Wall clock time and date at job start Tue Mar 31 2020 19:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50690 * 109.46993 * 120.00315 * 2 1 3 5 5 N 1.30931 * 126.40160 * 254.99467 * 4 2 1 6 6 C 1.35394 * 105.57794 * 179.97438 * 5 4 2 7 7 C 1.47733 * 126.45040 * 179.97438 * 6 5 4 8 8 C 1.34858 * 125.27449 * 179.97438 * 7 6 5 9 9 C 1.37820 * 114.72242 * 180.02562 * 8 7 6 10 10 C 1.33711 * 115.07372 * 0.02562 * 9 8 7 11 11 S 1.75863 * 109.75007 * 359.97438 * 10 9 8 12 12 N 1.31040 * 107.10184 * 0.23409 * 6 5 4 13 13 O 1.21289 * 110.04126 * 359.59774 * 12 6 5 14 14 N 1.46899 * 109.46894 * 240.00306 * 2 1 3 15 15 C 1.47898 * 111.00138 * 309.87479 * 14 2 1 16 16 C 1.53996 * 107.05706 * 214.16077 * 15 14 2 17 17 C 1.54602 * 105.13929 * 1.21863 * 16 15 14 18 18 O 1.42900 * 110.72694 * 263.42430 * 17 16 15 19 19 C 1.50706 * 110.72026 * 140.31830 * 17 16 15 20 20 H 1.07994 * 119.99781 * 241.45549 * 19 17 16 21 21 C 1.37877 * 119.99753 * 61.45675 * 19 17 16 22 22 N 1.31517 * 120.00231 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99578 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47296 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46910 * 120.00370 * 23 21 19 26 26 H 1.48494 * 109.46807 * 239.99860 * 23 21 19 27 27 C 1.48540 * 110.99707 * 192.47514 * 14 2 1 28 28 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46971 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.46746 * 59.99648 * 1 2 3 31 31 H 1.08002 * 122.63541 * 359.97438 * 8 7 6 32 32 H 1.08008 * 122.46100 * 180.02562 * 9 8 7 33 33 H 1.08002 * 125.12441 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.91600 * 333.50671 * 15 14 2 35 35 H 1.08991 * 109.91905 * 94.80163 * 15 14 2 36 36 H 1.08997 * 110.31224 * 120.14269 * 16 15 14 37 37 H 1.08999 * 110.30637 * 242.30950 * 16 15 14 38 38 H 0.96706 * 113.99891 * 298.55346 * 18 17 16 39 39 H 0.97003 * 119.99806 * 180.02562 * 22 21 19 40 40 H 1.09000 * 110.66505 * 278.15598 * 27 14 2 41 41 H 1.08993 * 110.66622 * 41.28640 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.5485 -0.1498 2.2950 6 6 2.8523 -1.1697 3.1320 7 6 3.4618 -1.0532 4.4727 8 6 3.7543 -2.0870 5.2878 9 6 4.3193 -1.7289 6.4927 10 6 4.4906 -0.4147 6.6700 11 16 3.9174 0.4557 5.2535 12 7 2.5092 -2.2802 2.5267 13 8 2.0337 -2.0309 1.4391 14 7 2.0197 -0.6924 -1.1995 15 6 1.3617 -2.0075 -1.3580 16 6 2.4019 -2.9617 -1.9737 17 6 3.6877 -2.1161 -2.1218 18 8 3.7986 -1.5920 -3.4465 19 6 4.9054 -2.9311 -1.7691 20 1 5.5355 -2.6314 -0.9448 21 6 5.2148 -4.0592 -2.4988 22 7 4.4472 -4.4245 -3.5023 23 14 6.7246 -5.0690 -2.0620 24 1 7.4153 -4.4504 -0.9022 25 1 6.3111 -6.4518 -1.7127 26 1 7.6477 -5.1072 -3.2245 27 6 3.4737 -0.9771 -1.0935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5601 -3.1145 5.0178 32 1 4.6029 -2.4565 7.2390 33 1 4.9175 0.0431 7.5501 34 1 1.0433 -2.3830 -0.3855 35 1 0.5030 -1.9153 -2.0228 36 1 2.5795 -3.8073 -1.3094 37 1 2.0642 -3.3106 -2.9496 38 1 3.8576 -2.2697 -4.1339 39 1 4.6647 -5.2184 -4.0154 40 1 4.0585 -0.0984 -1.3654 41 1 3.7275 -1.3135 -0.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:51 Heat of formation + Delta-G solvation = 68.724581 kcal Electronic energy + Delta-G solvation = -27165.602695 eV Core-core repulsion = 23369.048859 eV Total energy + Delta-G solvation = -3796.553836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.42019 -38.97489 -38.06824 -35.91482 -35.43693 -32.78568 -32.13388 -31.23392 -29.49250 -28.72593 -27.75365 -25.29832 -24.56674 -24.31241 -23.37157 -21.83884 -20.23877 -19.54532 -19.01460 -18.22857 -17.90782 -16.99761 -16.66599 -15.98984 -15.63105 -15.27438 -14.83280 -14.52766 -13.94103 -13.73359 -13.54581 -13.50573 -12.93783 -12.84114 -12.72333 -12.46436 -12.21715 -12.16031 -11.92828 -11.72716 -11.53684 -11.28840 -11.17559 -11.05465 -10.98735 -10.88780 -10.70234 -10.45853 -10.40813 -10.14441 -9.86731 -9.22400 -8.73206 -8.70759 -8.61407 -8.24886 -8.06039 -6.22939 -4.30599 0.34743 1.25375 1.35762 1.74025 2.16013 2.83353 2.88225 3.20755 3.29409 3.34341 3.44212 4.13515 4.25355 4.39529 4.77575 4.84559 4.92228 5.06110 5.18902 5.24372 5.33933 5.50072 5.53621 5.69718 5.73276 5.80505 5.81474 5.92714 5.96980 6.04070 6.08356 6.13245 6.16648 6.37942 6.45775 6.76299 6.97083 7.22458 7.32661 7.44587 7.49248 7.78912 8.13050 8.22791 8.71238 9.38114 9.51098 10.84256 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.004043 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.003445 B = 6924.558768 C = 8586.728990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.126 0.874 4 C 0.175 3.825 5 N -0.481 5.481 6 C 0.227 3.773 7 C -0.121 4.121 8 C -0.097 4.097 9 C -0.137 4.137 10 C -0.215 4.215 11 S 0.181 5.819 12 N -0.366 5.366 13 O 0.095 5.905 14 N -0.491 5.491 15 C 0.027 3.973 16 C -0.128 4.128 17 C 0.260 3.740 18 O -0.579 6.579 19 C -0.537 4.537 20 H 0.058 0.942 21 C 0.074 3.926 22 N -0.893 5.893 23 Si 0.896 3.104 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.050 3.950 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.379 0.621 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 7.438 14.970 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.144 0.856 4 C -0.048 4.048 5 N -0.215 5.215 6 C -0.043 4.043 7 C -0.240 4.240 8 C -0.131 4.131 9 C -0.167 4.167 10 C -0.352 4.352 11 S 0.446 5.554 12 N -0.072 5.072 13 O 0.034 5.966 14 N -0.213 5.213 15 C -0.101 4.101 16 C -0.167 4.167 17 C 0.220 3.780 18 O -0.387 6.387 19 C -0.576 4.576 20 H 0.076 0.924 21 C -0.128 4.128 22 N -0.532 5.532 23 Si 0.724 3.276 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.077 4.077 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.229 0.771 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.102 9.308 14.887 18.587 hybrid contribution 1.149 -3.263 0.997 3.601 sum -4.952 6.045 15.883 17.702 Atomic orbital electron populations 1.21982 0.91605 1.03626 1.03426 1.21230 0.96745 0.98293 0.79034 0.85602 1.30351 0.94817 0.81371 0.98221 1.72013 1.17664 1.29916 1.01897 1.22680 1.01421 0.84677 0.95571 1.21284 1.10172 0.98377 0.94165 1.20380 0.99461 1.00030 0.93250 1.20023 1.02709 0.95882 0.98074 1.26016 1.08197 0.97846 1.03167 1.84397 1.57268 1.06097 1.07662 1.75002 1.15025 1.22572 0.94604 1.85434 1.57606 1.26833 1.26690 1.65130 1.06138 1.20764 1.29278 1.23157 0.98767 0.88697 0.99430 1.22945 0.95542 0.97456 1.00787 1.19269 0.91529 0.86718 0.80518 1.86125 1.96631 1.38731 1.17257 1.21574 1.10512 1.09379 1.16098 0.92402 1.24946 0.96579 0.96767 0.94532 1.69730 1.37802 1.25970 1.19683 0.86466 0.82750 0.79857 0.78550 1.19793 1.20798 1.20670 1.23317 0.85975 1.00220 0.98147 0.91405 0.91687 0.89449 0.83476 0.83591 0.81218 0.93945 0.90819 0.91746 0.91135 0.77150 0.92365 0.90195 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.86 37.16 0.33 -1.37 16 2 C 0.16 2.36 3.19 -68.87 -0.22 2.14 16 3 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 4 C 0.18 2.96 5.05 -12.98 -0.07 2.89 16 5 N -0.48 -8.30 11.58 -9.88 -0.11 -8.41 16 6 C 0.23 3.97 8.02 -156.04 -1.25 2.72 16 7 C -0.12 -1.78 6.44 -36.90 -0.24 -2.02 16 8 C -0.10 -1.23 10.05 -40.93 -0.41 -1.65 16 9 C -0.14 -1.35 10.16 -41.32 -0.42 -1.77 16 10 C -0.22 -1.97 11.23 29.14 0.33 -1.64 16 11 S 0.18 2.11 23.32 -107.50 -2.51 -0.40 16 12 N -0.37 -6.85 12.16 30.99 0.38 -6.47 16 13 O 0.10 1.77 8.52 17.99 0.15 1.92 16 14 N -0.49 -8.89 5.40 -223.89 -1.21 -10.10 16 15 C 0.03 0.49 4.92 -2.75 -0.01 0.48 16 16 C -0.13 -2.90 5.26 -25.37 -0.13 -3.03 16 17 C 0.26 6.39 0.95 -89.91 -0.09 6.30 16 18 O -0.58 -14.88 13.10 -35.23 -0.46 -15.35 16 19 C -0.54 -14.56 8.14 -34.44 -0.28 -14.84 16 20 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 21 C 0.07 1.98 5.28 -17.82 -0.09 1.88 16 22 N -0.89 -23.66 11.00 55.43 0.61 -23.05 16 23 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.05 1.08 5.44 -1.90 -0.01 1.07 16 28 H 0.07 0.79 6.49 -51.93 -0.34 0.46 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.04 0.74 4.80 -51.93 -0.25 0.49 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.56 7.84 -51.93 -0.41 1.15 16 37 H 0.07 1.65 7.98 -51.93 -0.41 1.24 16 38 H 0.38 9.82 7.46 45.56 0.34 10.16 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.04 0.93 5.76 -51.93 -0.30 0.63 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -29.52 350.24 -9.75 -39.27 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.29 Total: 10.13 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.57 Total: -8.83 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.34 Total: -48.03 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.31 Total: -13.42 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.51 Total: -0.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.52 -9.75 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.996 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds