Wall clock time and date at job start Tue Mar 31 2020 19:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 N 1.46499 * 109.47082 * 119.99545 * 2 1 3 5 5 S 1.65600 * 120.00146 * 263.79358 * 4 2 1 6 6 O 1.42101 * 106.40112 * 311.69582 * 5 4 2 7 7 O 1.42101 * 106.40405 * 178.77302 * 5 4 2 8 8 C 1.76205 * 107.21782 * 65.23087 * 5 4 2 9 9 C 1.37640 * 120.13157 * 244.28459 * 8 5 4 10 10 C 1.38611 * 120.24483 * 180.32133 * 9 8 5 11 11 C 1.38655 * 120.50526 * 359.67311 * 10 9 8 12 12 C 1.37595 * 120.24586 * 359.97438 * 11 10 9 13 13 C 1.40701 * 120.12201 * 63.97969 * 8 5 4 14 14 C 1.41390 * 120.24819 * 359.97438 * 13 8 5 15 15 H 1.08005 * 119.99646 * 335.62877 * 14 13 8 16 16 C 1.39945 * 120.00246 * 155.63168 * 14 13 8 17 17 N 1.30822 * 119.99781 * 331.91214 * 16 14 13 18 18 Si 1.86799 * 119.99969 * 151.90712 * 16 14 13 19 19 H 1.48492 * 109.47337 * 269.99982 * 18 16 14 20 20 H 1.48497 * 109.47424 * 30.00336 * 18 16 14 21 21 H 1.48500 * 109.46884 * 150.00062 * 18 16 14 22 22 C 1.50698 * 109.47284 * 239.99645 * 2 1 3 23 23 C 1.39868 * 126.03885 * 279.69175 * 22 2 1 24 24 N 1.30844 * 108.19927 * 179.82049 * 23 22 2 25 25 N 1.40080 * 108.20376 * 0.43614 * 24 23 22 26 26 C 1.46511 * 126.03338 * 179.74435 * 25 24 23 27 27 C 1.34945 * 107.92906 * 359.72026 * 25 24 23 28 28 H 1.08999 * 109.47878 * 300.00340 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00120 * 83.79245 * 4 2 1 32 32 H 1.07997 * 119.87236 * 0.02562 * 9 8 5 33 33 H 1.08000 * 119.74253 * 179.69673 * 10 9 8 34 34 H 1.07995 * 119.87549 * 180.02562 * 11 10 9 35 35 H 1.08004 * 120.12835 * 180.02562 * 12 11 10 36 36 H 0.96998 * 120.00051 * 355.67674 * 17 16 14 37 37 H 1.07994 * 125.90057 * 359.97438 * 23 22 2 38 38 H 1.09000 * 109.46614 * 269.97595 * 26 25 24 39 39 H 1.08991 * 109.47349 * 29.97542 * 26 25 24 40 40 H 1.09003 * 109.46896 * 149.97857 * 26 25 24 41 41 H 1.08001 * 126.12674 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4404 0.1798 2.5403 6 8 3.2812 1.2327 2.0889 7 8 2.8393 -0.7667 3.5223 8 6 0.9734 0.9416 3.1505 9 6 0.8589 2.3132 3.1581 10 6 -0.2914 2.9151 3.6437 11 6 -1.3413 2.1450 4.1204 12 6 -1.2516 0.7720 4.1156 13 6 -0.0882 0.1498 3.6258 14 6 0.0153 -1.2603 3.6163 15 1 0.6831 -1.7480 2.9216 16 6 -0.7476 -2.0239 4.5070 17 7 -1.1100 -1.5182 5.6578 18 14 -1.2485 -3.7651 4.0526 19 1 -2.5550 -3.7363 3.3473 20 1 -0.2190 -4.3604 3.1633 21 1 -1.3699 -4.5831 5.2861 22 6 2.0323 -0.7105 -1.2304 23 6 2.1271 -2.0956 -1.3997 24 7 2.6023 -2.3295 -2.5962 25 7 2.8346 -1.0985 -3.2231 26 6 3.3708 -0.9064 -4.5729 27 6 2.4768 -0.1209 -2.3644 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 2.0943 -1.6575 1.2010 32 1 1.6704 2.9228 2.7888 33 1 -0.3705 3.9922 3.6505 34 1 -2.2330 2.6246 4.4960 35 1 -2.0707 0.1740 4.4869 36 1 -0.7979 -0.6382 5.9207 37 1 1.8529 -2.8430 -0.6700 38 1 4.4581 -0.8443 -4.5265 39 1 3.0815 -1.7480 -5.2020 40 1 2.9719 0.0163 -4.9944 41 1 2.5345 0.9416 -2.5493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601356039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:52 Heat of formation + Delta-G solvation = 13.720243 kcal Electronic energy + Delta-G solvation = -27296.551827 eV Core-core repulsion = 23497.612824 eV Total energy + Delta-G solvation = -3798.939003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21417 -37.83271 -36.38097 -35.93759 -34.84575 -34.11248 -32.97934 -30.49543 -30.19275 -29.45873 -28.64573 -26.62465 -25.37110 -22.81439 -21.78797 -21.20747 -21.15331 -20.02311 -18.61326 -18.26448 -17.28288 -16.72703 -16.03067 -15.53536 -15.30326 -14.88863 -14.50076 -14.30381 -14.16593 -13.79181 -13.64653 -13.36637 -13.18311 -12.86140 -12.69957 -12.59959 -12.45818 -12.23927 -11.78825 -11.59610 -11.30898 -11.20968 -11.12556 -11.11621 -11.00597 -10.91321 -10.55872 -10.49838 -10.33614 -9.85961 -9.55717 -9.42182 -9.22418 -8.83795 -8.35062 -8.18464 -7.83753 -7.51755 -4.83352 1.50976 1.88470 2.26284 2.48724 2.67057 2.82829 3.06604 3.17675 3.25134 3.85077 3.95251 4.31608 4.41465 4.73642 4.81923 4.93845 5.02553 5.14875 5.17876 5.30628 5.41641 5.57871 5.67870 5.75318 5.90128 5.95553 5.99912 6.07904 6.29259 6.32545 6.57701 6.61049 6.69566 6.79193 6.91541 6.97210 7.11240 7.30394 7.40056 7.49702 7.62279 7.66885 7.69881 7.81652 7.99089 8.35917 8.57618 9.73623 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.004755 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.959340 B = 5887.450240 C = 6967.051447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.235 3.765 3 H 0.090 0.910 4 N -1.113 6.113 5 S 2.701 3.299 6 O -1.000 7.000 7 O -0.968 6.968 8 C -0.782 4.782 9 C 0.015 3.985 10 C -0.268 4.268 11 C -0.054 4.054 12 C -0.216 4.216 13 C 0.166 3.834 14 C -0.491 4.491 15 H 0.089 0.911 16 C 0.044 3.956 17 N -0.766 5.766 18 Si 1.065 2.935 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.273 1.273 22 C -0.228 4.228 23 C 0.061 3.939 24 N -0.301 5.301 25 N -0.381 5.381 26 C 0.104 3.896 27 C 0.059 3.941 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.410 0.590 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.305 0.695 37 H 0.183 0.817 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 0.878 -14.574 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.126 3.874 3 H 0.108 0.892 4 N -0.869 5.869 5 S 2.799 3.201 6 O -0.990 6.990 7 O -0.958 6.958 8 C -0.877 4.877 9 C -0.005 4.005 10 C -0.289 4.289 11 C -0.073 4.073 12 C -0.235 4.235 13 C 0.161 3.839 14 C -0.518 4.518 15 H 0.107 0.893 16 C -0.182 4.182 17 N -0.387 5.387 18 Si 0.887 3.113 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.198 1.198 22 C -0.241 4.241 23 C -0.125 4.125 24 N -0.122 5.122 25 N -0.164 5.164 26 C -0.037 4.037 27 C -0.087 4.087 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.243 0.757 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.200 0.800 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.432 -1.031 -14.653 14.889 hybrid contribution -0.201 1.930 0.106 1.943 sum 2.231 0.899 -14.547 14.744 Atomic orbital electron populations 1.22307 0.94545 1.03042 1.02483 1.18759 0.93515 0.94607 0.80526 0.89224 1.55720 1.84098 1.18995 1.28064 1.01023 0.74237 0.72773 0.72076 1.93441 1.65912 1.57631 1.82009 1.93541 1.82373 1.62197 1.57707 1.29744 1.20970 1.02951 1.34051 1.20297 0.95694 0.92641 0.91835 1.20404 0.96887 0.97531 1.14061 1.20799 0.96625 0.94213 0.95643 1.21302 0.98727 0.93925 1.09579 1.16913 0.88693 0.92024 0.86291 1.20944 1.21465 0.91507 1.17855 0.89301 1.27155 0.91890 1.07089 0.92071 1.70434 1.31804 1.19394 1.17020 0.83627 0.77739 0.72562 0.77331 1.19646 1.19348 1.19753 1.20237 1.12541 0.93693 0.97598 1.23720 0.98304 0.96090 0.94380 1.77340 1.22644 1.03295 1.08908 1.48426 1.50431 1.03999 1.13504 1.21804 0.99352 1.03449 0.79135 1.22289 1.00105 0.95450 0.90857 0.90607 0.92578 0.91917 0.75668 0.87428 0.88708 0.88810 0.87259 0.88121 0.80002 0.90923 0.89503 0.89604 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.50 37.15 0.35 -2.11 16 2 C 0.23 3.56 3.35 -69.09 -0.23 3.32 16 3 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 4 N -1.11 -19.32 4.55 -5.89 -0.03 -19.34 16 5 S 2.70 58.20 4.92 -107.50 -0.53 57.67 16 6 O -1.00 -22.48 16.30 -57.17 -0.93 -23.41 16 7 O -0.97 -23.99 16.58 -57.17 -0.95 -24.94 16 8 C -0.78 -17.86 4.99 -38.87 -0.19 -18.06 16 9 C 0.02 0.33 9.54 -39.66 -0.38 -0.05 16 10 C -0.27 -5.62 10.05 -39.29 -0.39 -6.01 16 11 C -0.05 -1.15 10.02 -39.66 -0.40 -1.55 16 12 C -0.22 -5.04 8.00 -38.87 -0.31 -5.36 16 13 C 0.17 3.99 4.91 -106.82 -0.52 3.46 16 14 C -0.49 -11.78 7.70 -37.74 -0.29 -12.07 16 15 H 0.09 2.01 5.60 -52.48 -0.29 1.72 16 16 C 0.04 1.04 4.88 -17.34 -0.08 0.95 16 17 N -0.77 -19.00 12.35 55.55 0.69 -18.31 16 18 Si 1.07 20.07 30.01 -169.99 -5.10 14.96 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 22 C -0.23 -3.12 5.09 -105.05 -0.54 -3.66 16 23 C 0.06 0.85 11.29 -17.36 -0.20 0.66 16 24 N -0.30 -4.26 12.58 30.62 0.39 -3.88 16 25 N -0.38 -4.44 4.01 -68.16 -0.27 -4.71 16 26 C 0.10 0.71 11.47 59.85 0.69 1.40 16 27 C 0.06 0.70 11.40 -17.22 -0.20 0.50 16 28 H 0.07 1.32 6.72 -51.93 -0.35 0.97 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.41 6.46 7.58 -34.47 -0.26 6.20 16 32 H 0.11 2.17 7.33 -52.49 -0.38 1.79 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.11 2.59 6.50 -52.48 -0.34 2.25 16 36 H 0.30 7.81 6.78 -40.82 -0.28 7.54 16 37 H 0.18 2.20 7.67 -52.49 -0.40 1.80 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -31.99 355.35 -8.95 -40.95 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -4.88 Total: 14.23 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: -2.69 Total: -38.58 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.77 Total: -46.25 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -1.88 Total: -48.34 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.10 Total: 14.96 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.53 Total: 57.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.99 -8.95 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.668 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds