Wall clock time and date at job start Tue Mar 31 2020 19:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 N 1.46502 * 109.47251 * 240.00113 * 2 1 3 5 5 S 1.65595 * 120.00014 * 94.99959 * 4 2 1 6 6 O 1.42093 * 106.40155 * 178.54255 * 5 4 2 7 7 O 1.42106 * 106.40058 * 311.45737 * 5 4 2 8 8 C 1.76198 * 107.22074 * 64.99743 * 5 4 2 9 9 C 1.38659 * 119.87823 * 269.73014 * 8 5 4 10 10 C 1.38607 * 120.50086 * 179.72271 * 9 8 5 11 11 C 1.37642 * 120.24916 * 0.54567 * 10 9 8 12 12 C 1.40704 * 119.74176 * 359.73347 * 11 10 9 13 13 C 1.41393 * 120.23900 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99548 * 204.36607 * 13 12 11 15 15 C 1.39942 * 120.00333 * 24.36913 * 13 12 11 16 16 N 1.30820 * 120.00246 * 17.87915 * 15 13 12 17 17 Si 1.86797 * 120.00052 * 197.87883 * 15 13 12 18 18 H 1.48508 * 109.47106 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47336 * 119.99926 * 17 15 13 20 20 H 1.48505 * 109.47438 * 240.00108 * 17 15 13 21 21 C 1.37592 * 119.87253 * 90.00073 * 8 5 4 22 22 C 1.50699 * 109.47311 * 120.00054 * 2 1 3 23 23 N 1.30499 * 125.65403 * 75.17306 * 22 2 1 24 24 C 1.34130 * 109.26031 * 180.29343 * 23 22 2 25 25 C 1.34669 * 108.01726 * 359.73098 * 24 23 22 26 26 N 1.35042 * 125.65008 * 255.00629 * 22 2 1 27 27 C 1.46507 * 126.39787 * 359.97133 * 26 22 2 28 28 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47442 * 299.99551 * 1 2 3 30 30 H 1.08996 * 109.47488 * 60.00488 * 1 2 3 31 31 H 0.96996 * 119.99758 * 274.99892 * 4 2 1 32 32 H 1.08003 * 119.74384 * 359.97438 * 9 8 5 33 33 H 1.08003 * 119.87680 * 180.25619 * 10 9 8 34 34 H 1.07996 * 120.12784 * 179.74704 * 11 10 9 35 35 H 0.97001 * 120.00523 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.12920 * 359.97438 * 21 8 5 37 37 H 1.07994 * 125.99096 * 179.72921 * 24 23 22 38 38 H 1.07999 * 126.59203 * 179.97438 * 25 24 23 39 39 H 1.09008 * 109.46849 * 269.71666 * 27 26 22 40 40 H 1.08998 * 109.47117 * 149.71932 * 27 26 22 41 41 H 1.09003 * 109.46727 * 29.71589 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5504 6 8 2.8776 -0.7634 -3.5084 7 8 1.3246 1.0593 -2.7921 8 6 3.7927 1.1911 -2.1371 9 6 3.5869 2.4674 -1.6358 10 6 4.6634 3.2738 -1.3011 11 6 5.9508 2.8187 -1.4739 12 6 6.1717 1.5275 -1.9873 13 6 7.4899 1.0491 -2.1686 14 1 7.6876 0.2723 -2.8924 15 6 8.5382 1.5821 -1.4101 16 7 8.2800 2.2481 -0.3142 17 14 10.3065 1.3427 -1.9627 18 1 10.3292 0.5593 -3.2241 19 1 10.9376 2.6675 -2.1907 20 1 11.0586 0.6104 -0.9122 21 6 5.0710 0.7154 -2.3183 22 6 2.0324 -0.7104 1.2304 23 7 2.0301 -2.0019 1.4173 24 6 2.5445 -2.2751 2.6256 25 6 2.8837 -1.1088 3.2072 26 7 2.5624 -0.1161 2.3211 27 6 2.7524 1.3227 2.5212 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 2.1110 -1.6561 -1.1949 32 1 2.5800 2.8343 -1.5014 33 1 4.4914 4.2648 -0.9075 34 1 6.7882 3.4503 -1.2163 35 1 9.0066 2.6173 0.2118 36 1 5.2292 -0.2775 -2.7126 37 1 2.6655 -3.2579 3.0564 38 1 3.3241 -0.9811 4.1850 39 1 3.7375 1.6134 2.1561 40 1 2.6755 1.5551 3.5834 41 1 1.9856 1.8701 1.9730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595383964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:38 Heat of formation + Delta-G solvation = -17.062642 kcal Electronic energy + Delta-G solvation = -27127.587155 eV Core-core repulsion = 23327.313306 eV Total energy + Delta-G solvation = -3800.273849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05245 -39.47347 -38.36670 -37.26951 -36.92313 -35.69522 -34.92502 -31.93467 -31.61267 -31.43471 -29.54115 -27.82854 -27.37807 -24.58530 -23.69230 -22.82491 -22.35661 -20.87076 -20.62444 -19.63778 -18.80120 -17.96383 -17.75040 -17.14077 -16.84969 -16.66510 -16.52137 -16.00026 -15.51391 -15.25193 -15.10033 -14.63418 -14.44004 -14.32005 -14.22008 -13.81747 -13.74858 -13.46707 -13.38673 -13.31343 -13.20622 -13.10156 -13.05768 -12.83153 -12.72545 -12.61036 -12.27755 -12.22565 -11.58686 -11.43502 -11.16980 -10.98728 -10.68319 -10.54588 -9.87010 -9.57771 -9.34553 -8.76716 -6.47674 -0.56130 0.37766 0.82233 1.06176 1.35171 1.41768 1.49381 1.82624 2.06556 2.15619 2.26878 2.53017 2.72494 3.26343 3.41816 3.51653 3.68463 3.95361 4.07275 4.17506 4.28070 4.37511 4.39808 4.43634 4.57342 4.70021 4.75788 4.83371 4.87197 4.89167 5.01980 5.08293 5.18217 5.25841 5.38298 5.38866 5.54591 5.85593 5.86480 5.91923 5.96253 6.10072 6.20150 6.50736 6.76924 6.82779 7.12940 8.21255 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.004583 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.736951 B = 6107.790287 C = 7296.955832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.103 0.897 4 N -1.098 6.098 5 S 2.716 3.284 6 O -0.997 6.997 7 O -0.971 6.971 8 C -0.639 4.639 9 C -0.146 4.146 10 C -0.116 4.116 11 C -0.138 4.138 12 C 0.063 3.937 13 C -0.500 4.500 14 H 0.072 0.928 15 C 0.041 3.959 16 N -0.818 5.818 17 Si 0.979 3.021 18 H -0.263 1.263 19 H -0.259 1.259 20 H -0.264 1.264 21 C -0.147 4.147 22 C 0.181 3.819 23 N -0.510 5.510 24 C -0.056 4.056 25 C -0.047 4.047 26 N -0.453 5.453 27 C 0.056 3.944 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.426 0.574 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.292 0.708 36 H 0.100 0.900 37 H 0.187 0.813 38 H 0.208 0.792 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 0.449 10.180 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.130 3.870 3 H 0.121 0.879 4 N -0.858 5.858 5 S 2.809 3.191 6 O -0.987 6.987 7 O -0.961 6.961 8 C -0.729 4.729 9 C -0.166 4.166 10 C -0.135 4.135 11 C -0.158 4.158 12 C 0.060 3.940 13 C -0.529 4.529 14 H 0.091 0.909 15 C -0.174 4.174 16 N -0.444 5.444 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.189 1.189 21 C -0.169 4.169 22 C -0.083 4.083 23 N -0.229 5.229 24 C -0.204 4.204 25 C -0.181 4.181 26 N -0.135 5.135 27 C -0.085 4.085 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.204 0.796 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.108 0.302 9.033 13.559 hybrid contribution 2.165 0.091 0.801 2.311 sum -7.942 0.393 9.835 12.647 Atomic orbital electron populations 1.22274 0.91325 1.03986 1.04228 1.19055 0.95835 0.93965 0.78163 0.87894 1.55395 1.81707 1.19978 1.28734 1.00960 0.73313 0.72630 0.72208 1.93505 1.82700 1.63159 1.59340 1.93510 1.52148 1.66526 1.83925 1.30203 1.14330 1.10915 1.17405 1.20529 0.99250 0.92938 1.03924 1.21155 0.92391 0.99711 1.00280 1.21649 0.96668 0.95334 1.02139 1.18024 0.93145 0.92007 0.90812 1.19858 0.92537 1.20238 1.20272 0.90937 1.26650 1.05576 0.92350 0.92872 1.69786 1.36776 1.27177 1.10629 0.85201 0.75910 0.79491 0.79452 1.18706 1.18337 1.18880 1.20803 0.91819 0.98709 1.05528 1.23204 1.03787 0.89414 0.91864 1.70017 1.21446 1.12675 1.18807 1.22737 1.05643 0.99679 0.92307 1.23301 1.08108 0.87618 0.99064 1.45472 1.44807 1.09168 1.14042 1.22431 1.04048 0.75821 1.06228 0.91299 0.89412 0.90086 0.73742 0.84182 0.84852 0.86812 0.89693 0.88179 0.79577 0.77530 0.91201 0.86254 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.50 71.98 0.68 -2.82 16 2 C 0.24 6.45 3.04 44.25 0.13 6.59 16 3 H 0.10 2.59 6.17 -2.39 -0.01 2.58 16 4 N -1.10 -34.29 5.46 -172.52 -0.94 -35.23 16 5 S 2.72 100.75 5.65 -56.49 -0.32 100.43 16 6 O -1.00 -43.29 17.26 -128.00 -2.21 -45.50 16 7 O -0.97 -35.99 16.52 -128.00 -2.11 -38.11 16 8 C -0.64 -27.12 5.81 22.22 0.13 -27.00 16 9 C -0.15 -5.65 8.92 22.46 0.20 -5.45 16 10 C -0.12 -4.72 10.02 22.22 0.22 -4.50 16 11 C -0.14 -6.69 8.70 22.73 0.20 -6.49 16 12 C 0.06 3.33 5.58 -21.29 -0.12 3.21 16 13 C -0.50 -26.59 9.05 23.46 0.21 -26.38 16 14 H 0.07 3.84 7.91 -2.91 -0.02 3.81 16 15 C 0.04 2.00 5.14 85.26 0.44 2.44 16 16 N -0.82 -39.87 10.95 21.83 0.24 -39.63 16 17 Si 0.98 37.03 29.59 68.60 2.03 39.06 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 C -0.15 -7.30 9.26 22.73 0.21 -7.09 16 22 C 0.18 5.16 6.74 138.13 0.93 6.09 16 23 N -0.51 -15.70 10.97 -188.14 -2.06 -17.76 16 24 C -0.06 -1.43 11.87 83.52 0.99 -0.44 16 25 C -0.05 -1.04 11.58 83.09 0.96 -0.07 16 26 N -0.45 -10.91 3.15 -537.58 -1.69 -12.61 16 27 C 0.06 0.98 10.76 127.77 1.37 2.35 16 28 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.82 7.64 -2.39 -0.02 1.80 16 31 H 0.43 13.04 8.60 -96.75 -0.83 12.21 16 32 H 0.14 4.45 7.59 -2.91 -0.02 4.43 16 33 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 35 H 0.29 12.69 8.30 -92.71 -0.77 11.93 16 36 H 0.10 5.01 7.60 -2.91 -0.02 4.99 16 37 H 0.19 3.77 8.06 -2.91 -0.02 3.74 16 38 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.46 7.31 -2.39 -0.02 1.44 16 Total: -1.00 -69.78 360.86 -0.27 -70.05 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.24 Total: 38.86 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 6.57 Total: -59.56 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.46 Total: -105.23 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -4.32 Total: -83.61 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Atomic # 16 Polarization: 100.75 SS G_CDS: -0.32 Total: 100.43 kcal Total: -69.78 -0.27 -70.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595383964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.983 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds