Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30505 * 125.65039 * 2 1 4 4 C 1.34132 * 109.25620 * 179.97438 * 3 2 1 5 5 C 1.34675 * 108.02071 * 359.97438 * 4 3 2 6 6 S 1.76195 * 126.58899 * 179.97438 * 5 4 3 7 7 O 1.42105 * 106.39931 * 83.57535 * 6 5 4 8 8 O 1.42103 * 106.40002 * 216.48740 * 6 5 4 9 9 N 1.65597 * 107.22325 * 330.03028 * 6 5 4 10 10 C 1.46500 * 119.99880 * 85.40983 * 9 6 5 11 11 C 1.50702 * 109.46925 * 95.00466 * 10 9 6 12 12 H 1.08004 * 119.99956 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00231 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00531 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00075 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47302 * 90.00030 * 15 13 11 17 17 H 1.48497 * 109.47585 * 210.00386 * 15 13 11 18 18 H 1.48506 * 109.47036 * 330.00297 * 15 13 11 19 19 C 1.39667 * 119.99880 * 265.41743 * 9 6 5 20 20 C 1.38906 * 120.07872 * 58.00492 * 19 9 6 21 21 C 1.38109 * 119.92538 * 179.76841 * 20 19 9 22 22 C 1.38282 * 120.07656 * 0.50884 * 21 20 19 23 23 C 1.38285 * 120.14566 * 359.74454 * 22 21 20 24 24 C 1.38099 * 120.07846 * 0.02562 * 23 22 21 25 25 N 1.35044 * 125.64983 * 179.97438 * 2 1 3 26 26 C 1.46494 * 126.39765 * 0.05818 * 25 2 1 27 27 H 1.08995 * 109.47155 * 90.02150 * 1 2 3 28 28 H 1.08997 * 109.46973 * 210.02551 * 1 2 3 29 29 H 1.09005 * 109.46938 * 330.02235 * 1 2 3 30 30 H 1.07996 * 125.98775 * 179.74059 * 4 3 2 31 31 H 1.08998 * 109.46973 * 215.00076 * 10 9 6 32 32 H 1.09005 * 109.47312 * 335.00457 * 10 9 6 33 33 H 0.96992 * 120.00551 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.03987 * 0.02562 * 20 19 9 35 35 H 1.08002 * 119.96146 * 180.26073 * 21 20 19 36 36 H 1.07995 * 119.92991 * 179.72541 * 22 21 20 37 37 H 1.08001 * 119.96230 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.03918 * 179.97438 * 24 23 22 39 39 H 1.08996 * 109.47454 * 89.97749 * 26 25 2 40 40 H 1.09001 * 109.47178 * 209.98007 * 26 25 2 41 41 H 1.08998 * 109.46973 * 329.97773 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5544 0.6819 0.0006 5 6 3.5926 -0.6643 0.0015 6 16 5.0366 -1.6740 0.0019 7 8 5.4531 -1.7779 1.3566 8 8 4.7372 -2.8027 -0.8079 9 7 6.2234 -0.8326 -0.7891 10 6 7.0461 0.1350 -0.0589 11 6 8.3201 -0.5300 0.3948 12 1 8.4988 -1.5696 0.1628 13 6 9.2570 0.1883 1.1069 14 7 10.3690 -0.3919 1.5024 15 14 8.9476 1.9861 1.5089 16 1 8.2432 2.0878 2.8122 17 1 10.2441 2.7056 1.5895 18 1 8.1093 2.5941 0.4445 19 6 6.4400 -1.0453 -2.1523 20 6 5.4085 -0.8447 -3.0607 21 6 5.6275 -1.0514 -4.4086 22 6 6.8690 -1.4677 -4.8532 23 6 7.8966 -1.6734 -3.9509 24 6 7.6858 -1.4641 -2.6023 25 7 2.2940 -1.0974 0.0005 26 6 1.8425 -2.4910 -0.0001 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.4098 1.3411 -0.0033 31 1 7.2868 0.9736 -0.7123 32 1 6.4961 0.4973 0.8097 33 1 11.0279 0.1133 2.0038 34 1 4.4375 -0.5235 -2.7139 35 1 4.8271 -0.8915 -5.1159 36 1 7.0363 -1.6328 -5.9072 37 1 8.8649 -1.9990 -4.3014 38 1 8.4887 -1.6253 -1.8982 39 1 1.7310 -2.8364 -1.0278 40 1 2.5769 -3.1111 0.5140 41 1 0.8836 -2.5624 0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600646391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = 5.361479 kcal Electronic energy + Delta-G solvation = -27613.017482 eV Core-core repulsion = 23813.716015 eV Total energy + Delta-G solvation = -3799.301466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36198 -40.42544 -38.52331 -37.18711 -37.13770 -35.29550 -34.60779 -33.04063 -31.86415 -31.15987 -29.07043 -28.68918 -27.82391 -24.45582 -23.65534 -23.39730 -23.01837 -21.34842 -20.25416 -19.26997 -19.09569 -18.55506 -17.95387 -17.21560 -17.04960 -16.96944 -16.37594 -16.11360 -15.69602 -15.32733 -14.95369 -14.62717 -14.51080 -14.32695 -14.23950 -14.22112 -14.00294 -13.81376 -13.60970 -13.55032 -13.38489 -13.25656 -13.17443 -12.92352 -12.79359 -12.63359 -12.40746 -12.22156 -11.90004 -11.57240 -11.37393 -10.93871 -10.79841 -10.64607 -10.00120 -9.82590 -9.29105 -8.30179 -6.35963 -0.96874 0.25589 0.41323 0.52772 1.35521 1.38293 1.42156 1.46306 1.69499 1.79309 2.32937 2.45807 2.85937 3.02278 3.26634 3.34075 3.63707 3.71490 3.86473 4.05069 4.13702 4.15127 4.20057 4.37310 4.44793 4.52419 4.57390 4.60635 4.67101 4.68500 4.86484 4.88077 4.98743 4.99794 5.18223 5.20715 5.38846 5.47044 5.62956 5.67263 5.77287 5.91828 6.19247 6.27260 6.61669 6.65275 7.25612 8.86173 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.005799 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.875609 B = 4826.890284 C = 6269.120902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.253 3.747 3 N -0.523 5.523 4 C 0.088 3.912 5 C -0.615 4.615 6 S 2.720 3.280 7 O -0.972 6.972 8 O -0.966 6.966 9 N -0.928 5.928 10 C 0.226 3.774 11 C -0.537 4.537 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.940 5.940 15 Si 0.927 3.073 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.231 1.231 19 C 0.140 3.860 20 C -0.146 4.146 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.135 4.135 25 N -0.410 5.410 26 C 0.041 3.959 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.185 0.815 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.121 0.879 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 -0.089 -11.048 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 N -0.243 5.243 4 C -0.068 4.068 5 C -0.813 4.813 6 S 2.810 3.190 7 O -0.962 6.962 8 O -0.956 6.956 9 N -0.759 5.759 10 C 0.103 3.897 11 C -0.576 4.576 12 H 0.059 0.941 13 C -0.180 4.180 14 N -0.579 5.579 15 Si 0.749 3.251 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.154 1.154 19 C 0.047 3.953 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.156 4.156 25 N -0.090 5.090 26 C -0.099 4.099 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.202 0.798 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.871 -0.269 -10.498 23.364 hybrid contribution 0.994 0.314 0.926 1.395 sum -19.877 0.044 -9.572 22.061 Atomic orbital electron populations 1.20653 0.79926 1.06426 1.06079 1.24920 0.98067 0.80422 0.97685 1.70343 1.01553 1.29495 1.22891 1.22522 0.96390 0.90860 0.96989 1.33347 1.05709 1.11151 1.31092 1.01088 0.72417 0.72705 0.72801 1.93613 1.81377 1.85226 1.35965 1.93510 1.85198 1.47262 1.69587 1.54867 1.47404 1.57257 1.16397 1.19567 0.89965 0.88365 0.91778 1.21468 1.02445 0.98230 1.35412 0.94142 1.25729 0.94386 1.03262 0.94627 1.70024 1.09926 1.39012 1.38980 0.86025 0.79008 0.79607 0.80495 1.19308 1.20146 1.15377 1.17592 0.95809 1.00251 0.81699 1.21297 0.98186 1.02807 0.94388 1.21296 0.98498 0.98219 0.93960 1.21538 0.92319 0.99026 1.00977 1.21367 1.00782 0.99183 0.91584 1.21595 0.97147 0.99311 0.97594 1.45117 1.02687 1.09628 1.51581 1.22789 1.03984 0.76366 1.06794 0.87160 0.87269 0.87892 0.79834 0.92254 0.93922 0.92217 0.86123 0.82358 0.82126 0.83879 0.87076 0.87181 0.91046 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.19 71.23 0.73 -0.07 16 2 C 0.25 6.05 7.90 138.13 1.09 7.14 16 3 N -0.52 -16.03 11.25 -188.13 -2.12 -18.15 16 4 C 0.09 2.96 11.76 83.52 0.98 3.95 16 5 C -0.61 -21.02 6.68 83.09 0.56 -20.47 16 6 S 2.72 113.03 5.09 -56.49 -0.29 112.74 16 7 O -0.97 -48.53 17.16 -128.00 -2.20 -50.73 16 8 O -0.97 -39.70 15.70 -128.00 -2.01 -41.71 16 9 N -0.93 -39.81 2.81 -343.13 -0.96 -40.77 16 10 C 0.23 10.66 4.02 85.63 0.34 11.00 16 11 C -0.54 -30.81 8.73 25.60 0.22 -30.59 16 12 H 0.04 2.60 7.23 -2.91 -0.02 2.58 16 13 C 0.02 1.10 5.47 84.65 0.46 1.56 16 14 N -0.94 -58.58 13.96 21.44 0.30 -58.28 16 15 Si 0.93 42.67 27.47 68.60 1.88 44.56 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.23 -9.39 6.54 99.48 0.65 -8.74 16 19 C 0.14 5.48 4.95 38.22 0.19 5.67 16 20 C -0.15 -4.63 9.28 22.40 0.21 -4.42 16 21 C -0.10 -2.51 10.04 22.25 0.22 -2.29 16 22 C -0.12 -2.86 10.04 22.29 0.22 -2.64 16 23 C -0.11 -3.31 10.04 22.25 0.22 -3.09 16 24 C -0.14 -5.33 9.51 22.40 0.21 -5.12 16 25 N -0.41 -10.90 3.15 -534.55 -1.68 -12.58 16 26 C 0.04 0.75 10.22 127.77 1.31 2.06 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.54 7.07 -2.39 -0.02 0.52 16 29 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.18 5.82 8.03 -2.91 -0.02 5.80 16 31 H 0.06 2.61 7.15 -2.39 -0.02 2.59 16 32 H 0.04 1.96 7.14 -2.38 -0.02 1.94 16 33 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.12 3.59 7.82 -2.91 -0.02 3.56 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.11 5.16 6.18 -2.91 -0.02 5.15 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.58 7.37 -2.39 -0.02 1.56 16 41 H 0.14 1.18 7.04 -2.39 -0.02 1.17 16 Total: -1.00 -83.23 358.12 0.89 -82.34 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.99 Total: 19.88 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 6.97 Total: -37.30 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -4.47 Total: -129.78 kcal Atomic # 8 Polarization: -88.23 SS G_CDS: -4.21 Total: -92.44 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: 113.03 SS G_CDS: -0.29 Total: 112.74 kcal Total: -83.23 0.89 -82.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600646391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.700 kcal (2) G-P(sol) polarization free energy of solvation -83.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds