Wall clock time and date at job start Tue Mar 31 2020 19:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46671 * 2 1 4 4 N 1.46499 * 109.47122 * 240.00275 * 2 1 3 5 5 S 1.65598 * 120.00138 * 94.33230 * 4 2 1 6 6 O 1.42109 * 106.40331 * 310.28969 * 5 4 2 7 7 O 1.42097 * 106.40688 * 177.36958 * 5 4 2 8 8 C 1.76203 * 107.21923 * 63.82939 * 5 4 2 9 9 C 1.37645 * 120.12994 * 244.01489 * 8 5 4 10 10 C 1.38611 * 120.24766 * 180.32276 * 9 8 5 11 11 C 1.38656 * 120.50072 * 359.66484 * 10 9 8 12 12 C 1.37596 * 120.24908 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.12704 * 63.70755 * 8 5 4 14 14 C 1.41393 * 120.24182 * 359.97438 * 13 8 5 15 15 H 1.08001 * 120.00196 * 335.25515 * 14 13 8 16 16 C 1.39949 * 119.99844 * 155.25040 * 14 13 8 17 17 N 1.30826 * 119.99905 * 332.25095 * 16 14 13 18 18 Si 1.86802 * 120.00145 * 152.25154 * 16 14 13 19 19 H 1.48498 * 109.47247 * 270.00183 * 18 16 14 20 20 H 1.48507 * 109.46844 * 29.99978 * 18 16 14 21 21 H 1.48497 * 109.47102 * 149.99964 * 18 16 14 22 22 C 1.50699 * 109.47427 * 119.99843 * 2 1 3 23 23 C 1.39868 * 126.03609 * 79.69381 * 22 2 1 24 24 N 1.30843 * 108.20165 * 179.82011 * 23 22 2 25 25 N 1.40078 * 108.20371 * 0.43908 * 24 23 22 26 26 C 1.46499 * 126.04079 * 179.74502 * 25 24 23 27 27 C 1.34946 * 107.92622 * 359.71570 * 25 24 23 28 28 H 1.08997 * 109.47296 * 59.99775 * 1 2 3 29 29 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46926 * 299.99547 * 1 2 3 31 31 H 0.97003 * 120.00021 * 274.32771 * 4 2 1 32 32 H 1.07999 * 119.87302 * 0.02562 * 9 8 5 33 33 H 1.08004 * 119.74900 * 179.69475 * 10 9 8 34 34 H 1.08000 * 119.87414 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.12721 * 180.02562 * 12 11 10 36 36 H 0.96997 * 119.99996 * 356.23642 * 17 16 14 37 37 H 1.08007 * 125.89963 * 359.97438 * 23 22 2 38 38 H 1.08998 * 109.47159 * 269.97774 * 26 25 24 39 39 H 1.09004 * 109.47128 * 29.96911 * 26 25 24 40 40 H 1.08998 * 109.47892 * 149.96877 * 26 25 24 41 41 H 1.08004 * 126.12854 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.3965 0.1757 -2.5560 6 8 1.2874 1.0269 -2.8109 7 8 2.8915 -0.7605 -3.5034 8 6 3.7478 1.2289 -2.1444 9 6 3.5917 2.5962 -2.1727 10 6 4.6549 3.4271 -1.8559 11 6 5.8841 2.8927 -1.5008 12 6 6.0612 1.5289 -1.4597 13 6 4.9888 0.6755 -1.7794 14 6 5.1589 -0.7276 -1.7401 15 1 4.3045 -1.3712 -1.5911 16 6 6.4345 -1.2824 -1.8942 17 7 7.3457 -0.6458 -2.5841 18 14 6.8360 -2.9319 -1.1149 19 1 7.3669 -2.7161 0.2550 20 1 5.6044 -3.7587 -1.0438 21 1 7.8557 -3.6324 -1.9363 22 6 2.0324 -0.7104 1.2304 23 6 2.1160 -2.0957 1.4043 24 7 2.6024 -2.3294 2.5963 25 7 2.8347 -1.0984 3.2232 26 6 3.3717 -0.9061 4.5726 27 6 2.4769 -0.1209 2.3644 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1202 -1.6552 -1.1917 32 1 2.6384 3.0232 -2.4474 33 1 4.5248 4.4989 -1.8855 34 1 6.7056 3.5496 -1.2555 35 1 7.0194 1.1148 -1.1823 36 1 7.1216 0.1837 -3.0343 37 1 1.8307 -2.8434 0.6790 38 1 2.5509 -0.8724 5.2889 39 1 4.0364 -1.7337 4.8204 40 1 3.9275 0.0307 4.6125 41 1 2.5353 0.9417 2.5489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601356040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:54 Heat of formation + Delta-G solvation = -8.018526 kcal Electronic energy + Delta-G solvation = -27676.328284 eV Core-core repulsion = 23876.446617 eV Total energy + Delta-G solvation = -3799.881667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11298 -39.58764 -38.08819 -37.25460 -36.65385 -35.90208 -33.80351 -32.00267 -31.62577 -31.21523 -29.75071 -27.40921 -27.18751 -23.95259 -23.55207 -22.97944 -22.09882 -21.05584 -20.30325 -19.94783 -18.55058 -18.12814 -17.72753 -16.80519 -16.61506 -16.28473 -15.93545 -15.75109 -15.42281 -15.22086 -15.09804 -14.86551 -14.37083 -14.25633 -13.99785 -13.66542 -13.57885 -13.38302 -13.36248 -13.08894 -13.01762 -12.89995 -12.82488 -12.76728 -12.46546 -12.27217 -12.19193 -12.03493 -11.61789 -11.40045 -11.23568 -10.99569 -10.35129 -10.27830 -9.98332 -9.64785 -9.38332 -9.27852 -6.69014 -0.15375 0.46582 0.88858 1.00109 1.44184 1.57864 1.72043 1.74486 1.84515 2.21869 2.39014 2.55767 2.98764 3.35895 3.61426 3.86889 4.02180 4.13741 4.25935 4.32075 4.34899 4.35921 4.47815 4.51583 4.63845 4.67822 4.71951 4.86177 4.87323 4.96102 5.10368 5.12195 5.29526 5.40722 5.47851 5.51638 5.63405 5.67732 5.71484 5.87369 5.99573 6.17915 6.18681 6.26027 6.55378 6.76898 6.77232 7.84399 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008731 B = 0.006623 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.124968 B = 4226.436671 C = 5382.598457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.236 3.764 3 H 0.080 0.920 4 N -1.102 6.102 5 S 2.719 3.281 6 O -1.002 7.002 7 O -1.007 7.007 8 C -0.797 4.797 9 C 0.002 3.998 10 C -0.263 4.263 11 C -0.051 4.051 12 C -0.240 4.240 13 C 0.147 3.853 14 C -0.518 4.518 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.790 5.790 18 Si 1.102 2.898 19 H -0.262 1.262 20 H -0.255 1.255 21 H -0.268 1.268 22 C -0.248 4.248 23 C 0.051 3.949 24 N -0.329 5.329 25 N -0.378 5.378 26 C 0.094 3.906 27 C 0.067 3.933 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.417 0.583 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.289 0.711 37 H 0.190 0.810 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 0.896 13.265 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.128 3.872 3 H 0.098 0.902 4 N -0.861 5.861 5 S 2.815 3.185 6 O -0.992 6.992 7 O -0.997 6.997 8 C -0.890 4.890 9 C -0.018 4.018 10 C -0.283 4.283 11 C -0.070 4.070 12 C -0.260 4.260 13 C 0.143 3.857 14 C -0.545 4.545 15 H 0.110 0.890 16 C -0.208 4.208 17 N -0.411 5.411 18 Si 0.919 3.081 19 H -0.187 1.187 20 H -0.179 1.179 21 H -0.193 1.193 22 C -0.261 4.261 23 C -0.135 4.135 24 N -0.151 5.151 25 N -0.160 5.160 26 C -0.046 4.046 27 C -0.081 4.081 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.207 0.793 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.232 -0.929 13.619 15.006 hybrid contribution -0.452 1.781 -0.748 1.984 sum -6.685 0.852 12.871 14.529 Atomic orbital electron populations 1.22269 0.93411 1.03193 1.02861 1.18855 0.94124 0.94097 0.80081 0.90196 1.55418 1.82272 1.19191 1.29237 1.00402 0.72853 0.72683 0.72524 1.93434 1.52296 1.68848 1.84663 1.93484 1.81920 1.63577 1.60714 1.30077 1.16875 1.08063 1.34026 1.20664 0.98421 0.91644 0.91077 1.20844 0.93911 0.99189 1.14330 1.21159 0.97062 0.94400 0.94356 1.21330 0.99323 0.94229 1.11130 1.17209 0.90448 0.93096 0.84979 1.21104 0.98170 0.92427 1.42788 0.89030 1.28318 0.91781 1.07815 0.92925 1.70544 1.37642 1.15613 1.17326 0.83206 0.78056 0.70222 0.76647 1.18663 1.17884 1.19254 1.20108 1.14649 0.93704 0.97608 1.23870 0.98484 0.96442 0.94666 1.77253 1.23230 1.04932 1.09693 1.48742 1.49449 1.03256 1.14589 1.22169 1.00384 1.04797 0.77264 1.22703 0.98388 0.96635 0.90333 0.92385 0.91395 0.89896 0.74779 0.85595 0.85220 0.85816 0.88604 0.89822 0.79270 0.88920 0.89429 0.87405 0.78253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.50 71.98 0.68 -3.19 16 2 C 0.24 6.87 3.21 44.25 0.14 7.01 16 3 H 0.08 2.40 7.78 -2.38 -0.02 2.39 16 4 N -1.10 -37.80 4.53 -172.52 -0.78 -38.58 16 5 S 2.72 117.02 4.86 -56.49 -0.27 116.74 16 6 O -1.00 -43.43 16.19 -128.00 -2.07 -45.51 16 7 O -1.01 -50.90 16.61 -128.00 -2.13 -53.02 16 8 C -0.80 -37.00 5.70 22.73 0.13 -36.87 16 9 C 0.00 0.07 9.53 22.22 0.21 0.28 16 10 C -0.26 -10.43 10.05 22.46 0.23 -10.21 16 11 C -0.05 -2.13 10.02 22.22 0.22 -1.91 16 12 C -0.24 -11.58 7.98 22.73 0.18 -11.40 16 13 C 0.15 7.40 5.31 -21.29 -0.11 7.29 16 14 C -0.52 -26.29 7.69 23.46 0.18 -26.11 16 15 H 0.09 4.44 5.63 -2.91 -0.02 4.42 16 16 C 0.01 0.60 4.89 85.26 0.42 1.01 16 17 N -0.79 -41.34 12.37 21.83 0.27 -41.07 16 18 Si 1.10 42.76 30.01 68.60 2.06 44.82 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 C -0.25 -6.86 5.09 -20.15 -0.10 -6.97 16 23 C 0.05 1.45 11.28 85.23 0.96 2.41 16 24 N -0.33 -9.76 12.58 -57.02 -0.72 -10.47 16 25 N -0.38 -9.19 4.01 -369.57 -1.48 -10.67 16 26 C 0.09 1.36 11.47 127.77 1.47 2.82 16 27 C 0.07 1.63 11.40 83.54 0.95 2.58 16 28 H 0.06 1.58 7.57 -2.39 -0.02 1.56 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.42 13.12 7.62 -96.74 -0.74 12.39 16 32 H 0.13 4.85 7.33 -2.91 -0.02 4.83 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 4.79 6.51 -2.91 -0.02 4.77 16 36 H 0.29 15.75 6.73 -92.71 -0.62 15.13 16 37 H 0.19 4.61 7.70 -2.91 -0.02 4.59 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -70.34 357.35 0.91 -69.43 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.48 Total: 41.59 kcal Atomic # 6 Polarization: -78.81 SS G_CDS: 5.56 Total: -73.25 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -2.71 Total: -100.80 kcal Atomic # 8 Polarization: -94.33 SS G_CDS: -4.20 Total: -98.53 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.06 Total: 44.82 kcal Atomic # 16 Polarization: 117.02 SS G_CDS: -0.27 Total: 116.74 kcal Total: -70.34 0.91 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.407 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds