Wall clock time and date at job start Tue Mar 31 2020 19:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46495 * 109.47102 * 119.99750 * 2 1 3 5 5 S 1.65592 * 120.00392 * 266.34593 * 4 2 1 6 6 O 1.42104 * 106.40511 * 177.99623 * 5 4 2 7 7 O 1.42104 * 106.40262 * 310.91261 * 5 4 2 8 8 C 1.76200 * 107.21746 * 64.45197 * 5 4 2 9 9 C 1.37643 * 120.12637 * 244.85956 * 8 5 4 10 10 C 1.38620 * 120.24464 * 180.02562 * 9 8 5 11 11 C 1.38650 * 120.50348 * 359.97438 * 10 9 8 12 12 C 1.37601 * 120.24711 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12640 * 64.58820 * 8 5 4 14 14 C 1.41390 * 120.24470 * 359.97438 * 13 8 5 15 15 H 1.08001 * 119.99810 * 331.34292 * 14 13 8 16 16 C 1.39949 * 120.00021 * 151.34779 * 14 13 8 17 17 N 1.30819 * 120.00368 * 348.15281 * 16 14 13 18 18 Si 1.86801 * 119.99688 * 168.15790 * 16 14 13 19 19 H 1.48502 * 109.47249 * 59.99967 * 18 16 14 20 20 H 1.48502 * 109.46878 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47419 * 299.99567 * 18 16 14 22 22 C 1.50696 * 109.46998 * 239.99893 * 2 1 3 23 23 C 1.39872 * 125.90038 * 84.99977 * 22 2 1 24 24 C 1.35312 * 107.92353 * 179.97438 * 23 22 2 25 25 N 1.34945 * 107.74579 * 0.02562 * 24 23 22 26 26 C 1.46501 * 126.03577 * 179.97438 * 25 24 23 27 27 N 1.30838 * 125.89978 * 264.68950 * 22 2 1 28 28 H 1.09001 * 109.47228 * 299.99697 * 1 2 3 29 29 H 1.09008 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47228 * 60.00109 * 1 2 3 31 31 H 0.97008 * 119.99667 * 86.34377 * 4 2 1 32 32 H 1.07996 * 119.87489 * 359.97438 * 9 8 5 33 33 H 1.08000 * 119.74619 * 179.97438 * 10 9 8 34 34 H 1.07994 * 119.87871 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.12507 * 179.97438 * 12 11 10 36 36 H 0.96997 * 120.00659 * 179.97438 * 17 16 14 37 37 H 1.08009 * 126.03429 * 359.97438 * 23 22 2 38 38 H 1.08007 * 126.12642 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46704 * 90.00876 * 26 25 24 40 40 H 1.09002 * 109.46929 * 209.99960 * 26 25 24 41 41 H 1.08996 * 109.47380 * 330.00724 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.3805 0.1738 2.5614 6 8 2.7758 -0.7742 3.5435 7 8 3.2067 1.2527 2.1459 8 6 0.8781 0.8911 3.1384 9 6 0.7244 2.2589 3.1473 10 6 -0.4563 2.8259 3.6012 11 6 -1.4947 2.0244 4.0504 12 6 -1.3631 0.6548 4.0505 13 6 -0.1711 0.0678 3.5865 14 6 -0.0268 -1.3387 3.5761 15 1 0.6188 -1.8099 2.8499 16 6 -0.7208 -2.1202 4.5068 17 7 -1.3145 -1.5522 5.5248 18 14 -0.7993 -3.9746 4.2956 19 1 0.5765 -4.5334 4.3127 20 1 -1.5872 -4.5664 5.4065 21 1 -1.4490 -4.2982 3.0001 22 6 2.0323 -0.7104 -1.2304 23 6 2.2126 -0.1361 -2.4930 24 6 2.6764 -1.0969 -3.3252 25 7 2.7853 -2.2390 -2.6147 26 6 3.2501 -3.5309 -3.1256 27 7 2.3805 -1.9696 -1.3009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 2.1295 -1.6542 1.1884 32 1 1.5269 2.8927 2.8001 33 1 -0.5681 3.9001 3.6050 34 1 -2.4104 2.4769 4.4014 35 1 -2.1731 0.0324 4.4011 36 1 -1.7958 -2.0937 6.1697 37 1 2.0162 0.8927 -2.7569 38 1 2.9158 -0.9723 -4.3710 39 1 4.3306 -3.6032 -3.0013 40 1 2.7661 -4.3358 -2.5725 41 1 2.9996 -3.6148 -4.1831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:10 Heat of formation + Delta-G solvation = 22.238567 kcal Electronic energy + Delta-G solvation = -27294.360701 eV Core-core repulsion = 23495.791080 eV Total energy + Delta-G solvation = -3798.569621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14550 -37.58562 -36.33247 -35.90164 -34.75515 -33.84617 -32.76077 -30.20392 -29.97942 -29.59883 -29.26333 -26.55292 -25.48600 -22.99926 -21.58875 -21.15109 -21.09430 -19.58905 -18.52656 -17.65961 -17.23722 -16.61952 -16.02570 -15.51858 -15.37927 -15.31595 -14.39041 -14.21717 -13.98561 -13.53943 -13.38497 -13.17958 -13.16704 -12.95043 -12.70536 -12.57059 -12.52192 -12.02878 -11.65923 -11.41567 -11.24706 -11.15407 -11.06324 -11.00882 -10.95478 -10.84930 -10.59195 -10.51100 -10.45758 -9.86674 -9.51485 -9.37941 -9.17091 -8.75250 -8.50681 -7.97547 -7.55525 -6.98672 -4.71034 1.59551 1.91628 2.38587 2.50166 2.78495 2.85752 2.99586 3.04023 3.17016 3.82292 3.98294 4.42986 4.46085 4.74582 4.81993 4.88422 4.99472 5.23561 5.32194 5.35598 5.62523 5.64270 5.70316 5.81339 5.86117 6.00291 6.10097 6.27388 6.29647 6.44394 6.57711 6.62835 6.80438 6.83370 7.00008 7.01244 7.13331 7.35406 7.53948 7.61184 7.72092 7.85374 7.85876 7.94633 8.33991 8.55235 8.69452 9.94076 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.005018 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.262745 B = 5578.303694 C = 6790.631647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.239 3.761 3 H 0.105 0.895 4 N -1.114 6.114 5 S 2.699 3.301 6 O -0.964 6.964 7 O -0.999 6.999 8 C -0.773 4.773 9 C -0.003 4.003 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.158 4.158 13 C 0.190 3.810 14 C -0.443 4.443 15 H 0.088 0.912 16 C 0.082 3.918 17 N -0.777 5.777 18 Si 0.912 3.088 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.260 1.260 22 C 0.082 3.918 23 C -0.263 4.263 24 C 0.049 3.951 25 N -0.382 5.382 26 C 0.103 3.897 27 N -0.283 5.283 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.417 0.583 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.287 0.713 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -2.101 -15.307 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.129 3.871 3 H 0.123 0.877 4 N -0.870 5.870 5 S 2.796 3.204 6 O -0.954 6.954 7 O -0.989 6.989 8 C -0.869 4.869 9 C -0.022 4.022 10 C -0.270 4.270 11 C -0.096 4.096 12 C -0.178 4.178 13 C 0.185 3.815 14 C -0.472 4.472 15 H 0.105 0.895 16 C -0.139 4.139 17 N -0.400 5.400 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.086 4.086 23 C -0.293 4.293 24 C -0.097 4.097 25 N -0.164 5.164 26 C -0.038 4.038 27 N -0.106 5.106 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.251 0.749 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.189 0.811 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.052 -3.166 -14.165 14.832 hybrid contribution -0.890 -0.321 -0.525 1.082 sum 2.162 -3.487 -14.690 15.252 Atomic orbital electron populations 1.22332 0.93528 1.03494 1.03272 1.19010 0.94222 0.94656 0.79255 0.87748 1.55693 1.84166 1.20191 1.26934 1.01125 0.74477 0.72738 0.72016 1.93545 1.82492 1.62091 1.57298 1.93444 1.66704 1.55980 1.82785 1.29847 1.20989 1.02664 1.33370 1.20246 0.95937 0.92683 0.93377 1.20469 0.96214 0.97484 1.12881 1.20887 0.96930 0.94529 0.97225 1.21503 0.98572 0.93345 1.04354 1.16945 0.88502 0.91817 0.84251 1.19842 1.22398 0.91257 1.13664 0.89456 1.25923 0.92366 1.02174 0.93474 1.69769 1.23227 1.39013 1.07970 0.86271 0.80125 0.80934 0.79193 1.18053 1.19985 1.18398 1.22461 0.98366 0.91793 0.96025 1.21362 1.13816 1.01261 0.92872 1.22464 1.02005 0.86506 0.98705 1.48521 1.51498 1.09017 1.07356 1.21805 1.00363 0.82211 0.99437 1.77300 1.20502 1.16624 0.96145 0.89738 0.91720 0.91985 0.74887 0.87438 0.88821 0.88945 0.85822 0.90152 0.83263 0.81095 0.90952 0.89317 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.50 37.16 0.35 -2.31 16 2 C 0.24 3.97 3.37 -69.09 -0.23 3.74 16 3 H 0.10 1.68 7.53 -51.93 -0.39 1.29 16 4 N -1.11 -21.29 4.56 -5.89 -0.03 -21.31 16 5 S 2.70 60.97 4.94 -107.50 -0.53 60.44 16 6 O -0.96 -24.89 16.61 -57.17 -0.95 -25.84 16 7 O -1.00 -23.27 16.33 -57.17 -0.93 -24.20 16 8 C -0.77 -18.28 4.74 -38.87 -0.18 -18.46 16 9 C 0.00 -0.06 9.54 -39.66 -0.38 -0.43 16 10 C -0.25 -5.36 10.05 -39.29 -0.39 -5.76 16 11 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 12 C -0.16 -3.84 8.66 -38.87 -0.34 -4.18 16 13 C 0.19 4.75 5.09 -106.83 -0.54 4.20 16 14 C -0.44 -11.12 7.65 -37.74 -0.29 -11.41 16 15 H 0.09 2.09 5.74 -52.49 -0.30 1.78 16 16 C 0.08 1.98 5.24 -17.34 -0.09 1.89 16 17 N -0.78 -19.16 10.88 55.55 0.60 -18.56 16 18 Si 0.91 18.39 29.58 -169.99 -5.03 13.36 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C 0.08 1.28 6.19 -82.41 -0.51 0.77 16 23 C -0.26 -3.32 10.74 -40.01 -0.43 -3.75 16 24 C 0.05 0.52 11.49 -17.23 -0.20 0.32 16 25 N -0.38 -4.65 4.01 -68.16 -0.27 -4.92 16 26 C 0.10 0.78 11.47 59.85 0.69 1.46 16 27 N -0.28 -4.53 11.90 33.67 0.40 -4.12 16 28 H 0.08 1.52 6.40 -51.93 -0.33 1.18 16 29 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.42 7.77 8.04 -34.47 -0.28 7.49 16 32 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.12 3.05 6.23 -52.48 -0.33 2.73 16 36 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 37 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -32.87 356.38 -9.27 -42.14 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.95 Total: 13.67 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -2.95 Total: -36.02 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.70 Total: -48.92 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -1.88 Total: -50.04 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 60.97 SS G_CDS: -0.53 Total: 60.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.87 -9.27 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds