Wall clock time and date at job start Tue Mar 31 2020 19:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47226 * 2 1 4 4 C 1.50699 * 109.47556 * 239.99774 * 2 1 3 5 5 N 1.30319 * 126.15854 * 285.04370 * 4 2 1 6 6 N 1.28657 * 109.59053 * 179.72640 * 5 4 2 7 7 C 1.31529 * 109.22582 * 0.38310 * 6 5 4 8 8 C 1.47051 * 126.41476 * 179.88211 * 7 6 5 9 9 C 1.36155 * 125.33351 * 359.69358 * 8 7 6 10 10 C 1.37743 * 114.44387 * 179.97438 * 9 8 7 11 11 C 1.33707 * 115.19138 * 0.24875 * 10 9 8 12 12 S 1.75823 * 109.95828 * 359.63241 * 11 10 9 13 13 O 1.34551 * 126.16328 * 104.99759 * 4 2 1 14 14 N 1.46898 * 109.46957 * 119.99557 * 2 1 3 15 15 C 1.47842 * 111.00138 * 301.80485 * 14 2 1 16 16 C 1.54910 * 104.79946 * 213.63621 * 15 14 2 17 17 C 1.55137 * 101.64978 * 37.06773 * 16 15 14 18 18 O 1.42910 * 110.70376 * 82.73273 * 17 16 15 19 19 C 1.50703 * 110.70804 * 205.96319 * 17 16 15 20 20 H 1.07992 * 119.99908 * 113.59995 * 19 17 16 21 21 C 1.37881 * 119.99694 * 293.60571 * 19 17 16 22 22 N 1.31511 * 120.00292 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99724 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46673 * 89.99804 * 23 21 19 25 25 H 1.48498 * 109.47228 * 209.99768 * 23 21 19 26 26 H 1.48498 * 109.46953 * 330.00136 * 23 21 19 27 27 C 1.47452 * 111.00089 * 180.96300 * 14 2 1 28 28 H 1.09001 * 109.46968 * 65.70612 * 1 2 3 29 29 H 1.08996 * 109.47173 * 185.70301 * 1 2 3 30 30 H 1.08997 * 109.47093 * 305.71062 * 1 2 3 31 31 H 1.08000 * 122.78046 * 0.02562 * 9 8 7 32 32 H 1.08001 * 122.40452 * 179.97438 * 10 9 8 33 33 H 1.08006 * 125.01729 * 179.74674 * 11 10 9 34 34 H 1.08998 * 110.37819 * 332.46728 * 15 14 2 35 35 H 1.08998 * 110.37524 * 94.80850 * 15 14 2 36 36 H 1.09002 * 110.98885 * 278.97807 * 16 15 14 37 37 H 1.09001 * 111.02448 * 155.17844 * 16 15 14 38 38 H 0.96704 * 113.99730 * 66.39918 * 18 17 16 39 39 H 0.97005 * 120.00189 * 180.02562 * 22 21 19 40 40 H 1.09002 * 109.88795 * 242.66221 * 27 14 2 41 41 H 1.08996 * 109.88755 * 3.85430 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0313 -1.9984 -1.4289 6 7 2.5269 -2.2567 -2.5878 7 6 2.8728 -1.1301 -3.1718 8 6 3.4788 -0.9876 -4.5040 9 6 3.7835 -2.0146 -5.3444 10 6 4.3451 -1.6250 -6.5403 11 6 4.5087 -0.3064 -6.6894 12 16 3.9230 0.5363 -5.2618 13 8 2.5622 -0.1292 -2.3221 14 7 2.0196 -0.6924 1.1995 15 6 1.5104 -0.0475 2.4285 16 6 2.6489 -0.2171 3.4652 17 6 3.9092 -0.0364 2.5788 18 8 4.2002 1.3501 2.3910 19 6 5.0906 -0.7536 3.1797 20 1 5.5215 -1.6038 2.6719 21 6 5.6212 -0.3245 4.3778 22 7 5.0966 0.7110 4.9959 23 14 7.0851 -1.2140 5.1229 24 1 8.3427 -0.5969 4.6297 25 1 7.0285 -1.1069 6.6029 26 1 7.0480 -2.6451 4.7283 27 6 3.4934 -0.6921 1.2452 28 1 -0.3633 0.4228 -0.9367 29 1 -0.3633 -1.0225 0.1021 30 1 -0.3633 0.5998 0.8344 31 1 3.5993 -3.0490 -5.0944 32 1 4.6366 -2.3341 -7.3010 33 1 4.9358 0.1706 -7.5593 34 1 1.3148 1.0097 2.2493 35 1 0.6058 -0.5485 2.7731 36 1 2.6251 -1.2110 3.9121 37 1 2.5972 0.5552 4.2327 38 1 4.4669 1.8090 3.1994 39 1 5.4702 1.0132 5.8386 40 1 3.8659 -1.7156 1.2033 41 1 3.8902 -0.1162 0.4092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:14 Heat of formation + Delta-G solvation = 38.026084 kcal Electronic energy + Delta-G solvation = -26496.612016 eV Core-core repulsion = 22698.726993 eV Total energy + Delta-G solvation = -3797.885023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.02812 -38.82167 -38.07280 -36.06383 -35.52385 -32.86412 -32.11461 -31.47900 -28.89789 -28.44182 -27.73585 -25.28141 -24.47174 -24.40434 -22.86648 -21.71340 -20.09069 -19.64467 -19.29179 -18.56360 -17.32968 -17.20432 -16.60652 -16.04599 -15.56888 -15.09214 -14.91922 -14.55730 -14.24703 -13.96911 -13.51484 -13.22051 -13.09823 -12.75525 -12.63809 -12.42166 -12.29041 -12.01289 -11.86749 -11.79200 -11.52966 -11.35315 -11.26369 -11.23384 -10.99721 -10.79552 -10.74281 -10.49028 -10.45835 -10.19154 -9.97136 -9.36139 -8.90371 -8.65438 -8.60063 -8.16525 -7.85378 -6.25014 -4.31532 0.04086 1.04839 1.44210 1.52263 2.08015 2.27785 2.71043 3.22079 3.29116 3.33785 3.76233 4.22505 4.31692 4.59386 4.67263 4.85879 4.99071 5.05410 5.09460 5.19227 5.31034 5.40028 5.50255 5.57864 5.65807 5.74835 5.80493 5.85604 5.95752 5.99721 6.02687 6.15918 6.19948 6.29336 6.43252 6.87639 6.96600 7.30793 7.41904 7.48137 7.53411 7.78639 8.08635 8.39231 8.69809 9.35804 9.46434 10.82464 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003101 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.502246 B = 9026.057838 C =10055.210197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.172 3.828 3 H 0.074 0.926 4 C 0.191 3.809 5 N -0.253 5.253 6 N -0.264 5.264 7 C 0.218 3.782 8 C -0.134 4.134 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.202 4.202 12 S 0.171 5.829 13 O -0.223 6.223 14 N -0.511 5.511 15 C 0.045 3.955 16 C -0.131 4.131 17 C 0.238 3.762 18 O -0.593 6.593 19 C -0.531 4.531 20 H 0.062 0.938 21 C 0.071 3.929 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 1.036 -18.943 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.062 3.938 3 H 0.092 0.908 4 C -0.020 4.020 5 N -0.099 5.099 6 N -0.114 5.114 7 C 0.009 3.991 8 C -0.253 4.253 9 C -0.106 4.106 10 C -0.168 4.168 11 C -0.339 4.339 12 S 0.436 5.564 13 O -0.102 6.102 14 N -0.238 5.238 15 C -0.082 4.082 16 C -0.169 4.169 17 C 0.198 3.802 18 O -0.404 6.404 19 C -0.570 4.570 20 H 0.081 0.919 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.069 4.069 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.191 0.809 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.529 0.781 -18.779 19.897 hybrid contribution 1.662 0.298 0.443 1.746 sum -4.867 1.079 -18.336 19.001 Atomic orbital electron populations 1.21880 0.91388 1.04160 1.02392 1.20218 0.96016 0.94415 0.83182 0.90844 1.28011 0.95494 0.89403 0.89047 1.74452 1.15742 1.12082 1.07647 1.74922 1.12845 1.22080 1.01553 1.23946 1.00692 0.82131 0.92318 1.21275 1.12052 0.98853 0.93136 1.20669 0.97641 1.00170 0.92122 1.20054 1.02757 0.95649 0.98342 1.26025 1.07380 0.97858 1.02674 1.84534 1.57255 1.05861 1.08762 1.84891 1.61274 1.38770 1.25310 1.63771 1.09897 1.50328 0.99754 1.23114 0.99169 0.96194 0.89682 1.23191 0.94393 1.02119 0.97236 1.19684 0.91858 0.80046 0.88641 1.86066 1.90452 1.23877 1.39989 1.21586 1.14711 1.14797 1.05887 0.91947 1.24993 0.96975 0.94882 0.96267 1.69575 1.41342 1.25458 1.17622 0.86443 0.82390 0.80223 0.78100 1.20517 1.21029 1.19667 1.22913 0.84780 1.00724 0.98503 0.92205 0.90376 0.90409 0.82556 0.83085 0.80939 0.93934 0.91126 0.91411 0.90465 0.76298 0.92236 0.89777 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.92 37.16 0.33 -1.50 16 2 C 0.17 2.88 2.19 -68.87 -0.15 2.73 16 3 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16 4 C 0.19 3.41 6.02 -12.92 -0.08 3.33 16 5 N -0.25 -4.83 12.21 32.59 0.40 -4.43 16 6 N -0.26 -4.75 12.23 31.95 0.39 -4.36 16 7 C 0.22 3.52 8.24 -14.11 -0.12 3.41 16 8 C -0.13 -1.71 6.46 -36.76 -0.24 -1.95 16 9 C -0.07 -0.74 10.12 -40.51 -0.41 -1.15 16 10 C -0.14 -1.06 10.15 -41.35 -0.42 -1.48 16 11 C -0.20 -1.48 11.21 29.14 0.33 -1.15 16 12 S 0.17 1.71 23.31 -107.50 -2.51 -0.79 16 13 O -0.22 -3.81 10.90 3.33 0.04 -3.78 16 14 N -0.51 -9.87 5.02 -224.68 -1.13 -11.00 16 15 C 0.04 0.83 5.47 -2.30 -0.01 0.82 16 16 C -0.13 -2.92 5.66 -24.59 -0.14 -3.06 16 17 C 0.24 5.88 0.86 -89.95 -0.08 5.81 16 18 O -0.59 -15.24 13.09 -35.23 -0.46 -15.71 16 19 C -0.53 -14.35 8.21 -34.44 -0.28 -14.63 16 20 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 21 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 22 N -0.90 -23.71 10.69 55.43 0.59 -23.12 16 23 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.06 1.31 5.65 -2.83 -0.02 1.29 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.90 7.18 -51.93 -0.37 0.53 16 31 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.04 0.75 7.52 -51.93 -0.39 0.36 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 37 H 0.08 1.80 7.76 -51.93 -0.40 1.40 16 38 H 0.39 10.07 6.99 45.56 0.32 10.39 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.08 2.00 7.63 -51.93 -0.40 1.61 16 41 H 0.04 0.92 7.02 -51.93 -0.36 0.56 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -29.72 357.45 -8.20 -37.92 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.51 Total: 9.89 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.38 Total: -5.76 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.25 Total: -42.92 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.42 Total: -19.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.51 Total: -0.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.72 -8.20 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.942 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds