 1.35069 1.26967 1.10155 0.86226 0.81117 0.79185 0.80066 1.18198 1.19566 1.19930 1.20776 0.90761 0.98771 1.03879 1.22310 0.99142 0.91870 0.95847 1.21339 1.13742 1.01206 0.92707 1.22483 1.01549 0.86475 0.98778 1.48454 1.51188 1.09125 1.07287 1.21820 0.99996 0.81778 1.00241 1.77193 1.20453 1.16513 0.96603 0.92081 0.90152 0.91237 0.74653 0.87466 0.88372 0.85799 0.90716 0.87152 0.83228 0.80984 0.91020 0.89250 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.50 37.16 0.35 -1.68 16 2 C 0.24 3.54 3.25 -69.09 -0.22 3.31 16 3 H 0.11 1.58 7.24 -51.93 -0.38 1.20 16 4 N -1.11 -18.16 5.45 -5.88 -0.03 -18.20 16 5 S 2.69 52.32 5.65 -107.50 -0.61 51.71 16 6 O -0.97 -21.33 17.27 -57.17 -0.99 -22.32 16 7 O -0.97 -19.61 16.52 -57.17 -0.94 -20.56 16 8 C -0.63 -14.09 5.81 -39.66 -0.23 -14.32 16 9 C -0.15 -3.26 8.92 -39.29 -0.35 -3.61 16 10 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 11 C -0.12 -2.98 8.70 -38.87 -0.34 -3.32 16 12 C 0.09 2.41 5.58 -106.83 -0.60 1.81 16 13 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 14 H 0.08 2.10 7.91 -52.48 -0.42 1.68 16 15 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 16 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 17 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.12 -2.99 9.26 -38.87 -0.36 -3.35 16 22 C 0.08 1.15 6.19 -82.41 -0.51 0.64 16 23 C -0.26 -3.41 10.74 -40.01 -0.43 -3.84 16 24 C 0.05 0.60 11.49 -17.22 -0.20 0.40 16 25 N -0.38 -4.76 4.01 -68.16 -0.27 -5.03 16 26 C 0.10 0.83 11.47 59.84 0.69 1.51 16 27 N -0.29 -4.42 11.93 33.67 0.40 -4.02 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.42 6.46 8.33 -34.47 -0.29 6.17 16 32 H 0.11 2.04 7.59 -52.48 -0.40 1.64 16 33 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.12 3.16 6.15 -52.48 -0.32 2.83 16 35 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 36 H 0.11 2.66 7.60 -52.48 -0.40 2.27 16 37 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.22 363.47 -9.53 -42.74 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.11 Total: 12.29 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: -3.03 Total: -36.14 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.70 Total: -46.46 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.93 Total: -42.88 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.61 Total: 51.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.22 -9.53 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.947 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds