Wall clock time and date at job start Tue Mar 31 2020 19:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47226 * 2 1 4 4 C 1.50699 * 109.47556 * 239.99774 * 2 1 3 5 5 N 1.30319 * 126.15854 * 285.04370 * 4 2 1 6 6 N 1.28657 * 109.59053 * 179.72640 * 5 4 2 7 7 C 1.31529 * 109.22582 * 0.38310 * 6 5 4 8 8 C 1.47051 * 126.41476 * 179.88211 * 7 6 5 9 9 C 1.36155 * 125.33351 * 359.69358 * 8 7 6 10 10 C 1.37743 * 114.44387 * 179.97438 * 9 8 7 11 11 C 1.33707 * 115.19138 * 0.24875 * 10 9 8 12 12 S 1.75823 * 109.95828 * 359.63241 * 11 10 9 13 13 O 1.34551 * 126.16328 * 104.99759 * 4 2 1 14 14 N 1.46898 * 109.46957 * 119.99557 * 2 1 3 15 15 C 1.47842 * 111.00138 * 301.80485 * 14 2 1 16 16 C 1.54910 * 104.79946 * 213.63621 * 15 14 2 17 17 C 1.55137 * 101.64978 * 37.06773 * 16 15 14 18 18 O 1.42910 * 110.70376 * 82.73273 * 17 16 15 19 19 C 1.50703 * 110.70804 * 205.96319 * 17 16 15 20 20 H 1.07992 * 119.99908 * 113.59995 * 19 17 16 21 21 C 1.37881 * 119.99694 * 293.60571 * 19 17 16 22 22 N 1.31511 * 120.00292 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99724 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46673 * 89.99804 * 23 21 19 25 25 H 1.48498 * 109.47228 * 209.99768 * 23 21 19 26 26 H 1.48498 * 109.46953 * 330.00136 * 23 21 19 27 27 C 1.47452 * 111.00089 * 180.96300 * 14 2 1 28 28 H 1.09001 * 109.46968 * 65.70612 * 1 2 3 29 29 H 1.08996 * 109.47173 * 185.70301 * 1 2 3 30 30 H 1.08997 * 109.47093 * 305.71062 * 1 2 3 31 31 H 1.08000 * 122.78046 * 0.02562 * 9 8 7 32 32 H 1.08001 * 122.40452 * 179.97438 * 10 9 8 33 33 H 1.08006 * 125.01729 * 179.74674 * 11 10 9 34 34 H 1.08998 * 110.37819 * 332.46728 * 15 14 2 35 35 H 1.08998 * 110.37524 * 94.80850 * 15 14 2 36 36 H 1.09002 * 110.98885 * 278.97807 * 16 15 14 37 37 H 1.09001 * 111.02448 * 155.17844 * 16 15 14 38 38 H 0.96704 * 113.99730 * 66.39918 * 18 17 16 39 39 H 0.97005 * 120.00189 * 180.02562 * 22 21 19 40 40 H 1.09002 * 109.88795 * 242.66221 * 27 14 2 41 41 H 1.08996 * 109.88755 * 3.85430 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.0313 -1.9984 -1.4289 6 7 2.5269 -2.2567 -2.5878 7 6 2.8728 -1.1301 -3.1718 8 6 3.4788 -0.9876 -4.5040 9 6 3.7835 -2.0146 -5.3444 10 6 4.3451 -1.6250 -6.5403 11 6 4.5087 -0.3064 -6.6894 12 16 3.9230 0.5363 -5.2618 13 8 2.5622 -0.1292 -2.3221 14 7 2.0196 -0.6924 1.1995 15 6 1.5104 -0.0475 2.4285 16 6 2.6489 -0.2171 3.4652 17 6 3.9092 -0.0364 2.5788 18 8 4.2002 1.3501 2.3910 19 6 5.0906 -0.7536 3.1797 20 1 5.5215 -1.6038 2.6719 21 6 5.6212 -0.3245 4.3778 22 7 5.0966 0.7110 4.9959 23 14 7.0851 -1.2140 5.1229 24 1 8.3427 -0.5969 4.6297 25 1 7.0285 -1.1069 6.6029 26 1 7.0480 -2.6451 4.7283 27 6 3.4934 -0.6921 1.2452 28 1 -0.3633 0.4228 -0.9367 29 1 -0.3633 -1.0225 0.1021 30 1 -0.3633 0.5998 0.8344 31 1 3.5993 -3.0490 -5.0944 32 1 4.6366 -2.3341 -7.3010 33 1 4.9358 0.1706 -7.5593 34 1 1.3148 1.0097 2.2493 35 1 0.6058 -0.5485 2.7731 36 1 2.6251 -1.2110 3.9121 37 1 2.5972 0.5552 4.2327 38 1 4.4669 1.8090 3.1994 39 1 5.4702 1.0132 5.8386 40 1 3.8659 -1.7156 1.2033 41 1 3.8902 -0.1162 0.4092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:13 Heat of formation + Delta-G solvation = 12.977161 kcal Electronic energy + Delta-G solvation = -26497.698219 eV Core-core repulsion = 22698.726993 eV Total energy + Delta-G solvation = -3798.971226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.32121 -40.47899 -38.83402 -37.39569 -37.23971 -34.33929 -34.16679 -32.64823 -30.35312 -29.88383 -29.26724 -26.38466 -26.20937 -25.70106 -23.89365 -23.14480 -21.61341 -21.37044 -20.25940 -19.49034 -19.20879 -18.64046 -17.87219 -17.20886 -16.97130 -16.75075 -16.43124 -16.20391 -15.75601 -15.12441 -14.80232 -14.41894 -14.21023 -13.94890 -13.78845 -13.75800 -13.62594 -13.47500 -13.32039 -13.22338 -13.12343 -12.85693 -12.76072 -12.70461 -12.58022 -12.32591 -12.22771 -12.13598 -11.90118 -11.86160 -11.33574 -11.26325 -10.68020 -10.14679 -9.65825 -9.57331 -9.43306 -8.27154 -6.41321 -0.88721 0.24959 0.34276 0.78347 0.91548 1.20269 1.37151 1.39481 1.49322 1.75063 2.35236 2.59196 2.79285 2.97359 3.37298 3.67414 3.74641 3.83174 3.99789 4.05182 4.15414 4.20995 4.27438 4.32623 4.38358 4.40652 4.47561 4.55244 4.67416 4.78442 4.84504 4.97903 5.01401 5.13653 5.15539 5.23812 5.32184 5.42257 5.53534 5.73563 5.80443 5.95399 6.10279 6.60826 7.08267 7.29057 7.39753 8.78496 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003101 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.502246 B = 9026.057838 C =10055.210197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.172 3.828 3 H 0.072 0.928 4 C 0.179 3.821 5 N -0.277 5.277 6 N -0.298 5.298 7 C 0.233 3.767 8 C -0.190 4.190 9 C -0.053 4.053 10 C -0.145 4.145 11 C -0.166 4.166 12 S 0.156 5.844 13 O -0.231 6.231 14 N -0.513 5.513 15 C 0.055 3.945 16 C -0.124 4.124 17 C 0.225 3.775 18 O -0.598 6.598 19 C -0.563 4.563 20 H 0.046 0.954 21 C 0.035 3.965 22 N -0.909 5.909 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.073 3.927 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.188 0.812 33 H 0.213 0.787 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.380 0.620 39 H 0.272 0.728 40 H 0.062 0.938 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 1.402 -20.898 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 H 0.090 0.910 4 C -0.032 4.032 5 N -0.123 5.123 6 N -0.146 5.146 7 C 0.025 3.975 8 C -0.308 4.308 9 C -0.088 4.088 10 C -0.174 4.174 11 C -0.303 4.303 12 S 0.421 5.579 13 O -0.111 6.111 14 N -0.239 5.239 15 C -0.071 4.071 16 C -0.163 4.163 17 C 0.185 3.815 18 O -0.408 6.408 19 C -0.601 4.601 20 H 0.065 0.935 21 C -0.166 4.166 22 N -0.549 5.549 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.055 4.055 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.205 0.795 33 H 0.230 0.770 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.666 1.136 -20.734 21.808 hybrid contribution 1.804 0.198 0.840 2.000 sum -4.862 1.334 -19.894 20.523 Atomic orbital electron populations 1.21884 0.88188 1.04521 1.04336 1.20399 0.98327 0.93584 0.81558 0.91035 1.28165 0.96129 0.89292 0.89647 1.74344 1.16599 1.12885 1.08493 1.74831 1.15034 1.22992 1.01788 1.24621 0.98619 0.81379 0.92925 1.21468 1.15625 1.00998 0.92704 1.21017 0.95519 0.99859 0.92450 1.20373 1.02509 0.96571 0.97940 1.26561 1.04422 0.97430 1.01934 1.84582 1.57706 1.05362 1.10271 1.84886 1.61588 1.39144 1.25468 1.63738 1.07478 1.51408 1.01268 1.23103 0.98554 0.97449 0.87956 1.22980 0.95003 1.00766 0.97503 1.19863 0.92281 0.79321 0.90084 1.86054 1.90564 1.24429 1.39775 1.21806 1.16338 1.15161 1.06818 0.93544 1.25617 0.99077 0.95560 0.96370 1.69632 1.41851 1.25696 1.17705 0.85563 0.79481 0.78896 0.77720 1.20274 1.19927 1.19992 1.22588 0.87194 0.98807 0.96909 0.90299 0.90772 0.88388 0.82496 0.79536 0.77042 0.92589 0.88039 0.92825 0.91631 0.76846 0.91843 0.91969 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.92 71.98 0.64 -2.56 16 2 C 0.17 5.71 2.19 44.17 0.10 5.81 16 3 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 4 C 0.18 6.56 6.02 88.33 0.53 7.10 16 5 N -0.28 -11.00 12.21 -165.24 -2.02 -13.01 16 6 N -0.30 -11.16 12.23 -166.49 -2.04 -13.19 16 7 C 0.23 7.78 8.24 87.05 0.72 8.50 16 8 C -0.19 -4.79 6.46 24.10 0.16 -4.63 16 9 C -0.05 -1.01 10.12 21.67 0.22 -0.80 16 10 C -0.15 -1.73 10.15 21.12 0.21 -1.51 16 11 C -0.17 -1.80 11.21 66.79 0.75 -1.05 16 12 S 0.16 2.92 23.31 -56.49 -1.32 1.61 16 13 O -0.23 -8.16 10.90 -11.00 -0.12 -8.28 16 14 N -0.51 -19.89 5.02 -864.76 -4.34 -24.23 16 15 C 0.06 1.99 5.47 86.78 0.47 2.47 16 16 C -0.12 -5.59 5.66 31.98 0.18 -5.41 16 17 C 0.22 11.41 0.86 -10.36 -0.01 11.40 16 18 O -0.60 -31.43 13.09 -148.98 -1.95 -33.38 16 19 C -0.56 -31.38 8.21 25.60 0.21 -31.17 16 20 H 0.05 2.66 7.53 -2.91 -0.02 2.63 16 21 C 0.03 1.84 5.28 84.66 0.45 2.29 16 22 N -0.91 -48.21 10.69 21.45 0.23 -47.98 16 23 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.07 3.43 5.65 86.64 0.49 3.92 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.10 1.98 7.18 -2.39 -0.02 1.97 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 34 H 0.06 1.88 7.52 -2.39 -0.02 1.86 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.05 2.53 8.04 -2.39 -0.02 2.51 16 37 H 0.07 3.08 7.76 -2.39 -0.02 3.07 16 38 H 0.38 20.33 6.99 -74.05 -0.52 19.81 16 39 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 40 H 0.06 3.14 7.63 -2.39 -0.02 3.12 16 41 H 0.02 1.22 7.02 -2.39 -0.02 1.21 16 Total: -1.00 -67.16 357.45 -3.85 -71.00 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.56 Total: 28.09 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.12 Total: -5.65 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -8.16 Total: -98.42 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -2.07 Total: -41.65 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.32 Total: 1.61 kcal Total: -67.16 -3.85 -71.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.980 kcal (2) G-P(sol) polarization free energy of solvation -67.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds