Wall clock time and date at job start Tue Mar 31 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30505 * 125.65039 * 2 1 4 4 C 1.34132 * 109.25620 * 179.97438 * 3 2 1 5 5 C 1.34675 * 108.02071 * 359.97438 * 4 3 2 6 6 S 1.76195 * 126.58899 * 179.97438 * 5 4 3 7 7 O 1.42105 * 106.39931 * 83.57535 * 6 5 4 8 8 O 1.42103 * 106.40002 * 216.48740 * 6 5 4 9 9 N 1.65597 * 107.22325 * 330.03028 * 6 5 4 10 10 C 1.46500 * 119.99880 * 85.40983 * 9 6 5 11 11 C 1.50702 * 109.46925 * 95.00466 * 10 9 6 12 12 H 1.08004 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00231 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00531 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47302 * 90.00030 * 15 13 11 17 17 H 1.48497 * 109.47585 * 210.00386 * 15 13 11 18 18 H 1.48506 * 109.47036 * 330.00297 * 15 13 11 19 19 C 1.39667 * 119.99880 * 265.41743 * 9 6 5 20 20 C 1.38906 * 120.07872 * 58.00492 * 19 9 6 21 21 C 1.38109 * 119.92538 * 179.76841 * 20 19 9 22 22 C 1.38282 * 120.07656 * 0.50884 * 21 20 19 23 23 C 1.38285 * 120.14566 * 359.74454 * 22 21 20 24 24 C 1.38099 * 120.07846 * 0.02562 * 23 22 21 25 25 N 1.35044 * 125.64983 * 179.97438 * 2 1 3 26 26 C 1.46494 * 126.39765 * 0.05818 * 25 2 1 27 27 H 1.08995 * 109.47155 * 90.02150 * 1 2 3 28 28 H 1.08997 * 109.46973 * 210.02551 * 1 2 3 29 29 H 1.09005 * 109.46938 * 330.02235 * 1 2 3 30 30 H 1.07996 * 125.98775 * 179.74059 * 4 3 2 31 31 H 1.08998 * 109.46973 * 215.00076 * 10 9 6 32 32 H 1.09005 * 109.47312 * 335.00457 * 10 9 6 33 33 H 0.96992 * 120.00551 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.03987 * 0.02562 * 20 19 9 35 35 H 1.08002 * 119.96146 * 180.26073 * 21 20 19 36 36 H 1.07995 * 119.92991 * 179.72541 * 22 21 20 37 37 H 1.08001 * 119.96230 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.03918 * 179.97438 * 24 23 22 39 39 H 1.08996 * 109.47454 * 89.97749 * 26 25 2 40 40 H 1.09001 * 109.47178 * 209.98007 * 26 25 2 41 41 H 1.08998 * 109.46973 * 329.97773 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5544 0.6819 0.0006 5 6 3.5926 -0.6643 0.0015 6 16 5.0366 -1.6740 0.0019 7 8 5.4531 -1.7779 1.3566 8 8 4.7372 -2.8027 -0.8079 9 7 6.2234 -0.8326 -0.7891 10 6 7.0461 0.1350 -0.0589 11 6 8.3201 -0.5300 0.3948 12 1 8.4988 -1.5696 0.1628 13 6 9.2570 0.1883 1.1069 14 7 10.3690 -0.3919 1.5024 15 14 8.9476 1.9861 1.5089 16 1 8.2432 2.0878 2.8122 17 1 10.2441 2.7056 1.5895 18 1 8.1093 2.5941 0.4445 19 6 6.4400 -1.0453 -2.1523 20 6 5.4085 -0.8447 -3.0607 21 6 5.6275 -1.0514 -4.4086 22 6 6.8690 -1.4677 -4.8532 23 6 7.8966 -1.6734 -3.9509 24 6 7.6858 -1.4641 -2.6023 25 7 2.2940 -1.0974 0.0005 26 6 1.8425 -2.4910 -0.0001 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.4098 1.3411 -0.0033 31 1 7.2868 0.9736 -0.7123 32 1 6.4961 0.4973 0.8097 33 1 11.0279 0.1133 2.0038 34 1 4.4375 -0.5235 -2.7139 35 1 4.8271 -0.8915 -5.1159 36 1 7.0363 -1.6328 -5.9072 37 1 8.8649 -1.9990 -4.3014 38 1 8.4887 -1.6253 -1.8982 39 1 1.7310 -2.8364 -1.0278 40 1 2.5769 -3.1111 0.5140 41 1 0.8836 -2.5624 0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600646391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:34 Heat of formation + Delta-G solvation = 29.875820 kcal Electronic energy + Delta-G solvation = -27611.954460 eV Core-core repulsion = 23813.716015 eV Total energy + Delta-G solvation = -3798.238445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24512 -39.09805 -36.88548 -35.63276 -35.53143 -34.22812 -32.57087 -32.12814 -30.58101 -29.62667 -27.81693 -27.26122 -26.89291 -22.62553 -22.37981 -22.14538 -21.58147 -20.31346 -18.84485 -17.88275 -17.34039 -16.89794 -16.50293 -16.03513 -15.86036 -15.59927 -14.74105 -14.64165 -14.24020 -14.09253 -13.61659 -13.57947 -13.50545 -13.14728 -13.04072 -12.76944 -12.75441 -12.61490 -12.51334 -12.14777 -11.94491 -11.73811 -11.56374 -11.42243 -11.29825 -11.09037 -10.93242 -10.57795 -10.28360 -10.15905 -9.84699 -9.58209 -9.05406 -8.82236 -8.66189 -8.56785 -7.89391 -6.15896 -4.16997 0.56131 1.44182 1.67851 1.79157 2.48187 2.84468 3.20062 3.26691 3.30085 3.34411 3.91715 4.13120 4.14772 4.32562 4.45722 4.64808 4.81529 4.94060 5.10032 5.12529 5.19072 5.19732 5.22519 5.26439 5.29674 5.39532 5.53600 5.68242 5.75353 5.91887 5.96091 6.18118 6.39617 6.41158 6.52534 6.68668 6.76165 6.88717 6.89447 7.04717 7.10826 7.43019 7.56768 7.74576 8.37165 8.85504 9.41516 10.96582 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.005799 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.875609 B = 4826.890284 C = 6269.120902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.238 3.762 3 N -0.495 5.495 4 C 0.093 3.907 5 C -0.598 4.598 6 S 2.708 3.292 7 O -0.921 6.921 8 O -0.957 6.957 9 N -0.923 5.923 10 C 0.218 3.782 11 C -0.535 4.535 12 H 0.084 0.916 13 C 0.080 3.920 14 N -0.889 5.889 15 Si 0.865 3.135 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.172 3.828 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.110 4.110 24 C -0.102 4.102 25 N -0.406 5.406 26 C 0.057 3.943 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.183 0.817 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 -1.440 -8.534 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 N -0.215 5.215 4 C -0.061 4.061 5 C -0.791 4.791 6 S 2.793 3.207 7 O -0.910 6.910 8 O -0.947 6.947 9 N -0.755 5.755 10 C 0.097 3.903 11 C -0.574 4.574 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.526 5.526 15 Si 0.691 3.309 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.187 1.187 19 C 0.077 3.923 20 C -0.162 4.162 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.123 4.123 25 N -0.087 5.087 26 C -0.085 4.085 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.200 0.800 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.168 0.832 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.148 -1.564 -7.955 18.968 hybrid contribution -0.047 0.860 0.271 0.903 sum -17.195 -0.704 -7.684 18.847 Atomic orbital electron populations 1.20301 0.84213 1.04477 1.04022 1.23837 0.96069 0.81535 1.01143 1.70310 1.01897 1.28014 1.21241 1.22351 0.95505 0.90881 0.97401 1.34184 1.05283 1.11650 1.27975 1.01986 0.72012 0.72712 0.74037 1.93678 1.79920 1.84104 1.33327 1.93548 1.84943 1.46271 1.69893 1.55087 1.47188 1.57643 1.15589 1.19804 0.91505 0.87891 0.91108 1.21237 1.00445 0.99789 1.35939 0.89830 1.24796 0.94793 0.98086 0.94721 1.69866 1.08552 1.36825 1.37357 0.87027 0.78436 0.85570 0.79894 1.19584 1.20712 1.18665 1.17309 0.94763 0.98085 0.82131 1.21124 0.98713 1.02754 0.93601 1.20782 0.97198 1.00299 0.94545 1.21067 0.93455 1.01494 0.99317 1.21093 0.98967 0.99902 0.92886 1.21712 0.97727 0.96563 0.96332 1.44840 1.03904 1.07941 1.52004 1.22368 1.02382 0.78545 1.05244 0.89496 0.90383 0.88670 0.79959 0.93716 0.94538 0.92314 0.86864 0.86347 0.86444 0.85860 0.83205 0.88722 0.89260 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.19 36.00 0.37 -0.19 16 2 C 0.24 3.19 7.90 -155.41 -1.23 1.96 16 3 N -0.50 -8.03 11.25 -10.81 -0.12 -8.16 16 4 C 0.09 1.59 11.76 -17.81 -0.21 1.38 16 5 C -0.60 -10.28 6.68 -16.56 -0.11 -10.39 16 6 S 2.71 53.95 5.09 -107.50 -0.55 53.41 16 7 O -0.92 -21.60 17.16 -57.17 -0.98 -22.58 16 8 O -0.96 -19.03 15.70 -57.17 -0.90 -19.93 16 9 N -0.92 -18.94 2.81 -59.81 -0.17 -19.11 16 10 C 0.22 4.96 4.02 -5.19 -0.02 4.94 16 11 C -0.54 -14.41 8.73 -34.44 -0.30 -14.71 16 12 H 0.08 2.43 7.23 -52.48 -0.38 2.05 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 15 Si 0.86 20.37 27.47 -169.99 -4.67 15.70 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 19 C 0.17 3.27 4.95 -83.79 -0.41 2.85 16 20 C -0.14 -2.32 9.28 -39.38 -0.37 -2.69 16 21 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 16 22 C -0.13 -1.84 10.04 -39.55 -0.40 -2.23 16 23 C -0.11 -1.68 10.04 -39.61 -0.40 -2.08 16 24 C -0.10 -1.92 9.51 -39.38 -0.37 -2.29 16 25 N -0.41 -5.79 3.15 -120.31 -0.38 -6.17 16 26 C 0.06 0.59 10.22 59.84 0.61 1.20 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.42 7.07 -51.93 -0.37 0.05 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.18 2.88 8.03 -52.49 -0.42 2.46 16 31 H 0.04 0.97 7.15 -51.93 -0.37 0.60 16 32 H 0.04 0.81 7.14 -51.93 -0.37 0.44 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.11 1.76 7.82 -52.49 -0.41 1.35 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.15 3.12 6.18 -52.49 -0.32 2.79 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.01 7.37 -51.93 -0.38 0.63 16 41 H 0.10 0.61 7.04 -51.93 -0.37 0.24 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -35.09 358.12 -10.03 -45.12 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.10 Total: 3.84 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.34 Total: -22.09 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.10 Total: -58.86 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.88 Total: -42.51 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.55 Total: 53.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.09 -10.03 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600646391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.991 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds