Wall clock time and date at job start Tue Mar 31 2020 19:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.50693 * 109.47348 * 239.99045 * 2 1 3 5 5 N 1.30937 * 126.39919 * 105.34013 * 4 2 1 6 6 C 1.35392 * 105.57291 * 180.10626 * 5 4 2 7 7 C 1.47734 * 126.44695 * 179.84750 * 6 5 4 8 8 C 1.34850 * 125.27435 * 179.71559 * 7 6 5 9 9 C 1.37830 * 114.72544 * 179.97438 * 8 7 6 10 10 C 1.33717 * 115.06783 * 0.27478 * 9 8 7 11 11 S 1.75860 * 109.74760 * 359.59247 * 10 9 8 12 12 N 1.31033 * 107.10530 * 359.58276 * 6 5 4 13 13 O 1.21290 * 110.04057 * 0.26509 * 12 6 5 14 14 N 1.46911 * 109.46754 * 119.99151 * 2 1 3 15 15 C 1.48535 * 110.99595 * 177.60515 * 14 2 1 16 16 C 1.54935 * 103.22409 * 159.72109 * 15 14 2 17 17 C 1.54590 * 102.92470 * 322.58815 * 16 15 14 18 18 O 1.42906 * 110.39131 * 262.99943 * 17 16 15 19 19 C 1.50701 * 110.31191 * 140.87090 * 17 16 15 20 20 H 1.07996 * 120.00170 * 244.27661 * 19 17 16 21 21 C 1.37883 * 119.99554 * 64.28925 * 19 17 16 22 22 N 1.31510 * 120.00239 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99618 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47162 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47385 * 119.99203 * 23 21 19 26 26 H 1.48495 * 109.47047 * 239.99493 * 23 21 19 27 27 C 1.47894 * 111.00161 * 294.99838 * 14 2 1 28 28 H 1.08996 * 109.47082 * 300.00255 * 1 2 3 29 29 H 1.09002 * 109.46718 * 60.00896 * 1 2 3 30 30 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.07995 * 122.63882 * 359.95832 * 8 7 6 32 32 H 1.08002 * 122.46219 * 179.97438 * 9 8 7 33 33 H 1.08006 * 125.12194 * 179.70563 * 10 9 8 34 34 H 1.09001 * 110.66826 * 278.15235 * 15 14 2 35 35 H 1.08994 * 110.66694 * 41.28895 * 15 14 2 36 36 H 1.08996 * 110.72574 * 204.22256 * 16 15 14 37 37 H 1.09007 * 110.72526 * 80.94480 * 16 15 14 38 38 H 0.96701 * 113.99850 * 295.76176 * 18 17 16 39 39 H 0.97003 * 119.99825 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.91854 * 333.51248 * 27 14 2 41 41 H 1.09008 * 109.91751 * 94.60866 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 7 2.5543 -0.1503 -2.2924 6 6 2.8539 -1.1701 -3.1312 7 6 3.4636 -1.0536 -4.4717 8 6 3.7573 -2.0875 -5.2862 9 6 4.3224 -1.7296 -6.4913 10 6 4.4983 -0.4157 -6.6665 11 16 3.9183 0.4552 -5.2531 12 7 2.5065 -2.2801 -2.5277 13 8 2.0347 -2.0310 -1.4385 14 7 2.0196 -0.6924 1.1996 15 6 3.5033 -0.7626 1.2053 16 6 3.8406 -1.0119 2.6968 17 6 2.7913 -0.1512 3.4372 18 8 3.3514 1.1117 3.8026 19 6 2.2910 -0.8744 4.6610 20 1 1.2551 -1.1728 4.7261 21 6 3.1557 -1.1547 5.6977 22 7 4.4172 -0.7915 5.6183 23 14 2.5357 -2.0517 7.2144 24 1 1.0891 -2.3483 7.0573 25 1 3.2867 -3.3221 7.3798 26 1 2.7382 -1.1975 8.4121 27 6 1.6462 0.0444 2.4264 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.5651 -3.1151 -5.0154 32 1 4.6069 -2.4572 -7.2370 33 1 4.9297 0.0418 -7.5447 34 1 3.8516 -1.5910 0.5885 35 1 3.9343 0.1792 0.8657 36 1 4.8502 -0.6711 2.9262 37 1 3.7217 -2.0659 2.9483 38 1 4.0779 1.0507 4.4378 39 1 5.0256 -0.9891 6.3475 40 1 1.5266 1.1042 2.2012 41 1 0.7168 -0.3561 2.8317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:54 Heat of formation + Delta-G solvation = 65.620508 kcal Electronic energy + Delta-G solvation = -26324.826835 eV Core-core repulsion = 22528.138396 eV Total energy + Delta-G solvation = -3796.688439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.51022 -38.85058 -38.17944 -36.01910 -35.45762 -33.12171 -32.10380 -31.37859 -29.61067 -28.28648 -27.88246 -25.43167 -25.19097 -23.94465 -23.26338 -21.67998 -20.60665 -19.36686 -19.12211 -18.34979 -18.01454 -17.16513 -16.71495 -15.98934 -15.66779 -15.54636 -14.88304 -14.06174 -14.03460 -13.87766 -13.70111 -13.62561 -13.04303 -12.86657 -12.81879 -12.34902 -12.18982 -12.17066 -11.91954 -11.84538 -11.54418 -11.41705 -11.28679 -11.12769 -11.03824 -10.95773 -10.72138 -10.46993 -10.38143 -10.28021 -10.00402 -9.24152 -8.84407 -8.81011 -8.62208 -8.18072 -8.07072 -6.22977 -4.29093 0.23399 1.15565 1.23510 1.64795 2.04324 2.70829 2.81023 3.22088 3.27144 3.31154 3.35340 3.91410 4.30619 4.38322 4.68384 4.75219 4.97423 5.07984 5.12366 5.20162 5.23216 5.42700 5.50299 5.67137 5.70102 5.79287 5.82312 5.86203 5.95294 5.99502 6.04715 6.12056 6.18717 6.28441 6.35516 6.82713 6.92136 7.12581 7.34175 7.48784 7.53462 7.80022 8.09777 8.11388 8.72758 9.37650 9.48066 10.84877 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.002513 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.495999 B =11140.802995 C =11254.453387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.160 3.840 3 H 0.089 0.911 4 C 0.219 3.781 5 N -0.482 5.482 6 C 0.230 3.770 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.138 4.138 10 C -0.214 4.214 11 S 0.185 5.815 12 N -0.372 5.372 13 O 0.104 5.896 14 N -0.505 5.505 15 C 0.026 3.974 16 C -0.116 4.116 17 C 0.244 3.756 18 O -0.595 6.595 19 C -0.527 4.527 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.058 3.942 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.385 0.615 39 H 0.267 0.733 40 H 0.043 0.957 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 1.160 -20.559 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.049 3.951 3 H 0.106 0.894 4 C -0.002 4.002 5 N -0.216 5.216 6 C -0.041 4.041 7 C -0.243 4.243 8 C -0.130 4.130 9 C -0.168 4.168 10 C -0.351 4.351 11 S 0.449 5.551 12 N -0.078 5.078 13 O 0.042 5.958 14 N -0.231 5.231 15 C -0.101 4.101 16 C -0.154 4.154 17 C 0.204 3.796 18 O -0.405 6.405 19 C -0.566 4.566 20 H 0.083 0.917 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.069 4.069 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.188 0.812 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.205 1.956 -21.078 21.283 hybrid contribution 0.733 -1.478 0.877 1.868 sum -1.472 0.478 -20.201 20.260 Atomic orbital electron populations 1.21883 0.91211 1.03986 1.03102 1.20468 0.96911 0.94365 0.83380 0.89394 1.28649 0.93758 0.80945 0.96871 1.72064 1.17728 1.29735 1.02084 1.22659 1.01196 0.84665 0.95557 1.21289 1.10402 0.98467 0.94184 1.20362 0.99494 0.99953 0.93230 1.20029 1.02801 0.95901 0.98094 1.26049 1.07927 0.97868 1.03252 1.84494 1.56824 1.05926 1.07810 1.75030 1.15489 1.22541 0.94746 1.85357 1.57436 1.26780 1.26243 1.65038 1.11162 1.46762 1.00173 1.23388 0.86917 0.99101 1.00722 1.22992 1.00459 1.02004 0.89982 1.19330 0.87612 0.81401 0.91262 1.86075 1.55665 1.32027 1.66704 1.21705 0.96579 1.36701 1.01580 0.91718 1.25020 0.94709 0.95026 0.98647 1.69620 1.03605 1.47647 1.33106 0.86393 0.79155 0.79261 0.82330 1.19595 1.20931 1.20947 1.22910 1.00308 0.95268 0.88401 0.89941 0.91838 0.90710 0.83493 0.83561 0.81168 0.92017 0.94316 0.91436 0.91062 0.76299 0.92343 0.93863 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.16 37.16 0.34 -1.41 16 2 C 0.16 2.41 2.33 -68.86 -0.16 2.25 16 3 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 4 C 0.22 3.45 6.17 -12.97 -0.08 3.37 16 5 N -0.48 -7.76 11.58 -9.89 -0.11 -7.87 16 6 C 0.23 3.59 8.02 -156.05 -1.25 2.34 16 7 C -0.12 -1.62 6.44 -36.90 -0.24 -1.86 16 8 C -0.10 -1.05 10.05 -40.93 -0.41 -1.46 16 9 C -0.14 -1.16 10.16 -41.32 -0.42 -1.58 16 10 C -0.21 -1.69 11.23 29.15 0.33 -1.37 16 11 S 0.18 1.94 23.32 -107.50 -2.51 -0.57 16 12 N -0.37 -6.10 12.16 30.98 0.38 -5.72 16 13 O 0.10 1.72 11.29 18.02 0.20 1.92 16 14 N -0.50 -9.12 5.10 -223.88 -1.14 -10.26 16 15 C 0.03 0.51 5.71 -1.90 -0.01 0.49 16 16 C -0.12 -2.61 5.49 -24.87 -0.14 -2.75 16 17 C 0.24 5.79 0.99 -90.42 -0.09 5.70 16 18 O -0.59 -14.91 12.93 -35.23 -0.46 -15.36 16 19 C -0.53 -13.61 8.10 -34.44 -0.28 -13.89 16 20 H 0.06 1.66 7.35 -52.49 -0.39 1.27 16 21 C 0.07 1.75 5.26 -17.82 -0.09 1.65 16 22 N -0.90 -23.53 10.88 55.43 0.60 -22.92 16 23 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.06 1.15 5.01 -2.76 -0.01 1.14 16 28 H 0.08 0.96 7.35 -51.93 -0.38 0.58 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 35 H 0.04 0.75 8.02 -51.93 -0.42 0.33 16 36 H 0.07 1.60 8.06 -51.93 -0.42 1.18 16 37 H 0.07 1.71 7.86 -51.92 -0.41 1.31 16 38 H 0.39 9.92 7.05 45.56 0.32 10.24 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 40 H 0.04 0.83 7.47 -51.93 -0.39 0.44 16 41 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -28.04 357.47 -9.72 -37.76 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.54 Total: 9.68 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.52 Total: -7.37 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.28 Total: -46.77 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.25 Total: -13.44 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.51 Total: -0.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.04 -9.72 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.383 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds