Wall clock time and date at job start Tue Mar 31 2020 19:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47044 * 2 1 4 4 C 1.50696 * 109.47099 * 119.99616 * 2 1 3 5 5 N 1.30930 * 126.40646 * 254.71120 * 4 2 1 6 6 C 1.35393 * 105.58358 * 179.91888 * 5 4 2 7 7 C 1.47724 * 126.45562 * 180.11006 * 6 5 4 8 8 C 1.34857 * 125.27668 * 180.26399 * 7 6 5 9 9 C 1.37815 * 114.72517 * 179.97438 * 8 7 6 10 10 C 1.33719 * 115.07134 * 359.97438 * 9 8 7 11 11 S 1.75863 * 109.74527 * 359.73629 * 10 9 8 12 12 N 1.31048 * 107.09334 * 0.34971 * 6 5 4 13 13 O 1.21286 * 110.04638 * 359.78244 * 12 6 5 14 14 N 1.46901 * 109.47253 * 240.00084 * 2 1 3 15 15 C 1.48530 * 111.00084 * 59.15014 * 14 2 1 16 16 C 1.54943 * 103.22419 * 159.72426 * 15 14 2 17 17 C 1.54601 * 102.92043 * 322.58527 * 16 15 14 18 18 O 1.42897 * 110.30504 * 140.87862 * 17 16 15 19 19 C 1.50703 * 110.30624 * 263.04378 * 17 16 15 20 20 H 1.07998 * 120.00192 * 115.71772 * 19 17 16 21 21 C 1.37883 * 119.99809 * 295.71613 * 19 17 16 22 22 N 1.31506 * 120.00079 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99462 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47186 * 90.00384 * 23 21 19 25 25 H 1.48504 * 109.46616 * 210.00026 * 23 21 19 26 26 H 1.48493 * 109.47343 * 329.99409 * 23 21 19 27 27 C 1.47905 * 110.99925 * 176.54779 * 14 2 1 28 28 H 1.08995 * 109.46929 * 174.20469 * 1 2 3 29 29 H 1.08997 * 109.47049 * 294.20832 * 1 2 3 30 30 H 1.09005 * 109.47127 * 54.20569 * 1 2 3 31 31 H 1.08006 * 122.63271 * 359.97438 * 8 7 6 32 32 H 1.08005 * 122.46166 * 180.02562 * 9 8 7 33 33 H 1.08006 * 125.12220 * 180.02562 * 10 9 8 34 34 H 1.09000 * 110.66452 * 41.29019 * 15 14 2 35 35 H 1.08995 * 110.80940 * 278.22427 * 15 14 2 36 36 H 1.09000 * 110.72168 * 204.23122 * 16 15 14 37 37 H 1.08997 * 110.72639 * 80.94206 * 16 15 14 38 38 H 0.96695 * 114.00690 * 64.28695 * 18 17 16 39 39 H 0.97007 * 120.00166 * 179.97438 * 22 21 19 40 40 H 1.09008 * 109.91717 * 94.80167 * 27 14 2 41 41 H 1.08994 * 109.91952 * 333.50742 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.5533 -0.1500 2.2929 6 6 2.8538 -1.1696 3.1315 7 6 3.4638 -1.0530 4.4719 8 6 3.7580 -2.0868 5.2863 9 6 4.3243 -1.7288 6.4907 10 6 4.4959 -0.4146 6.6677 11 16 3.9276 0.4553 5.2489 12 7 2.5063 -2.2797 2.5281 13 8 2.0347 -2.0308 1.4388 14 7 2.0197 -0.6925 -1.1994 15 6 1.5267 -0.0309 -2.4346 16 6 2.5176 -0.5225 -3.5196 17 6 3.8680 -0.5502 -2.7673 18 8 4.6302 -1.6938 -3.1587 19 6 4.6431 0.7137 -3.0373 20 1 4.8579 1.3983 -2.2301 21 6 5.0781 0.9960 -4.3149 22 7 4.8163 0.1627 -5.2979 23 14 6.0395 2.5624 -4.6493 24 1 7.4910 2.2979 -4.4807 25 1 5.7773 3.0170 -6.0385 26 1 5.6144 3.6175 -3.6948 27 6 3.4958 -0.6406 -1.2759 28 1 -0.3633 -1.0224 -0.1038 29 1 -0.3633 0.4214 0.9373 30 1 -0.3634 0.6011 -0.8336 31 1 3.5649 -3.1145 5.0159 32 1 4.6092 -2.4564 7.2363 33 1 4.9237 0.0433 7.5474 34 1 1.5725 1.0535 -2.3346 35 1 0.5114 -0.3521 -2.6670 36 1 2.5551 0.1783 -4.3536 37 1 2.2478 -1.5205 -3.8647 38 1 4.8934 -1.6916 -4.0891 39 1 5.1220 0.3615 -6.1968 40 1 3.9222 -1.5446 -0.8409 41 1 3.8644 0.2384 -0.7472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:48 Heat of formation + Delta-G solvation = 65.810600 kcal Electronic energy + Delta-G solvation = -26500.113049 eV Core-core repulsion = 22703.432853 eV Total energy + Delta-G solvation = -3796.680196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.42632 -38.82774 -38.11472 -35.96775 -35.43193 -33.12726 -32.16164 -31.21619 -29.51726 -28.62193 -27.61990 -25.32646 -24.62165 -24.46965 -23.29413 -21.72005 -20.32337 -19.54274 -19.04091 -18.26433 -17.92759 -17.11034 -16.60296 -15.93001 -15.82511 -15.28740 -15.00686 -14.29663 -14.10032 -13.87617 -13.58039 -13.21591 -12.97747 -12.83563 -12.67367 -12.60789 -12.26518 -12.23265 -11.78340 -11.76246 -11.48398 -11.33812 -11.14732 -11.12404 -11.10356 -10.91035 -10.65093 -10.53434 -10.45870 -10.17424 -10.07496 -9.23989 -8.77515 -8.74403 -8.64956 -8.19278 -8.00260 -6.26996 -4.37016 0.30269 1.22181 1.31381 1.71364 2.11325 2.77882 2.88861 3.18649 3.26264 3.28937 3.34399 3.97641 4.24387 4.44914 4.74238 4.80282 4.97927 5.03437 5.16419 5.24179 5.29294 5.46039 5.56300 5.69612 5.72690 5.80040 5.87193 5.88068 5.94767 6.02522 6.10100 6.11114 6.14377 6.30433 6.59708 6.83615 6.96893 7.24495 7.29163 7.39241 7.49876 7.74582 8.12101 8.18879 8.66171 9.32646 9.53161 10.78828 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.003085 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.522460 B = 9075.186353 C = 9946.975585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.160 3.840 3 H 0.091 0.909 4 C 0.219 3.781 5 N -0.482 5.482 6 C 0.230 3.770 7 C -0.123 4.123 8 C -0.096 4.096 9 C -0.138 4.138 10 C -0.215 4.215 11 S 0.185 5.815 12 N -0.372 5.372 13 O 0.104 5.896 14 N -0.510 5.510 15 C 0.043 3.957 16 C -0.128 4.128 17 C 0.250 3.750 18 O -0.589 6.589 19 C -0.537 4.537 20 H 0.059 0.941 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.047 3.953 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.383 0.617 39 H 0.269 0.731 40 H 0.068 0.932 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 0.080 17.251 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.049 3.951 3 H 0.108 0.892 4 C -0.002 4.002 5 N -0.215 5.215 6 C -0.041 4.041 7 C -0.242 4.242 8 C -0.131 4.131 9 C -0.168 4.168 10 C -0.352 4.352 11 S 0.450 5.550 12 N -0.078 5.078 13 O 0.042 5.958 14 N -0.236 5.236 15 C -0.083 4.083 16 C -0.166 4.166 17 C 0.209 3.791 18 O -0.399 6.399 19 C -0.576 4.576 20 H 0.077 0.923 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.080 4.080 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.235 0.765 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.639 0.456 17.915 19.111 hybrid contribution 1.059 0.368 -0.555 1.251 sum -5.580 0.825 17.361 18.254 Atomic orbital electron populations 1.21891 0.91399 1.04057 1.02861 1.20399 0.96500 0.94533 0.83705 0.89183 1.28618 0.93859 0.80915 0.96814 1.72048 1.17588 1.29771 1.02121 1.22646 1.01256 0.84663 0.95524 1.21290 1.10235 0.98478 0.94226 1.20355 0.99522 0.99934 0.93291 1.20019 1.02835 0.95871 0.98096 1.26043 1.08105 0.97883 1.03162 1.84497 1.56938 1.06032 1.07529 1.75019 1.15498 1.22536 0.94731 1.85343 1.57393 1.26798 1.26230 1.64958 1.09268 1.49197 1.00214 1.23186 0.99091 0.96651 0.89417 1.23049 0.95673 1.00385 0.97526 1.19287 0.87906 0.84758 0.87106 1.86111 1.74927 1.45235 1.33582 1.21749 1.35686 1.05725 0.94393 0.92259 1.24998 0.95178 0.97095 0.95863 1.69614 1.45950 1.36721 1.01081 0.86482 0.80405 0.82953 0.77545 1.20416 1.20980 1.19808 1.22907 0.85262 1.00198 0.99615 0.90643 0.91797 0.90211 0.83501 0.83591 0.81201 0.93463 0.90940 0.89685 0.92878 0.76527 0.92132 0.91318 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.86 37.16 0.33 -1.34 16 2 C 0.16 2.43 2.31 -68.87 -0.16 2.28 16 3 H 0.09 1.38 7.98 -51.93 -0.41 0.96 16 4 C 0.22 3.63 6.51 -12.98 -0.08 3.54 16 5 N -0.48 -8.19 11.58 -9.88 -0.11 -8.31 16 6 C 0.23 3.81 8.02 -156.04 -1.25 2.56 16 7 C -0.12 -1.72 6.44 -36.91 -0.24 -1.95 16 8 C -0.10 -1.13 10.05 -40.94 -0.41 -1.54 16 9 C -0.14 -1.26 10.16 -41.32 -0.42 -1.68 16 10 C -0.21 -1.86 11.23 29.15 0.33 -1.53 16 11 S 0.19 2.10 23.32 -107.50 -2.51 -0.40 16 12 N -0.37 -6.43 12.16 30.99 0.38 -6.05 16 13 O 0.10 1.82 11.29 18.00 0.20 2.02 16 14 N -0.51 -9.25 5.10 -223.89 -1.14 -10.39 16 15 C 0.04 0.77 5.40 -1.90 -0.01 0.76 16 16 C -0.13 -2.80 5.90 -24.86 -0.15 -2.95 16 17 C 0.25 6.10 0.99 -90.41 -0.09 6.01 16 18 O -0.59 -15.55 12.93 -35.23 -0.46 -16.00 16 19 C -0.54 -14.05 8.22 -34.44 -0.28 -14.33 16 20 H 0.06 1.56 7.34 -52.49 -0.39 1.18 16 21 C 0.07 1.83 5.01 -17.82 -0.09 1.74 16 22 N -0.89 -23.19 10.41 55.43 0.58 -22.61 16 23 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.05 1.04 5.43 -2.76 -0.01 1.02 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.82 7.23 -51.93 -0.38 0.45 16 31 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.05 0.82 8.01 -51.93 -0.42 0.40 16 35 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 36 H 0.08 2.02 6.77 -51.93 -0.35 1.66 16 37 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.38 10.18 7.05 45.56 0.32 10.50 16 39 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.07 1.59 7.96 -51.92 -0.41 1.18 16 41 H 0.05 1.04 6.92 -51.93 -0.36 0.68 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -28.71 356.10 -9.72 -38.43 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.47 Total: 10.16 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.54 Total: -7.43 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.30 Total: -47.36 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.25 Total: -13.98 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.51 Total: -0.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.71 -9.72 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.240 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds