Wall clock time and date at job start Tue Mar 31 2020 19:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 N 1.46500 * 109.46814 * 240.00461 * 2 1 3 5 5 S 1.65602 * 120.00420 * 95.00118 * 4 2 1 6 6 O 1.42101 * 106.40362 * 178.53741 * 5 4 2 7 7 O 1.42099 * 106.39590 * 311.45682 * 5 4 2 8 8 C 1.76201 * 107.21909 * 64.99381 * 5 4 2 9 9 C 1.38654 * 119.87801 * 269.73422 * 8 5 4 10 10 C 1.38617 * 120.50260 * 179.72458 * 9 8 5 11 11 C 1.37634 * 120.24189 * 0.54383 * 10 9 8 12 12 C 1.40696 * 119.75185 * 359.73319 * 11 10 9 13 13 C 1.41392 * 120.24575 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99954 * 204.36929 * 13 12 11 15 15 C 1.39942 * 120.00221 * 24.36969 * 13 12 11 16 16 N 1.30827 * 120.00174 * 17.87675 * 15 13 12 17 17 Si 1.86800 * 120.00034 * 197.88296 * 15 13 12 18 18 H 1.48504 * 109.47366 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47488 * 119.99605 * 17 15 13 20 20 H 1.48507 * 109.47158 * 239.99971 * 17 15 13 21 21 C 1.37596 * 119.87395 * 89.99940 * 8 5 4 22 22 C 1.50698 * 109.47251 * 120.00079 * 2 1 3 23 23 C 1.39872 * 125.89925 * 274.99982 * 22 2 1 24 24 C 1.35314 * 107.91864 * 180.02562 * 23 22 2 25 25 N 1.34954 * 107.74916 * 359.97438 * 24 23 22 26 26 C 1.46490 * 126.03768 * 180.02562 * 25 24 23 27 27 N 1.30837 * 125.89537 * 94.69577 * 22 2 1 28 28 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47778 * 59.99856 * 1 2 3 30 30 H 1.09002 * 109.47055 * 299.99966 * 1 2 3 31 31 H 0.97005 * 119.99668 * 274.99546 * 4 2 1 32 32 H 1.08004 * 119.74719 * 359.97438 * 9 8 5 33 33 H 1.07993 * 119.87613 * 180.25122 * 10 9 8 34 34 H 1.08004 * 120.12438 * 179.75348 * 11 10 9 35 35 H 0.97003 * 119.99917 * 180.02562 * 16 15 13 36 36 H 1.08005 * 120.12844 * 359.97438 * 21 8 5 37 37 H 1.07999 * 126.03600 * 359.97438 * 23 22 2 38 38 H 1.08002 * 126.12465 * 179.97438 * 24 23 22 39 39 H 1.08999 * 109.47460 * 90.00110 * 26 25 24 40 40 H 1.09008 * 109.47227 * 210.00101 * 26 25 24 41 41 H 1.09005 * 109.47845 * 329.99912 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 16 2.4121 0.1773 -2.5506 6 8 2.8775 -0.7634 -3.5086 7 8 1.3245 1.0593 -2.7921 8 6 3.7926 1.1911 -2.1372 9 6 3.5869 2.4674 -1.6359 10 6 4.6634 3.2738 -1.3011 11 6 5.9507 2.8186 -1.4740 12 6 6.1717 1.5275 -1.9874 13 6 7.4898 1.0491 -2.1688 14 1 7.6875 0.2723 -2.8927 15 6 8.5382 1.5820 -1.4104 16 7 8.2800 2.2480 -0.3144 17 14 10.3064 1.3426 -1.9631 18 1 10.3291 0.5594 -3.2246 19 1 10.9375 2.6674 -2.1911 20 1 11.0586 0.6102 -0.9127 21 6 5.0710 0.7154 -2.3184 22 6 2.0323 -0.7104 1.2304 23 6 2.2126 -0.1360 2.4929 24 6 2.6765 -1.0969 3.3251 25 7 2.7854 -2.2390 2.6145 26 6 3.2502 -3.5309 3.1254 27 7 2.3698 -1.9724 1.3035 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 2.1109 -1.6561 -1.1950 32 1 2.5800 2.8344 -1.5014 33 1 4.4914 4.2647 -0.9076 34 1 6.7882 3.4501 -1.2163 35 1 9.0067 2.6178 0.2111 36 1 5.2291 -0.2776 -2.7127 37 1 2.0170 0.8929 2.7567 38 1 2.9167 -0.9721 4.3707 39 1 2.4004 -4.0994 3.5030 40 1 3.7315 -4.0878 2.3213 41 1 3.9649 -3.3669 3.9320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591331086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:07 Heat of formation + Delta-G solvation = -2.658514 kcal Electronic energy + Delta-G solvation = -26661.922210 eV Core-core repulsion = 22862.272970 eV Total energy + Delta-G solvation = -3799.649239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10523 -39.44870 -38.34337 -37.41764 -36.90028 -35.67643 -33.74413 -31.91704 -31.58774 -30.96069 -30.79988 -27.44271 -27.35823 -24.23869 -23.66628 -22.80890 -22.11282 -20.79019 -20.56838 -19.58784 -18.65040 -17.86393 -17.73272 -17.12030 -16.82913 -16.53952 -16.33562 -16.03049 -15.25193 -15.09546 -15.02714 -14.66039 -14.46398 -14.30615 -14.04703 -13.70462 -13.65292 -13.32582 -13.28636 -13.17165 -13.11600 -13.05946 -13.03825 -12.81139 -12.66161 -12.56515 -12.23782 -12.15320 -11.64186 -11.55666 -11.38257 -11.15534 -10.64674 -10.16685 -9.84199 -9.55705 -9.44366 -8.74371 -6.46077 -0.50259 0.40802 0.84221 0.98748 1.35337 1.43013 1.50400 1.68410 1.80816 2.13820 2.16624 2.54470 2.77071 3.44934 3.47614 3.54806 3.86191 4.06928 4.21495 4.28259 4.31474 4.41889 4.45953 4.46311 4.69632 4.74095 4.84296 4.88220 4.90596 4.92631 5.02277 5.06542 5.19428 5.28440 5.33632 5.41231 5.56856 5.67281 5.88772 5.93356 6.00985 6.11354 6.21665 6.52181 6.78246 6.78690 6.84554 8.23878 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.004468 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.317150 B = 6265.050163 C = 7819.544590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.230 3.770 3 H 0.104 0.896 4 N -1.102 6.102 5 S 2.718 3.282 6 O -0.999 6.999 7 O -0.974 6.974 8 C -0.638 4.638 9 C -0.145 4.145 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.063 3.937 13 C -0.501 4.501 14 H 0.074 0.926 15 C 0.039 3.961 16 N -0.821 5.821 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.148 4.148 22 C 0.058 3.942 23 C -0.285 4.285 24 C 0.062 3.938 25 N -0.383 5.383 26 C 0.094 3.906 27 N -0.325 5.325 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.424 0.576 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.292 0.708 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.215 0.785 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -5.127 11.718 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.121 3.879 3 H 0.122 0.878 4 N -0.862 5.862 5 S 2.811 3.189 6 O -0.989 6.989 7 O -0.964 6.964 8 C -0.727 4.727 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.159 4.159 12 C 0.060 3.940 13 C -0.530 4.530 14 H 0.092 0.908 15 C -0.176 4.176 16 N -0.446 5.446 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.184 1.184 20 H -0.188 1.188 21 C -0.169 4.169 22 C -0.109 4.109 23 C -0.314 4.314 24 C -0.085 4.085 25 N -0.165 5.165 26 C -0.046 4.046 27 N -0.149 5.149 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.183 0.817 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.625 -6.141 10.549 15.545 hybrid contribution 1.661 0.399 0.631 1.821 sum -7.964 -5.742 11.180 14.879 Atomic orbital electron populations 1.22259 0.91730 1.03401 1.04345 1.19298 0.95593 0.94544 0.78469 0.87772 1.55350 1.81726 1.19689 1.29387 1.00865 0.73210 0.72595 0.72235 1.93495 1.82741 1.63114 1.59561 1.93503 1.52163 1.66641 1.84044 1.30221 1.14494 1.10793 1.17221 1.20538 0.99209 0.93097 1.03701 1.21170 0.92596 0.99796 1.00311 1.21643 0.96540 0.95484 1.02198 1.18028 0.93270 0.91929 0.90806 1.19856 0.92468 1.20344 1.20348 0.90800 1.26709 1.05752 0.92344 0.92822 1.69817 1.36804 1.27258 1.10736 0.85165 0.75680 0.79493 0.79453 1.18590 1.18369 1.18791 1.20805 0.91797 0.98707 1.05608 1.22407 0.99844 0.92172 0.96489 1.21682 1.14858 1.02540 0.92358 1.23160 0.99560 0.85470 1.00277 1.48843 1.50418 1.10745 1.06536 1.22165 1.01444 0.80367 1.00659 1.77097 1.21945 1.17045 0.98815 0.91841 0.90645 0.88883 0.74056 0.84297 0.85057 0.86806 0.89709 0.88029 0.81733 0.76861 0.89009 0.90107 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.50 71.98 0.68 -2.96 16 2 C 0.23 6.58 3.25 44.24 0.14 6.73 16 3 H 0.10 2.97 7.24 -2.39 -0.02 2.95 16 4 N -1.10 -35.71 5.45 -172.53 -0.94 -36.65 16 5 S 2.72 105.24 5.65 -56.49 -0.32 104.92 16 6 O -1.00 -44.44 17.27 -128.00 -2.21 -46.65 16 7 O -0.97 -37.95 16.52 -128.00 -2.11 -40.06 16 8 C -0.64 -28.63 5.81 22.22 0.13 -28.50 16 9 C -0.14 -6.10 8.92 22.46 0.20 -5.90 16 10 C -0.12 -5.27 10.02 22.22 0.22 -5.05 16 11 C -0.14 -7.11 8.70 22.73 0.20 -6.91 16 12 C 0.06 3.44 5.58 -21.29 -0.12 3.32 16 13 C -0.50 -27.36 9.05 23.46 0.21 -27.14 16 14 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 15 C 0.04 1.95 5.14 85.26 0.44 2.39 16 16 N -0.82 -41.49 10.95 21.83 0.24 -41.25 16 17 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 21 C -0.15 -7.62 9.26 22.73 0.21 -7.41 16 22 C 0.06 1.70 6.19 43.10 0.27 1.96 16 23 C -0.28 -6.99 10.74 21.99 0.24 -6.75 16 24 C 0.06 1.25 11.49 83.54 0.96 2.21 16 25 N -0.38 -9.01 4.01 -369.57 -1.48 -10.49 16 26 C 0.09 1.31 11.47 127.77 1.47 2.78 16 27 N -0.33 -9.92 11.93 -47.38 -0.57 -10.49 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.81 7.64 -2.39 -0.02 1.80 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.42 13.17 8.33 -96.74 -0.81 12.36 16 32 H 0.14 4.92 7.59 -2.91 -0.02 4.90 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 34 H 0.11 5.96 6.15 -2.91 -0.02 5.94 16 35 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 36 H 0.10 5.22 7.60 -2.91 -0.02 5.20 16 37 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -73.32 363.47 0.14 -73.18 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.26 Total: 38.92 kcal Atomic # 6 Polarization: -76.49 SS G_CDS: 5.25 Total: -71.24 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -2.75 Total: -98.87 kcal Atomic # 8 Polarization: -82.39 SS G_CDS: -4.32 Total: -86.71 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: 105.24 SS G_CDS: -0.32 Total: 104.92 kcal Total: -73.32 0.14 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591331086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds