Wall clock time and date at job start Tue Mar 31 2020 19:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 N 1.46499 * 109.47082 * 119.99545 * 2 1 3 5 5 S 1.65600 * 120.00146 * 263.79358 * 4 2 1 6 6 O 1.42101 * 106.40112 * 311.69582 * 5 4 2 7 7 O 1.42101 * 106.40405 * 178.77302 * 5 4 2 8 8 C 1.76205 * 107.21782 * 65.23087 * 5 4 2 9 9 C 1.37640 * 120.13157 * 244.28459 * 8 5 4 10 10 C 1.38611 * 120.24483 * 180.32133 * 9 8 5 11 11 C 1.38655 * 120.50526 * 359.67311 * 10 9 8 12 12 C 1.37595 * 120.24586 * 359.97438 * 11 10 9 13 13 C 1.40701 * 120.12201 * 63.97969 * 8 5 4 14 14 C 1.41390 * 120.24819 * 359.97438 * 13 8 5 15 15 H 1.08005 * 119.99646 * 335.62877 * 14 13 8 16 16 C 1.39945 * 120.00246 * 155.63168 * 14 13 8 17 17 N 1.30822 * 119.99781 * 331.91214 * 16 14 13 18 18 Si 1.86799 * 119.99969 * 151.90712 * 16 14 13 19 19 H 1.48492 * 109.47337 * 269.99982 * 18 16 14 20 20 H 1.48497 * 109.47424 * 30.00336 * 18 16 14 21 21 H 1.48500 * 109.46884 * 150.00062 * 18 16 14 22 22 C 1.50698 * 109.47284 * 239.99645 * 2 1 3 23 23 C 1.39868 * 126.03885 * 279.69175 * 22 2 1 24 24 N 1.30844 * 108.19927 * 179.82049 * 23 22 2 25 25 N 1.40080 * 108.20376 * 0.43614 * 24 23 22 26 26 C 1.46511 * 126.03338 * 179.74435 * 25 24 23 27 27 C 1.34945 * 107.92906 * 359.72026 * 25 24 23 28 28 H 1.08999 * 109.47878 * 300.00340 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00120 * 83.79245 * 4 2 1 32 32 H 1.07997 * 119.87236 * 0.02562 * 9 8 5 33 33 H 1.08000 * 119.74253 * 179.69673 * 10 9 8 34 34 H 1.07995 * 119.87549 * 180.02562 * 11 10 9 35 35 H 1.08004 * 120.12835 * 180.02562 * 12 11 10 36 36 H 0.96998 * 120.00051 * 355.67674 * 17 16 14 37 37 H 1.07994 * 125.90057 * 359.97438 * 23 22 2 38 38 H 1.09000 * 109.46614 * 269.97595 * 26 25 24 39 39 H 1.08991 * 109.47349 * 29.97542 * 26 25 24 40 40 H 1.09003 * 109.46896 * 149.97857 * 26 25 24 41 41 H 1.08001 * 126.12674 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4404 0.1798 2.5403 6 8 3.2812 1.2327 2.0889 7 8 2.8393 -0.7667 3.5223 8 6 0.9734 0.9416 3.1505 9 6 0.8589 2.3132 3.1581 10 6 -0.2914 2.9151 3.6437 11 6 -1.3413 2.1450 4.1204 12 6 -1.2516 0.7720 4.1156 13 6 -0.0882 0.1498 3.6258 14 6 0.0153 -1.2603 3.6163 15 1 0.6831 -1.7480 2.9216 16 6 -0.7476 -2.0239 4.5070 17 7 -1.1100 -1.5182 5.6578 18 14 -1.2485 -3.7651 4.0526 19 1 -2.5550 -3.7363 3.3473 20 1 -0.2190 -4.3604 3.1633 21 1 -1.3699 -4.5831 5.2861 22 6 2.0323 -0.7105 -1.2304 23 6 2.1271 -2.0956 -1.3997 24 7 2.6023 -2.3295 -2.5962 25 7 2.8346 -1.0985 -3.2231 26 6 3.3708 -0.9064 -4.5729 27 6 2.4768 -0.1209 -2.3644 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 2.0943 -1.6575 1.2010 32 1 1.6704 2.9228 2.7888 33 1 -0.3705 3.9922 3.6505 34 1 -2.2330 2.6246 4.4960 35 1 -2.0707 0.1740 4.4869 36 1 -0.7979 -0.6382 5.9207 37 1 1.8529 -2.8430 -0.6700 38 1 4.4581 -0.8443 -4.5265 39 1 3.0815 -1.7480 -5.2020 40 1 2.9719 0.0163 -4.9944 41 1 2.5345 0.9416 -2.5493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601356039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:51 Heat of formation + Delta-G solvation = -7.635436 kcal Electronic energy + Delta-G solvation = -27297.477879 eV Core-core repulsion = 23497.612824 eV Total energy + Delta-G solvation = -3799.865055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.15524 -39.57201 -38.09585 -37.27253 -36.67308 -35.86232 -33.83137 -31.95947 -31.64970 -31.18734 -29.75343 -27.41617 -27.14322 -23.97950 -23.48917 -22.93866 -22.10994 -21.07548 -20.26962 -19.95983 -18.56025 -18.21611 -17.61143 -16.81330 -16.58342 -16.30814 -15.94782 -15.71239 -15.38354 -15.23057 -15.04232 -14.88344 -14.40368 -14.22544 -13.99056 -13.67892 -13.50433 -13.43995 -13.28773 -13.06912 -13.01272 -12.91149 -12.84764 -12.72175 -12.42195 -12.28493 -12.17144 -11.96456 -11.57027 -11.42303 -11.21474 -10.94127 -10.36867 -10.29644 -9.92654 -9.61053 -9.33537 -9.32229 -6.65097 -0.16442 0.50152 0.93617 0.96227 1.52254 1.66043 1.72645 1.79006 1.79174 2.30027 2.38970 2.59873 3.00370 3.39421 3.58897 3.86798 4.01595 4.15193 4.28681 4.30993 4.35919 4.38897 4.48170 4.52630 4.61998 4.70412 4.73309 4.86280 4.89345 4.94730 5.09817 5.15867 5.33018 5.40271 5.53440 5.55375 5.66668 5.66905 5.71420 5.91293 6.03618 6.16057 6.21495 6.26684 6.59455 6.73359 6.81127 7.88976 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012219 B = 0.004755 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.959340 B = 5887.450240 C = 6967.051447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.237 3.763 3 H 0.091 0.909 4 N -1.103 6.103 5 S 2.718 3.282 6 O -1.009 7.009 7 O -1.006 7.006 8 C -0.792 4.792 9 C 0.002 3.998 10 C -0.264 4.264 11 C -0.053 4.053 12 C -0.239 4.239 13 C 0.152 3.848 14 C -0.519 4.519 15 H 0.094 0.906 16 C 0.011 3.989 17 N -0.791 5.791 18 Si 1.105 2.895 19 H -0.255 1.255 20 H -0.252 1.252 21 H -0.274 1.274 22 C -0.251 4.251 23 C 0.049 3.951 24 N -0.330 5.330 25 N -0.378 5.378 26 C 0.093 3.907 27 C 0.072 3.928 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.417 0.583 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.289 0.711 37 H 0.188 0.812 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 1.809 -16.955 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.129 3.871 3 H 0.109 0.891 4 N -0.862 5.862 5 S 2.815 3.185 6 O -1.000 7.000 7 O -0.996 6.996 8 C -0.886 4.886 9 C -0.017 4.017 10 C -0.284 4.284 11 C -0.071 4.071 12 C -0.259 4.259 13 C 0.148 3.852 14 C -0.546 4.546 15 H 0.112 0.888 16 C -0.209 4.209 17 N -0.412 5.412 18 Si 0.921 3.079 19 H -0.180 1.180 20 H -0.175 1.175 21 H -0.199 1.199 22 C -0.264 4.264 23 C -0.136 4.136 24 N -0.152 5.152 25 N -0.160 5.160 26 C -0.046 4.046 27 C -0.076 4.076 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.252 0.748 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.205 0.795 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.480 -0.089 -17.053 17.232 hybrid contribution -0.145 1.820 0.708 1.958 sum 2.335 1.731 -16.344 16.601 Atomic orbital electron populations 1.22240 0.94514 1.02836 1.02192 1.18838 0.93483 0.94612 0.80164 0.89098 1.55387 1.83951 1.19265 1.27597 1.00341 0.73730 0.72281 0.72135 1.93416 1.66201 1.58158 1.82188 1.93486 1.83062 1.63176 1.59873 1.29970 1.20913 1.03710 1.34023 1.20614 0.96691 0.92454 0.91978 1.20811 0.96063 0.99225 1.12294 1.21150 0.97851 0.93532 0.94576 1.21347 0.98582 0.94991 1.10981 1.17146 0.89194 0.92493 0.86411 1.21139 1.22750 0.91943 1.18742 0.88829 1.28433 0.91124 1.10026 0.91346 1.70546 1.33585 1.18883 1.18137 0.83187 0.78653 0.68623 0.77451 1.17974 1.17533 1.19906 1.20109 1.14812 0.93708 0.97816 1.23891 0.98516 0.96549 0.94666 1.77285 1.23626 1.05054 1.09250 1.48818 1.49312 1.03195 1.14707 1.22210 1.00166 1.05240 0.77028 1.22802 0.97966 0.96928 0.89942 0.93362 0.90216 0.92129 0.74767 0.85885 0.85479 0.85986 0.88428 0.89896 0.79545 0.89781 0.89103 0.86453 0.77343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.50 71.98 0.68 -3.93 16 2 C 0.24 6.90 3.35 44.24 0.15 7.05 16 3 H 0.09 2.61 7.48 -2.39 -0.02 2.59 16 4 N -1.10 -38.04 4.55 -172.54 -0.79 -38.83 16 5 S 2.72 117.55 4.92 -56.49 -0.28 117.27 16 6 O -1.01 -44.75 16.30 -128.00 -2.09 -46.84 16 7 O -1.01 -50.87 16.58 -128.00 -2.12 -52.99 16 8 C -0.79 -36.30 4.99 22.73 0.11 -36.19 16 9 C 0.00 0.10 9.54 22.22 0.21 0.31 16 10 C -0.26 -10.52 10.05 22.46 0.23 -10.30 16 11 C -0.05 -2.19 10.02 22.22 0.22 -1.96 16 12 C -0.24 -11.36 8.00 22.73 0.18 -11.18 16 13 C 0.15 7.46 4.91 -21.29 -0.10 7.36 16 14 C -0.52 -25.49 7.70 23.46 0.18 -25.31 16 15 H 0.09 4.34 5.60 -2.91 -0.02 4.32 16 16 C 0.01 0.53 4.88 85.26 0.42 0.95 16 17 N -0.79 -40.55 12.35 21.83 0.27 -40.28 16 18 Si 1.10 40.48 30.01 68.60 2.06 42.54 16 19 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 20 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.25 -6.47 5.09 -20.14 -0.10 -6.57 16 23 C 0.05 1.32 11.29 85.23 0.96 2.28 16 24 N -0.33 -8.91 12.58 -57.02 -0.72 -9.63 16 25 N -0.38 -7.83 4.01 -369.55 -1.48 -9.32 16 26 C 0.09 0.98 11.47 127.77 1.47 2.44 16 27 C 0.07 1.46 11.40 83.54 0.95 2.42 16 28 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.42 13.21 7.58 -96.75 -0.73 12.48 16 32 H 0.12 4.77 7.33 -2.91 -0.02 4.75 16 33 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.10 4.79 6.50 -2.91 -0.02 4.77 16 36 H 0.29 15.48 6.78 -92.71 -0.63 14.85 16 37 H 0.19 4.48 7.67 -2.91 -0.02 4.46 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -69.93 355.35 0.89 -69.04 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.48 Total: 41.66 kcal Atomic # 6 Polarization: -78.18 SS G_CDS: 5.56 Total: -72.63 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -2.72 Total: -98.05 kcal Atomic # 8 Polarization: -95.63 SS G_CDS: -4.21 Total: -99.83 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.06 Total: 42.54 kcal Atomic # 16 Polarization: 117.55 SS G_CDS: -0.28 Total: 117.27 kcal Total: -69.93 0.89 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.404 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds