Wall clock time and date at job start Tue Mar 31 2020 19:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50690 * 109.46993 * 120.00315 * 2 1 3 5 5 N 1.30931 * 126.40160 * 254.99467 * 4 2 1 6 6 C 1.35394 * 105.57794 * 179.97438 * 5 4 2 7 7 C 1.47733 * 126.45040 * 179.97438 * 6 5 4 8 8 C 1.34858 * 125.27449 * 179.97438 * 7 6 5 9 9 C 1.37820 * 114.72242 * 180.02562 * 8 7 6 10 10 C 1.33711 * 115.07372 * 0.02562 * 9 8 7 11 11 S 1.75863 * 109.75007 * 359.97438 * 10 9 8 12 12 N 1.31040 * 107.10184 * 0.23409 * 6 5 4 13 13 O 1.21289 * 110.04126 * 359.59774 * 12 6 5 14 14 N 1.46899 * 109.46894 * 240.00306 * 2 1 3 15 15 C 1.47898 * 111.00138 * 309.87479 * 14 2 1 16 16 C 1.53996 * 107.05706 * 214.16077 * 15 14 2 17 17 C 1.54602 * 105.13929 * 1.21863 * 16 15 14 18 18 O 1.42900 * 110.72694 * 263.42430 * 17 16 15 19 19 C 1.50706 * 110.72026 * 140.31830 * 17 16 15 20 20 H 1.07994 * 119.99781 * 241.45549 * 19 17 16 21 21 C 1.37877 * 119.99753 * 61.45675 * 19 17 16 22 22 N 1.31517 * 120.00231 * 359.97438 * 21 19 17 23 23 Si 1.86807 * 119.99578 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47296 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46910 * 120.00370 * 23 21 19 26 26 H 1.48494 * 109.46807 * 239.99860 * 23 21 19 27 27 C 1.48540 * 110.99707 * 192.47514 * 14 2 1 28 28 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46971 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.46746 * 59.99648 * 1 2 3 31 31 H 1.08002 * 122.63541 * 359.97438 * 8 7 6 32 32 H 1.08008 * 122.46100 * 180.02562 * 9 8 7 33 33 H 1.08002 * 125.12441 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.91600 * 333.50671 * 15 14 2 35 35 H 1.08991 * 109.91905 * 94.80163 * 15 14 2 36 36 H 1.08997 * 110.31224 * 120.14269 * 16 15 14 37 37 H 1.08999 * 110.30637 * 242.30950 * 16 15 14 38 38 H 0.96706 * 113.99891 * 298.55346 * 18 17 16 39 39 H 0.97003 * 119.99806 * 180.02562 * 22 21 19 40 40 H 1.09000 * 110.66505 * 278.15598 * 27 14 2 41 41 H 1.08993 * 110.66622 * 41.28640 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.5485 -0.1498 2.2950 6 6 2.8523 -1.1697 3.1320 7 6 3.4618 -1.0532 4.4727 8 6 3.7543 -2.0870 5.2878 9 6 4.3193 -1.7289 6.4927 10 6 4.4906 -0.4147 6.6700 11 16 3.9174 0.4557 5.2535 12 7 2.5092 -2.2802 2.5267 13 8 2.0337 -2.0309 1.4391 14 7 2.0197 -0.6924 -1.1995 15 6 1.3617 -2.0075 -1.3580 16 6 2.4019 -2.9617 -1.9737 17 6 3.6877 -2.1161 -2.1218 18 8 3.7986 -1.5920 -3.4465 19 6 4.9054 -2.9311 -1.7691 20 1 5.5355 -2.6314 -0.9448 21 6 5.2148 -4.0592 -2.4988 22 7 4.4472 -4.4245 -3.5023 23 14 6.7246 -5.0690 -2.0620 24 1 7.4153 -4.4504 -0.9022 25 1 6.3111 -6.4518 -1.7127 26 1 7.6477 -5.1072 -3.2245 27 6 3.4737 -0.9771 -1.0935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5601 -3.1145 5.0178 32 1 4.6029 -2.4565 7.2390 33 1 4.9175 0.0431 7.5501 34 1 1.0433 -2.3830 -0.3855 35 1 0.5030 -1.9153 -2.0228 36 1 2.5795 -3.8073 -1.3094 37 1 2.0642 -3.3106 -2.9496 38 1 3.8576 -2.2697 -4.1339 39 1 4.6647 -5.2184 -4.0154 40 1 4.0585 -0.0984 -1.3654 41 1 3.7275 -1.3135 -0.0883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:50 Heat of formation + Delta-G solvation = 45.997450 kcal Electronic energy + Delta-G solvation = -27166.588217 eV Core-core repulsion = 23369.048859 eV Total energy + Delta-G solvation = -3797.539358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.73828 -40.55457 -38.98483 -37.49108 -36.86238 -34.29110 -34.18426 -32.55311 -30.53017 -30.29888 -29.49457 -26.43948 -26.27246 -25.65743 -24.55682 -23.12915 -21.67638 -21.34706 -19.97690 -19.55200 -19.17065 -18.90604 -17.90243 -17.33132 -17.01272 -16.64926 -16.55607 -16.16404 -15.47585 -15.10456 -14.83370 -14.55174 -14.45842 -14.01802 -13.92015 -13.78600 -13.70418 -13.40376 -13.26447 -13.11611 -13.01490 -12.89030 -12.71668 -12.61152 -12.43308 -12.33375 -12.23618 -12.17093 -11.84852 -11.72719 -11.41823 -11.14201 -10.64902 -10.13816 -9.73572 -9.68500 -9.59274 -8.27394 -6.42128 -0.66482 0.10341 0.33494 0.89615 1.09803 1.31956 1.35377 1.45062 1.61002 1.79440 2.26299 2.32462 2.88746 2.93778 2.98751 3.63868 3.72997 3.85332 4.01875 4.06958 4.15213 4.28045 4.31427 4.33044 4.39396 4.52834 4.61060 4.68269 4.72049 4.85767 4.90066 4.96405 5.00866 5.15515 5.16487 5.22052 5.31328 5.44356 5.52684 5.63634 5.76555 5.88136 6.14632 6.61062 6.91877 7.29378 7.45345 8.78276 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.004043 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.003445 B = 6924.558768 C = 8586.728990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.158 3.842 3 H 0.142 0.858 4 C 0.176 3.824 5 N -0.491 5.491 6 C 0.230 3.770 7 C -0.174 4.174 8 C -0.089 4.089 9 C -0.147 4.147 10 C -0.183 4.183 11 S 0.178 5.822 12 N -0.395 5.395 13 O 0.074 5.926 14 N -0.486 5.486 15 C 0.037 3.963 16 C -0.120 4.120 17 C 0.245 3.755 18 O -0.584 6.584 19 C -0.565 4.565 20 H 0.039 0.961 21 C 0.039 3.961 22 N -0.903 5.903 23 Si 0.949 3.051 24 H -0.281 1.281 25 H -0.276 1.276 26 H -0.271 1.271 27 C 0.061 3.939 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.179 0.821 33 H 0.211 0.789 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.374 0.626 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 8.313 16.827 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.046 3.954 3 H 0.160 0.840 4 C -0.047 4.047 5 N -0.224 5.224 6 C -0.041 4.041 7 C -0.293 4.293 8 C -0.125 4.125 9 C -0.176 4.176 10 C -0.320 4.320 11 S 0.442 5.558 12 N -0.106 5.106 13 O 0.017 5.983 14 N -0.208 5.208 15 C -0.090 4.090 16 C -0.159 4.159 17 C 0.205 3.795 18 O -0.392 6.392 19 C -0.604 4.604 20 H 0.057 0.943 21 C -0.163 4.163 22 N -0.541 5.541 23 Si 0.775 3.225 24 H -0.206 1.206 25 H -0.201 1.201 26 H -0.197 1.197 27 C -0.066 4.066 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.196 0.804 33 H 0.228 0.772 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.223 0.777 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.404 10.193 16.713 20.597 hybrid contribution 1.300 -3.506 0.540 3.778 sum -5.104 6.687 17.253 19.195 Atomic orbital electron populations 1.22008 0.88485 1.04126 1.05329 1.21553 0.99077 0.97984 0.76751 0.84040 1.30749 0.94186 0.81030 0.98687 1.72011 1.18151 1.30063 1.02223 1.23215 1.00215 0.84244 0.96414 1.21521 1.13214 1.00555 0.94019 1.20645 0.98320 0.99480 0.94026 1.20290 1.02705 0.97016 0.97572 1.26526 1.05470 0.97226 1.02762 1.84345 1.57383 1.05304 1.08742 1.74965 1.16994 1.23518 0.95132 1.85375 1.58331 1.27564 1.26986 1.65090 1.03868 1.20494 1.31372 1.23086 0.98005 0.87779 1.00152 1.22708 0.96067 0.97324 0.99770 1.19438 0.91561 0.88029 0.80454 1.86111 1.96719 1.38721 1.17655 1.21776 1.11760 1.10670 1.16160 0.94311 1.25537 0.98828 0.97410 0.94499 1.69783 1.38464 1.26157 1.19744 0.85649 0.80024 0.78601 0.78199 1.20578 1.20100 1.19657 1.23031 0.88434 0.98796 0.96368 0.91602 0.89808 0.87500 0.84161 0.80422 0.77228 0.92993 0.88170 0.94363 0.92377 0.77684 0.91970 0.90758 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.86 71.98 0.64 -2.25 16 2 C 0.16 4.49 3.19 44.17 0.14 4.63 16 3 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 4 C 0.18 5.96 5.05 88.35 0.45 6.40 16 5 N -0.49 -17.09 11.58 -302.28 -3.50 -20.59 16 6 C 0.23 8.22 8.02 136.95 1.10 9.32 16 7 C -0.17 -5.14 6.44 24.01 0.15 -4.99 16 8 C -0.09 -2.21 10.05 21.39 0.22 -2.00 16 9 C -0.15 -2.51 10.16 21.14 0.21 -2.29 16 10 C -0.18 -2.72 11.23 66.79 0.75 -1.97 16 11 S 0.18 3.90 23.32 -56.49 -1.32 2.59 16 12 N -0.40 -15.38 12.16 -58.78 -0.72 -16.10 16 13 O 0.07 2.82 8.52 74.45 0.63 3.45 16 14 N -0.49 -17.28 5.40 -862.25 -4.65 -21.94 16 15 C 0.04 1.33 4.92 86.45 0.43 1.75 16 16 C -0.12 -5.53 5.26 31.48 0.17 -5.36 16 17 C 0.25 12.38 0.95 -10.33 -0.01 12.37 16 18 O -0.58 -30.61 13.10 -148.98 -1.95 -32.56 16 19 C -0.57 -31.70 8.14 25.60 0.21 -31.49 16 20 H 0.04 2.25 7.78 -2.91 -0.02 2.23 16 21 C 0.04 2.11 5.28 84.65 0.45 2.55 16 22 N -0.90 -48.51 11.00 21.45 0.24 -48.27 16 23 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C 0.06 2.70 5.44 86.65 0.47 3.18 16 28 H 0.06 1.39 6.49 -2.39 -0.02 1.37 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.05 1.79 4.80 -2.38 -0.01 1.78 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.04 1.92 7.84 -2.39 -0.02 1.90 16 37 H 0.06 2.77 7.98 -2.39 -0.02 2.75 16 38 H 0.37 19.87 7.46 -74.05 -0.55 19.31 16 39 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 40 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.03 1.26 5.76 -2.39 -0.01 1.25 16 Total: -1.00 -66.30 350.24 -3.35 -69.65 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.53 Total: 28.18 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.36 Total: -10.14 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -8.63 Total: -106.89 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.32 Total: -29.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.32 Total: 2.59 kcal Total: -66.30 -3.35 -69.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.644 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds